BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0012.p (413 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02886748.1| Ribulose-bisphosphate carboxylase [Burkholder... 692 0.0 ref|YP_004688599.1| ribulose-bisphosphate carboxylase [Cupriavid... 682 0.0 ref|YP_001417817.1| RuBisCO-like protein [Xanthobacter autotroph... 635 e-180 ref|YP_546958.1| RuBisCo-like protein [Polaromonas sp. JS666] >g... 603 e-170 ref|YP_002497694.1| RuBisCO-like protein [Methylobacterium nodul... 602 e-170 >ref|ZP_02886748.1| Ribulose-bisphosphate carboxylase [Burkholderia graminis C4D1M] gb|EDT07589.1| Ribulose-bisphosphate carboxylase [Burkholderia graminis C4D1M] Length = 427 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/412 (83%), Positives = 377/412 (91%) Query: 2 ERIYASYWLETGDDPARAAEVIAGEQSSGTFVALPTETPELKERSGARVERLTILGHSKQ 61 ERI+A+YWLETGDDP RAA+VIAGEQSSGTFVALP ETPELK RSGARVE LT+L + Sbjct: 16 ERIHATYWLETGDDPQRAADVIAGEQSSGTFVALPNETPELKARSGARVEHLTVLETVGR 75 Query: 62 PSLPGGMPSQRYTQCELEISWPLENLGPSLPNLMATIAGNLFELRQVSGLRLTGLRLPPA 121 PSL GG+ S+RY++C LE+SWP+ENLG SLPNLM+TIAGNLFELRQVSGLRLTGL LPP+ Sbjct: 76 PSLAGGIVSERYSRCTLELSWPIENLGASLPNLMSTIAGNLFELRQVSGLRLTGLTLPPS 135 Query: 122 FAQAYQGPAFGIAGTRRLTGVMHGPLIGTIIKPSIGLSVDETVQQVRELVAGGVDFIKDD 181 FA AY GPAFGI GTRRL+GV HGPLIGTIIKPS+GLS ET QQVRELVAGG+DFIKDD Sbjct: 136 FASAYPGPAFGIEGTRRLSGVAHGPLIGTIIKPSVGLSPVETAQQVRELVAGGIDFIKDD 195 Query: 182 ELQADGARCPFDERVRGVMRVINAHAERTGKKVMMAFNLTGDLDQMRRRHDLVLAEGGTC 241 ELQADG CPFDERVR VMRV+NA A+RTGKK M+AFNLTGDLDQMRRRHDLVLAEGGTC Sbjct: 196 ELQADGPHCPFDERVRAVMRVVNAEADRTGKKAMVAFNLTGDLDQMRRRHDLVLAEGGTC 255 Query: 242 VMASLNSIGLIGLQELRRHAQLPIHAHRAGWGYLTRCPQLGWDYAPWQMLWRLAGADHMH 301 VMA LNSIGL+G+ ELRRHAQLPIHAHRAGWGYL+RCP+LGWDYAPWQM+WRLAGADH+H Sbjct: 256 VMAVLNSIGLVGMHELRRHAQLPIHAHRAGWGYLSRCPELGWDYAPWQMIWRLAGADHLH 315 Query: 302 VNGLRNKFSEPDDSVIAAARSVLSPVMPEAPLPAMPVFSSGQTGLQAADTYRAIGCADLI 361 VNGLRNKFSEPDDSVIAAAR+VL+PVM EAP+ AMPVFSSGQTGLQAADTY AIGCADLI Sbjct: 316 VNGLRNKFSEPDDSVIAAARAVLAPVMREAPMSAMPVFSSGQTGLQAADTYAAIGCADLI 375 Query: 362 HTAGGGIFGHPHGVSAGVEALRESWVAAMEDVPLERHAERHPALQAALGFWK 413 HTAGGGIFGHP GV+AGVEALRE+WVAA+E VPL++HA RHPAL AAL FWK Sbjct: 376 HTAGGGIFGHPGGVAAGVEALREAWVAAVEGVPLKQHAARHPALNAALEFWK 427 >ref|YP_004688599.1| ribulose-bisphosphate carboxylase [Cupriavidus necator N-1] gb|AEI82561.1| ribulose-bisphosphate carboxylase [Cupriavidus necator N-1] Length = 414 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/412 (78%), Positives = 366/412 (88%) Query: 2 ERIYASYWLETGDDPARAAEVIAGEQSSGTFVALPTETPELKERSGARVERLTILGHSKQ 61 ERIYASYWLETGDDP RAAEVIAGEQSSGTF+ALP ETPELK+RSGARVERL +L + Sbjct: 3 ERIYASYWLETGDDPRRAAEVIAGEQSSGTFIALPNETPELKQRSGARVERLEVLETVDK 62 Query: 62 PSLPGGMPSQRYTQCELEISWPLENLGPSLPNLMATIAGNLFELRQVSGLRLTGLRLPPA 121 PSLPGGMPS Y +C L+ISWPLENLGPSLPNL++TIAGNLFELRQVSGLR+T L+LP + Sbjct: 63 PSLPGGMPSDVYRRCALQISWPLENLGPSLPNLVSTIAGNLFELRQVSGLRITDLQLPAS 122 Query: 122 FAQAYQGPAFGIAGTRRLTGVMHGPLIGTIIKPSIGLSVDETVQQVRELVAGGVDFIKDD 181 FA+AYQGPAFGI GTR+L V GPLIGTIIKPS+GLSV++T QQVRELVAGG+DFIKDD Sbjct: 123 FARAYQGPAFGIDGTRKLADVTTGPLIGTIIKPSVGLSVEQTAQQVRELVAGGIDFIKDD 182 Query: 182 ELQADGARCPFDERVRGVMRVINAHAERTGKKVMMAFNLTGDLDQMRRRHDLVLAEGGTC 241 ELQADG+ CPFDERV VMRV+N A+R+G+K M+AFNLTGDLDQM+RRHD VLA+GGTC Sbjct: 183 ELQADGSFCPFDERVSAVMRVVNEAAQRSGRKAMVAFNLTGDLDQMKRRHDHVLAQGGTC 242 Query: 242 VMASLNSIGLIGLQELRRHAQLPIHAHRAGWGYLTRCPQLGWDYAPWQMLWRLAGADHMH 301 VM LNS+G++GLQELRRH+QLPIHAHRAGWGYL+R P LGWDYAPWQ +WRLAGADH+H Sbjct: 243 VMVCLNSVGIVGLQELRRHSQLPIHAHRAGWGYLSRSPALGWDYAPWQKIWRLAGADHLH 302 Query: 302 VNGLRNKFSEPDDSVIAAARSVLSPVMPEAPLPAMPVFSSGQTGLQAADTYRAIGCADLI 361 VNGLRNKFSE D+SVIAAA++VL+PVMPEA +PAMPVFSSGQTGLQA DTYRA+G DLI Sbjct: 303 VNGLRNKFSEADESVIAAAKAVLAPVMPEAAMPAMPVFSSGQTGLQAEDTYRALGTTDLI 362 Query: 362 HTAGGGIFGHPHGVSAGVEALRESWVAAMEDVPLERHAERHPALQAALGFWK 413 HTAGGGIFGHP GVSAGVEALRE+WVAA+ +PL RHA AL+ A+ FW+ Sbjct: 363 HTAGGGIFGHPAGVSAGVEALREAWVAAVNHIPLARHAATSSALRQAMEFWR 414 >ref|YP_001417817.1| RuBisCO-like protein [Xanthobacter autotrophicus Py2] gb|ABS68160.1| Ribulose-bisphosphate carboxylase [Xanthobacter autotrophicus Py2] Length = 414 Score = 635 bits (1637), Expect = e-180, Method: Compositional matrix adjust. Identities = 313/412 (75%), Positives = 352/412 (85%) Query: 2 ERIYASYWLETGDDPARAAEVIAGEQSSGTFVALPTETPELKERSGARVERLTILGHSKQ 61 ER+YA+YW+ETG DPAR AEVIAGEQSSGTFVAL TET ELKERSGARVERL IL + Sbjct: 3 ERVYATYWMETGGDPARTAEVIAGEQSSGTFVALATETAELKERSGARVERLDILDTADI 62 Query: 62 PSLPGGMPSQRYTQCELEISWPLENLGPSLPNLMATIAGNLFELRQVSGLRLTGLRLPPA 121 PSLPGGM S RYT+ LE+SWP+EN GPSLPNLM+TIAGNLFEL