BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0193.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778161.1| amino acid ABC transporter permease [Herbasp... 523 e-146 ref|YP_004755051.1| branched-chain amino acid ABC transporter pe... 511 e-143 ref|ZP_08272539.1| ABC-type branched-chain amino acid transport ... 472 e-131 ref|YP_297569.1| inner-membrane translocator [Ralstonia eutropha... 454 e-126 ref|ZP_01914816.1| ABC-type transporter, permease component [Lim... 452 e-125 >ref|YP_003778161.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66253.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 271/308 (87%), Positives = 289/308 (93%), Gaps = 1/308 (0%) Query: 5 LNKKLFYGALLILALLAPFGLYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFFGGA 64 +NKK+ LLIL L APFG+YPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAF G A Sbjct: 1 MNKKIGIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA 60 Query: 65 GYVAGQAIKAWGVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 124 GY+ GQA+K WG+PTE+GLI+GTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA Sbjct: 61 GYMCGQALKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 120 Query: 125 LQAPFTGGEDGLQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLK 184 LQAPFTGGEDGLQG+PRGKLLGF++L SDMTLYYVVLAIA+AGFALIVRTIHSPFGQVLK Sbjct: 121 LQAPFTGGEDGLQGVPRGKLLGFLNLESDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLK 180 Query: 185 AIKENEPRAISLGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVL 244 AIKENEPRAISLGYDV RYKLLAFVLSA L+GLAG+TK L+LGFETLTDVHWSMSGLVVL Sbjct: 181 AIKENEPRAISLGYDVARYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVL 240 Query: 245 MTLVGGLGTIVGPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIV 304 MTLVGGLGTI+GPIVGAVIIIMLENKLGDIG WLASVTHI+WFNTLGDSVTIVTGFIFIV Sbjct: 241 MTLVGGLGTILGPIVGAVIIIMLENKLGDIGAWLASVTHIDWFNTLGDSVTIVTGFIFIV 300 Query: 305 SCSLLRRR 312 C L R+ Sbjct: 301 -CVLAFRK 307 >ref|YP_004755051.1| branched-chain amino acid ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK64228.1| ABC-type branched-chain amino acid transport system, permease component [Collimonas fungivorans Ter331] Length = 335 Score = 511 bits (1316), Expect = e-143, Method: Compositional matrix adjust. Identities = 265/329 (80%), Positives = 294/329 (89%), Gaps = 8/329 (2%) Query: 1 MNNPLNKKLFYGALLILALLAPFGLYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAF 60 MN +NKK+ YG LL AL APFG+YPVFLMK++CFALFACAFNLLIG+TGLLSFGHAAF Sbjct: 8 MNAIVNKKIGYGLLLAAALAAPFGIYPVFLMKIICFALFACAFNLLIGFTGLLSFGHAAF 67 Query: 61 FGGAGYVAGQAIKAWGVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQML 120 FGGAGY+AG A++ G+PTE+GL+ GT TGALIGLVMG LAIRRQGIYFTMITLALAQML Sbjct: 68 FGGAGYIAGYALQTLGLPTEVGLLAGTATGALIGLVMGSLAIRRQGIYFTMITLALAQML 127 Query: 121 FFVALQAPFTGGEDGLQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFG 180 +FV LQ PFTGGEDGLQG+PRG LLGFIDL SD+TLYYVVLAIA+AGFALI+RT++SPFG Sbjct: 128 YFVCLQMPFTGGEDGLQGVPRGHLLGFIDLGSDLTLYYVVLAIAVAGFALIMRTVNSPFG 