BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0194.p         (77 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778162.1| branched-chain amino acid ABC transporter pe...   135   2e-30
ref|ZP_01914817.1| ABC-type transporter, permease component [Lim...   135   2e-30
ref|YP_293151.1| inner-membrane translocator [Ralstonia eutropha...   130   8e-29
ref|YP_003750803.1| branched-chain amino acid transport system p...   129   1e-28
ref|YP_003744089.1| branched-chain amino acid transporter permea...   129   1e-28

>ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ66254.1| ABC-type branched-chain amino acid transport system, permease
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 75/77 (97%)

Query: 1   VIQVSPLMGSNLIIVVFAVVVIGGMGSILGSIVTGLGLGVIEGLTRVFYPELSATVVFII 60
           VIQVSPLMGSNLII VFAVVVIGGMGSILGSI+TGL LG+IEGLTRVFYPELSATVVFII
Sbjct: 218 VIQVSPLMGSNLIITVFAVVVIGGMGSILGSIITGLVLGLIEGLTRVFYPELSATVVFII 277

Query: 61  MAIVLMIRPAGLFGKEK 77
           MAIVLM+RPAGLFGKEK
Sbjct: 278 MAIVLMVRPAGLFGKEK 294


>ref|ZP_01914817.1| ABC-type transporter, permease component [Limnobacter sp. MED105]
 gb|EDM84133.1| ABC-type transporter, permease component [Limnobacter sp. MED105]
          Length = 294

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 75/77 (97%)

Query: 1   VIQVSPLMGSNLIIVVFAVVVIGGMGSILGSIVTGLGLGVIEGLTRVFYPELSATVVFII 60
           VIQ+SPLMGSNLII VFAVVVIGGMGSILGSI+TGL LG++EGLTRVFYPELSATVVFII
Sbjct: 218 VIQISPLMGSNLIITVFAVVVIGGMGSILGSIITGLTLGIVEGLTRVFYPELSATVVFII 277

Query: 61  MAIVLMIRPAGLFGKEK 77
           MAIVLMIRPAGLFG+EK
Sbjct: 278 MAIVLMIRPAGLFGREK 294


>ref|YP_293151.1| inner-membrane translocator [Ralstonia eutropha JMP134]
 gb|AAZ65294.1| amino acid/amide ABC transporter membrane protein 1, HAAT family
           [Ralstonia eutropha JMP134]
          Length = 295

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 74/77 (96%)

Query: 1   VIQVSPLMGSNLIIVVFAVVVIGGMGSILGSIVTGLGLGVIEGLTRVFYPELSATVVFII 60
           +IQVSPLMGSNLII VFAVVVIGGMGSI+GSIVTGLGLGVIEG TRVFYPELSATVVFI+
Sbjct: 219 IIQVSPLMGSNLIITVFAVVVIGGMGSIIGSIVTGLGLGVIEGFTRVFYPELSATVVFIL 278

Query: 61  MAIVLMIRPAGLFGKEK 77
           MA++L++RP+GLFGK+ 
Sbjct: 279 MAVILLVRPSGLFGKDN 295


>ref|YP_003750803.1| branched-chain amino acid transport system permease, membrane
           component (livH) [Ralstonia solanacearum PSI07]
 emb|CBJ49481.1| putative Branched-chain amino acid transport system permease,
           membrane component (livH) [Ralstonia solanacearum PSI07]
 emb|CCA80718.1| putative Branched-chain amino acid transport system permease,
           membrane component (livH) [blood disease bacterium R229]
 emb|CCA85722.1| putative Branched-chain amino acid transport system permease,
           membrane component (livH) [Ralstonia syzygii R24]
          Length = 294

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 74/77 (96%)

Query: 1   VIQVSPLMGSNLIIVVFAVVVIGGMGSILGSIVTGLGLGVIEGLTRVFYPELSATVVFII 60
           VIQ+SPLMG N+II VFAVVVIGGMGSILGSIVTGLGLGVIEGLT+VFYP+ S+TVVF+I
Sbjct: 218 VIQISPLMGQNMIITVFAVVVIGGMGSILGSIVTGLGLGVIEGLTKVFYPQASSTVVFVI 277

Query: 61  MAIVLMIRPAGLFGKEK 77
           MA+VL++RPAGLFGKEK
Sbjct: 278 MALVLLVRPAGLFGKEK 294


>ref|YP_003744089.1| branched-chain amino acid transporter permease, membrane component
           (livh) [Ralstonia solanacearum CFBP2957]
 emb|CBJ41440.1| putative Branched-chain amino acid transport system permease,
           membrane component (livH) [Ralstonia solanacearum
           CFBP2957]
          Length = 294

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 74/77 (96%)

Query: 1   VIQVSPLMGSNLIIVVFAVVVIGGMGSILGSIVTGLGLGVIEGLTRVFYPELSATVVFII 60
           VIQ+SPLMG N+II VFAVVVIGGMGSILGSIVTGLGLGVIEGLT+VFYP+ S+TVVF+I
Sbjct: 218 VIQISPLMGQNMIITVFAVVVIGGMGSILGSIVTGLGLGVIEGLTKVFYPQASSTVVFVI 277

Query: 61  MAIVLMIRPAGLFGKEK 77
           MA+VL++RPAGLFGKEK
Sbjct: 278 MALVLLVRPAGLFGKEK 294