BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0016.p (264 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02886746.1| GntR domain protein [Burkholderia graminis C4... 382 e-104 ref|YP_003774794.1| transcription regulator protein [Herbaspiril... 353 1e-95 ref|YP_546960.1| transcriptional regulator NanR [Polaromonas sp.... 321 9e-86 ref|YP_004688596.1| transcriptional regulator NanR [Cupriavidus ... 301 7e-80 ref|YP_003695556.1| GntR family transcriptional regulator [Stark... 212 5e-53 >ref|ZP_02886746.1| GntR domain protein [Burkholderia graminis C4D1M] gb|EDT07587.1| GntR domain protein [Burkholderia graminis C4D1M] Length = 235 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 190/234 (81%), Positives = 208/234 (88%) Query: 30 MPETIQRRKLYQEVLERLMERIHSGELPPGSQLPSERELMEQYGVGRPAVREALQAMERS 89 M E IQRRKLYQEV++RLMERI SGE+ PG+QLPSERELME YGVGRPA+REALQ +ERS Sbjct: 1 MAEIIQRRKLYQEVVDRLMERIRSGEIAPGAQLPSERELMEIYGVGRPAIREALQTLERS 60 Query: 90 GFVEIAHGERARVVDPTADRLIAQIAIGAQHLLRTKPAMLGHLKEARVLLETSTARMAAE 149 G VEI HGERARVV PTADRLIAQIA GA HLLR+ P ML HLKEARV LET TARMAAE Sbjct: 61 GIVEIVHGERARVVVPTADRLIAQIAGGAMHLLRSHPDMLAHLKEARVFLETGTARMAAE 120 Query: 150 RATEEQIARLRLSIAQHRASMVNLEEFIERDMAFHREIADISGNPLFPSIVESMFKWAGE 209 RATEE +ARL+LS+A+HRASMVNLEEFIERDMAFHREIA ISGNP+FPSIVES+F+WAGE Sbjct: 121 RATEEDVARLQLSVARHRASMVNLEEFIERDMAFHREIALISGNPIFPSIVESLFRWAGE 180 Query: 210 FYFTLVRAPGAEELTLAEHQRIVDAIAAHDGDAAAEAMRSHLMRANALYRELGQ 263 +Y LVRAPGAEELTL+EHQRIVDAIA HDGD AAEAMR+HL RAN LYR L + Sbjct: 181 YYRPLVRAPGAEELTLSEHQRIVDAIAKHDGDGAAEAMRAHLNRANELYRTLSR 234 >ref|YP_003774794.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62886.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 201/235 (85%), Positives = 211/235 (89%) Query: 30 MPETIQRRKLYQEVLERLMERIHSGELPPGSQLPSERELMEQYGVGRPAVREALQAMERS 89 MPE IQRRKLYQEVLERLM RIH GE P GSQLPSER+LMEQYGVGRPAVREALQAMERS Sbjct: 1 MPEQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERS 60 Query: 90 GFVEIAHGERARVVDPTADRLIAQIAIGAQHLLRTKPAMLGHLKEARVLLETSTARMAAE 149 GFVEIAHGERARVVDPTA+RLIAQIA GAQHLLRTKP ML HLKEARV LETSTARMAA Sbjct: 61 GFVEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAA 120 Query: 150 RATEEQIARLRLSIAQHRASMVNLEEFIERDMAFHREIADISGNPLFPSIVESMFKWAGE 209 RAT EQI RLR ++ HRASMV+L EFIERDMAFHREIADISGNP+FPSIVES+F+WA E Sbjct: 121 RATPEQIERLRQTVTVHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASE 180 Query: 210 FYFTLVRAPGAEELTLAEHQRIVDAIAAHDGDAAAEAMRSHLMRANALYRELGQQ 264 FY +VRAPGAEELTLAEH RIVDAIAA DGDAAAEAMR HL+RAN LYR LGQQ Sbjct: 181 FYTPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELYRRLGQQ 235 >ref|YP_546960.1| transcriptional regulator NanR [Polaromonas sp. JS666] gb|ABE42062.1| transcriptional regulator, GntR family [Polaromonas sp. JS666] Length = 237 Score = 321 bits (822), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 162/230 (70%), Positives = 191/230 (83%) Query: 32 ETIQRRKLYQEVLERLMERIHSGELPPGSQLPSERELMEQYGVGRPAVREALQAMERSGF 91 E