QVSGLRL L+LPP+ Sbjct: 63 PSLPGGMASDRYTRAILELSWPVENFGPSLPNLMSTIAGNLFELHQVSGLRLIDLKLPPS 122 Query: 122 FAQAYQGPAFGIAGTRRLTGVMHGPLIGTIIKPSIGLSVDETVQQVRELVAGGVDFIKDD 181 F A+ GPAFGIAGTR+L GV GP+IGTIIKPSIGL+ +ET QQVREL+AG +DFIKDD Sbjct: 123 FTNAFAGPAFGIAGTRKLAGVAQGPIIGTIIKPSIGLTPEETAQQVRELIAGDIDFIKDD 182 Query: 182 ELQADGARCPFDERVRGVMRVINAHAERTGKKVMMAFNLTGDLDQMRRRHDLVLAEGGTC 241 ELQADGARCPF+ RV+ VMRV+N A+R G+KVM+AFN+TGDLD+MRRRHDLVLAEGGTC Sbjct: 183 ELQADGARCPFEARVKAVMRVVNDAADRRGRKVMVAFNITGDLDEMRRRHDLVLAEGGTC 242 Query: 242 VMASLNSIGLIGLQELRRHAQLPIHAHRAGWGYLTRCPQLGWDYAPWQMLWRLAGADHMH 301 VM LNSIGL+G++E+RRH QLPIH HRAGWGYL RCP LGWDYAPWQ LWRLAG DH+H Sbjct: 243 VMVCLNSIGLVGVREIRRHTQLPIHGHRAGWGYLYRCPSLGWDYAPWQQLWRLAGVDHLH 302 Query: 302 VNGLRNKFSEPDDSVIAAARSVLSPVMPEAPLPAMPVFSSGQTGLQAADTYRAIGCADLI 361 VNGL NKFSE + SVIAAAR+VLSP+ AP+ AMPVFSSGQTG QAA+TY AIGCADLI Sbjct: 303 VNGLDNKFSEANASVIAAARAVLSPLNHAAPMGAMPVFSSGQTGRQAAETYAAIGCADLI 362 Query: 362 HTAGGGIFGHPHGVSAGVEALRESWVAAMEDVPLERHAERHPALQAALGFWK 413 HTAGGGIFGHP GV AGVEALR +W AAM LE A R PAL++ALGFW+ Sbjct: 363 HTAGGGIFGHPAGVPAGVEALRAAWRAAMAGASLEDEATRSPALRSALGFWR 414 >ref|YP_546958.1| RuBisCo-like protein [Polaromonas sp. JS666] gb|ABE42060.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Polaromonas sp. JS666] Length = 413 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 299/411 (72%), Positives = 343/411 (83%) Query: 2 ERIYASYWLETGDDPARAAEVIAGEQSSGTFVALPTETPELKERSGARVERLTILGHSKQ 61 ERI+A+YWLETGDDP RAAEVIAGEQSSGTF+ LP ETP LK RSGAR+ERL +L Q Sbjct: 3 ERIHATYWLETGDDPRRAAEVIAGEQSSGTFITLPNETPALKARSGARIERLEVLEQVGQ 62 Query: 62 PSLPGGMPSQRYTQCELEISWPLENLGPSLPNLMATIAGNLFELRQVSGLRLTGLRLPPA 121 PSLP P++ YT+C LE+SWP+ENLGPSLPNLM+TIAGNLFELRQVSGLR+ L+LP + Sbjct: 63 PSLPVATPAKVYTRCTLELSWPIENLGPSLPNLMSTIAGNLFELRQVSGLRVLDLKLPAS 122 Query: 122 FAQAYQGPAFGIAGTRRLTGVMHGPLIGTIIKPSIGLSVDETVQQVRELVAGGVDFIKDD 181 FA AY GPAFGIAGTRRL+GV GPLIGTIIKPS+GL +T +QVR+L+ GG+DFIKDD Sbjct: 123 FAAAYPGPAFGIAGTRRLSGVAQGPLIGTIIKPSVGLDPAQTAEQVRQLIDGGIDFIKDD 182 Query: 182 ELQADGARCPFDERVRGVMRVINAHAERTGKKVMMAFNLTGDLDQMRRRHDLVLAEGGTC 241 ELQADG CPFDERVR VM+V+N A+R G+KVM+AFNLTGDLDQMRRRHDLV + GGTC Sbjct: 183 ELQADGPHCPFDERVRAVMQVVNDAAQRDGRKVMVAFNLTGDLDQMRRRHDLVQSLGGTC 242 Query: 242 VMASLNSIGLIGLQELRRHAQLPIHAHRAGWGYLTRCPQLGWDYAPWQMLWRLAGADHMH 