BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0013.p         (158 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02886747.1| type III effector Hrp-dependent protein [Burk...   154   4e-36
ref|YP_004688600.1| type III effector Hrp-dependent protein [Cup...   152   1e-35
ref|YP_546959.1| Hrp-dependent type III effector protein [Polaro...   151   2e-35
ref|YP_002497693.1| type III effector Hrp-dependent protein [Met...   150   5e-35
ref|YP_001417816.1| Hrp-dependent type III effector protein [Xan...   147   7e-34

>ref|ZP_02886747.1| type III effector Hrp-dependent protein [Burkholderia graminis
           C4D1M]
 gb|EDT07588.1| type III effector Hrp-dependent protein [Burkholderia graminis
           C4D1M]
          Length = 470

 Score =  154 bits (389), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/105 (70%), Positives = 83/105 (79%)

Query: 6   NENALPAGLLLAYYGDDFTGSTDAMEVMAAAGLPTVLFLQTPDLAMLQRFPDVRCIGIAG 65
           N  A PAGLLLAYYGDDFTGSTDAME M AAG+PTVL LQ P   +L RFP+VRC+G+AG
Sbjct: 14  NATAWPAGLLLAYYGDDFTGSTDAMEAMQAAGVPTVLCLQKPTPELLARFPEVRCVGMAG 73

Query: 66  SSRGRSPAWMDEHLPQAFSQLAALRPPLMQYKVCSTFDSSATTGS 110
           SSRGRS AWMD+ LP   + LAAL  P++QYKVCSTFDSS   GS
Sbjct: 74  SSRGRSSAWMDDELPDVLASLAALGAPILQYKVCSTFDSSPEVGS 118


>ref|YP_004688600.1| type III effector Hrp-dependent protein [Cupriavidus necator N-1]
 gb|AEI82562.1| type III effector Hrp-dependent protein [Cupriavidus necator N-1]
          Length = 464

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 84/107 (78%)

Query: 9   ALPAGLLLAYYGDDFTGSTDAMEVMAAAGLPTVLFLQTPDLAMLQRFPDVRCIGIAGSSR 68
            LPAGLLL YYGDDFTGSTDAMEVMAAAG+PTVL L+ P   +L+RFP+ RC+G+AGS+R
Sbjct: 8   GLPAGLLLTYYGDDFTGSTDAMEVMAAAGIPTVLCLEPPTAELLKRFPEARCVGLAGSAR 67

Query: 69  GRSPAWMDEHLPQAFSQLAALRPPLMQYKVCSTFDSSATTGSASIVI 115
           GRSP WM+  LP+AF+ L  L  P++QYK+CSTFDSS   GS    I
Sbjct: 68  GRSPEWMETELPKAFASLKQLGAPVLQYKICSTFDSSPAIGSIGKAI 114


>ref|YP_546959.1| Hrp-dependent type III effector protein [Polaromonas sp. JS666]
 gb|ABE42061.1| type III effector Hrp-dependent outers domain protein [Polaromonas
           sp. JS666]
          Length = 457

 Score =  151 bits (382), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/104 (68%), Positives = 82/104 (78%)

Query: 7   ENALPAGLLLAYYGDDFTGSTDAMEVMAAAGLPTVLFLQTPDLAMLQRFPDVRCIGIAGS 66
           +N  P GLLLAYYGDDFTGSTD ME  +AAG+PTVLFL+ P    L+RFP+VRC+G+AG 
Sbjct: 3   DNRWPDGLLLAYYGDDFTGSTDVMEAFSAAGVPTVLFLRPPTADWLKRFPEVRCVGLAGQ 62

Query: 67  SRGRSPAWMDEHLPQAFSQLAALRPPLMQYKVCSTFDSSATTGS 110
           SRGRSP WMD  LPQAF+ LA L  P++QYKVCSTFDSS   GS
Sbjct: 63  SRGRSPDWMDRELPQAFASLAKLGAPILQYKVCSTFDSSPAVGS 106


>ref|YP_002497693.1| type III effector Hrp-dependent protein [Methylobacterium nodulans
           ORS 2060]
 gb|ACL57390.1| type III effector Hrp-dependent outers [Methylobacterium nodulans
           ORS 2060]
          Length = 458

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 79/103 (76%)

Query: 8   NALPAGLLLAYYGDDFTGSTDAMEVMAAAGLPTVLFLQTPDLAMLQRFPDVRCIGIAGSS 67
            A P GLLLAYYGDDFTGSTDAME + AAG+PTVLFL+ PD   L RFP  RCIG+AGSS
Sbjct: 5   GAWPEGLLLAYYGDDFTGSTDAMEALTAAGVPTVLFLEAPDARWLARFPHARCIGLAGSS 64

Query: 68  RGRSPAWMDEHLPQAFSQLAALRPPLMQYKVCSTFDSSATTGS 110
           RGRSP WMD  LP  F+ LA L  P++ YKVCSTFDSS  TGS
Sbjct: 65  RGRSPEWMDRELPGLFAGLARLGAPILHYKVCSTFDSSPETGS 107


>ref|YP_001417816.1| Hrp-dependent type III effector protein [Xanthobacter autotrophicus
           Py2]
 gb|ABS68159.1| type III effector Hrp-dependent outers [Xanthobacter autotrophicus
           Py2]
          Length = 474

 Score =  147 bits (370), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 81/100 (81%)

Query: 11  PAGLLLAYYGDDFTGSTDAMEVMAAAGLPTVLFLQTPDLAMLQRFPDVRCIGIAGSSRGR 70
           PAGLLLAYYGDDFTGSTDA+E + AAG+P+VLFL+ P   ML RFP VRC+G+AGSSRGR
Sbjct: 12  PAGLLLAYYGDDFTGSTDALEAITAAGVPSVLFLRLPTDEMLARFPGVRCVGLAGSSRGR 71

Query: 71  SPAWMDEHLPQAFSQLAALRPPLMQYKVCSTFDSSATTGS 110
           +PAWMD  LP  F++L +L  P++ YKVCSTFDS+   GS
Sbjct: 72  APAWMDAELPAVFARLKSLGAPILHYKVCSTFDSAPHVGS 111