IQRRKLYQEVL+RL+ERI SGE+PPG+ LPSERELME YGVGRPAVREALQA+ERSG Sbjct: 4 EQIQRRKLYQEVLDRLLERIRSGEIPPGAHLPSERELMEFYGVGRPAVREALQALERSGI 63 Query: 92 VEIAHGERARVVDPTADRLIAQIAIGAQHLLRTKPAMLGHLKEARVLLETSTARMAAERA 151 VEI HGERARVV PTA RLI Q+A GA+HLL ++P ML HLK+ARV LE AR+AAERA Sbjct: 64 VEITHGERARVVIPTAGRLIEQLAGGARHLLHSQPDMLEHLKDARVFLEVGMARVAAERA 123 Query: 152 TEEQIARLRLSIAQHRASMVNLEEFIERDMAFHREIADISGNPLFPSIVESMFKWAGEFY 211 T+E IARLR +A+HRAS+ ++EFI+ DMAFHREIA ISGNP+FP+I+E++F WA E+Y Sbjct: 124 TDEDIARLRQRLAEHRASVGKVDEFIQLDMAFHREIARISGNPIFPAILEALFGWAIEYY 183 Query: 212 FTLVRAPGAEELTLAEHQRIVDAIAAHDGDAAAEAMRSHLMRANALYREL 261 VRAPGAE+LTLAEH R+V+AIA D AA A+R HL RAN LYR+L Sbjct: 184 HPFVRAPGAEQLTLAEHARLVEAIATRDPQAAEAAIREHLTRANELYRQL 233 >ref|YP_004688596.1| transcriptional regulator NanR [Cupriavidus necator N-1] gb|AEI82558.1| transcriptional regulator NanR [Cupriavidus necator N-1] Length = 264 Score = 301 bits (771), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 151/257 (58%), Positives = 193/257 (75%), Gaps = 3/257 (1%) Query: 9 VLKSHINFHSRLIQAD-AMTQAMP--ETIQRRKLYQEVLERLMERIHSGELPPGSQLPSE 65 +L H H+ + D + + MP E IQRR+L+++VL+RL ERI +GE+ PG QLP+E Sbjct: 1 MLACHPTVHAIIWSDDIKIRRTMPTSEPIQRRRLFEDVLDRLTERIRNGEIAPGEQLPAE 60 Query: 66 RELMEQYGVGRPAVREALQAMERSGFVEIAHGERARVVDPTADRLIAQIAIGAQHLLRTK 125 R+LME YGVGRPA+REALQA+ER+G +EIAHGERARVV PT RLI QI GAQHLLR+ Sbjct: 61 RDLMEYYGVGRPAIREALQALERAGIIEIAHGERARVVIPTPQRLIQQIGAGAQHLLRSD 120 Query: 126 PAMLGHLKEARVLLETSTARMAAERATEEQIARLRLSIAQHRASMVNLEEFIERDMAFHR 185 P L HLK ARV LE A++AA AT + I RL+ + + R + + F+ RDMAFH Sbjct: 121 PDSLEHLKGARVFLECGMAQLAAANATPDDIQRLQARLEEQRQAKDDSALFLTRDMAFHC 180 Query: 186 EIADISGNPLFPSIVESMFKWAGEFYFTLVRAPGAEELTLAEHQRIVDAIAAHDGDAAAE 245 E+A ISGNP+FP+IV+++F+WA E+Y +VRAPGAE LTLAEHQR++DA+A+HDGDAA+ Sbjct: 181 ELARISGNPIFPAIVQALFEWAREYYRGIVRAPGAEALTLAEHQRVIDAVASHDGDAASR 240 Query: 246 AMRSHLMRANALYRELG 262 AMR HL RANALYR L Sbjct: 241 AMREHLTRANALYRTLN 257 >ref|YP_003695556.1| GntR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH90937.1| GntR domain protein [Starkeya novella DSM 506] Length = 236 Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 112/233 (48%), Positives = 148/233 (63%) Query: 30 MPETIQRRKLYQEVLERLMERIHSGELPPGSQLPSERELMEQYGVGRPAVREALQAMERS 89 + +TI RRKL EV +RL I SGEL PG +PSER+LME++GVGRPA+REA+QA+ Sbjct: 4 VSDTIVRRKLSHEVFDRLKTLITSGELGPGDAMPSERDLMERFGVGRPAIREAMQALANI 63 Query: 90 GFVEIAHGERARVVDPTADRLIAQIAIGAQHLLRTKPAMLGHLKEARVLLETSTARMAAE 149 G + I HGERARV +A L Q+ + AQ LL P L HLK+AR E AR AA+ Sbjct: 64 GLITITHGERARVQQLSARSLFQQVDLSAQILLSASPDSLEHLKQARRFFERGMAREAAQ 123 Query: 150 RATEEQIARLRLSIAQHRASMVNLEEFIERDMAFHREIADISGNPLFPSIVESMFKWAGE 209 RAT E I RLR + Q ++ ++FI DM FH +IA ISGNP+F ++ ESM W + Sbjct: 124 RATAEDIKRLRDILDQQAKAVNEPKQFIGLDMRFHTQIAAISGNPIFEAVSESMLSWLRQ 183 Query: 210 FYFTLVRAPGAEELTLAEHQRIVDAIAAHDGDAAAEAMRSHLMRANALYRELG 262 +Y ++ G E +TL EH++I+D IA HD D A M HL R++AL+ G Sbjct: 184 YYTEMLTWSGRENVTLVEHEQIIDHIANHDPDGAEAIMVKHLDRSSALFTRQG 236