301 VMASLNSIGL+GL ELRRHA LPIHAHR GWGYL+R P LGWD+APW +WRLAGADH+H Sbjct: 243 VMASLNSIGLVGLLELRRHASLPIHAHRCGWGYLSRSPALGWDFAPWHQIWRLAGADHLH 302 Query: 302 VNGLRNKFSEPDDSVIAAARSVLSPVMPEAPLPAMPVFSSGQTGLQAADTYRAIGCADLI 361 VNGL NKFSE D SVIAAAR+VL P+ P+PAMPVFSSGQTGLQA TY A+G ADLI Sbjct: 303 VNGLANKFSESDASVIAAARAVLRPLFAHQPMPAMPVFSSGQTGLQAPGTYAALGSADLI 362 Query: 362 HTAGGGIFGHPHGVSAGVEALRESWVAAMEDVPLERHAERHPALQAALGFW 412 H AGGGIFGHP G+++GV A R++W AAM PL HA+ H L++AL FW Sbjct: 363 HAAGGGIFGHPGGIASGVSAFRQAWEAAMAGTPLHEHAKTHAELRSALEFW 413 >ref|YP_002497694.1| RuBisCO-like protein [Methylobacterium nodulans ORS 2060] gb|ACL57391.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Methylobacterium nodulans ORS 2060] Length = 414 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 309/412 (75%), Positives = 349/412 (84%) Query: 2 ERIYASYWLETGDDPARAAEVIAGEQSSGTFVALPTETPELKERSGARVERLTILGHSKQ 61 ER++A+YW+ETGDDPAR AEVIAGEQSSGTFVAL TETPELK+RSGA VERL +L Sbjct: 3 ERVHATYWMETGDDPARTAEVIAGEQSSGTFVALATETPELKQRSGAFVERLEVLETVSG 62 Query: 62 PSLPGGMPSQRYTQCELEISWPLENLGPSLPNLMATIAGNLFELRQVSGLRLTGLRLPPA 121 PSLPG PS RYT+ LE+SWP+EN GPSLPNL TIAGNLFEL QVSGLRLTGL LPP+ Sbjct: 63 PSLPGARPSDRYTRAILELSWPVENFGPSLPNLWTTIAGNLFELGQVSGLRLTGLSLPPS 122 Query: 122 FAQAYQGPAFGIAGTRRLTGVMHGPLIGTIIKPSIGLSVDETVQQVRELVAGGVDFIKDD 181 F + GPAFG+ GTR L+GV GPLIGTIIKPSIGLS +ET QQVRELVAG +DFIKDD Sbjct: 123 FTAPFTGPAFGVEGTRALSGVAQGPLIGTIIKPSIGLSAEETAQQVRELVAGDIDFIKDD 182 Query: 182 ELQADGARCPFDERVRGVMRVINAHAERTGKKVMMAFNLTGDLDQMRRRHDLVLAEGGTC 241 ELQADGARCPF+ERVR VMRV+N A+R G+K M+AFNLTGDLDQMRRRHDLVL EGGTC Sbjct: 183 ELQADGARCPFEERVRAVMRVVNEAADRRGRKAMVAFNLTGDLDQMRRRHDLVLREGGTC 242 Query: 242 VMASLNSIGLIGLQELRRHAQLPIHAHRAGWGYLTRCPQLGWDYAPWQMLWRLAGADHMH 301 VM LN+IGL+G+QE RRH+QLPIHAHRAGWG LTRCP LG+DYAPWQ LWRLAGADH+H Sbjct: 243 VMLCLNAIGLVGVQEFRRHSQLPIHAHRAGWGALTRCPALGYDYAPWQQLWRLAGADHLH 302 Query: 302 VNGLRNKFSEPDDSVIAAARSVLSPVMPEAPLPAMPVFSSGQTGLQAADTYRAIGCADLI 361 VNGLRNKF+E D+SVIAAAR+VL+P+ P+A + AMPVFSSGQTGLQAA+TY A+GC DLI Sbjct: 303 VNGLRNKFAEADESVIAAARAVLAPIGPDARMGAMPVFSSGQTGLQAAETYAALGCTDLI 362 Query: 362 HTAGGGIFGHPHGVSAGVEALRESWVAAMEDVPLERHAERHPALQAALGFWK 413 HTAGGGIFGHP GV+AGVEA R +W AA + VPL A AL+ AL FW+ Sbjct: 363 HTAGGGIFGHPGGVAAGVEAFRAAWTAAAQGVPLREAASGSGALRDALEFWR 414