187 Query: 181 QVLKAIKENEPRAISLGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSG 240 QVLKAIKENEPRAISLGYDV+RYKLLAFVLSAAL+GLAGSTK L+LGFETLTDVHW+MSG Sbjct: 188 QVLKAIKENEPRAISLGYDVNRYKLLAFVLSAALSGLAGSTKTLVLGFETLTDVHWTMSG 247 Query: 241 LVVLMTLVGGLGTIVGPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGF 300 LVVLMTLVGGLGTI+GPIVGA+III+LENKLGDIGNWLASVTHI+WFN LG+SVTIVTGF Sbjct: 248 LVVLMTLVGGLGTIIGPIVGALIIIVLENKLGDIGNWLASVTHIDWFNGLGESVTIVTGF 307 Query: 301 IFIVSCSLLRRR-------RLCRRSGDQG 322 IFIV C L RR L +RS G Sbjct: 308 IFIV-CVLAFRRGIVGEISALLKRSSRTG 335 >ref|ZP_08272539.1| ABC-type branched-chain amino acid transport system, permease component [Oxalobacteraceae bacterium IMCC9480] gb|EGF33987.1| ABC-type branched-chain amino acid transport system, permease component [Oxalobacteraceae bacterium IMCC9480] Length = 320 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 242/308 (78%), Positives = 268/308 (87%), Gaps = 1/308 (0%) Query: 5 LNKKLFYGALLILALLAPFGLYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFFGGA 64 +NKK+ Y +L L APF LYPVFLMK+LCFALFACAFNLLIG+TGLLSFGHAAFFGGA Sbjct: 1 MNKKIGYVIVLAALLAAPFWLYPVFLMKVLCFALFACAFNLLIGFTGLLSFGHAAFFGGA 60 Query: 65 GYVAGQAIKAWGVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 124 GYVAG A+ G+P E+G++LGTL GALIGL MG AIRRQGIYFTMITLALAQML+FV Sbjct: 61 GYVAGYAMATLGLPPEVGILLGTLAGALIGLFMGSFAIRRQGIYFTMITLALAQMLYFVF 120 Query: 125 LQAPFTGGEDGLQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLK 184 LQA FTGGEDGLQG+PRGKLLGFIDLS+D+TLYYVV+ IA+ GFA+I+R +HS FGQVLK Sbjct: 121 LQAKFTGGEDGLQGVPRGKLLGFIDLSNDLTLYYVVMLIAVGGFAVIMRVVHSHFGQVLK 180 Query: 185 AIKENEPRAISLGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVL 244 AIKENEPRAISLGYDVDRYKLLAFVLSA L+GLAG+TK L+LGFETLTDVHWSMSGLVVL Sbjct: 181 AIKENEPRAISLGYDVDRYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVL 240 Query: 245 MTLVGGLGTIVGPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIV 304 MTLVGGLGT+ GPIVGAVIII LENKLG G WLA+ T IEWF T+G SVTIV G IFI+ Sbjct: 241 MTLVGGLGTLSGPIVGAVIIIALENKLGSYGTWLANFTSIEWFRTIGQSVTIVIGLIFII 300 Query: 305 SCSLLRRR 312 C L RR Sbjct: 301 -CVLAFRR 307 >ref|YP_297569.1| inner-membrane translocator [Ralstonia eutropha JMP134] gb|AAZ62725.1| amino acid/amide ABC transporter membrane protein 2, HAAT family [Ralstonia eutropha JMP134] Length = 342 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 225/289 (77%), Positives = 255/289 (88%), Gaps = 1/289 (0%) Query: 24 GLYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFFGGAGYVAGQAIKAWGVPTEIGL 83 G YPVF++K+LCFALFACAFNLLIGYTGLLSFGHAAFFGGAGY++G+A+K WGV EIGL Sbjct: 40 GAYPVFVLKVLCFALFACAFNLLIGYTGLLSFGHAAFFGGAGYISGEAMKVWGVTPEIGL 99 Query: 84 ILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGLQGIPRGK 143 ILGT GA IG V+G LAIRRQGIYF+MITLALAQMLFF+ LQAPFTGGEDGLQGIPRGK Sbjct: 100 ILGTAGGAAIGYVVGSLAIRRQGIYFSMITLALAQMLFFICLQAPFTGGEDGLQGIPRGK 159 Query: 144 LLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVDRY 203 L G + LS D+TLYYV L I +A FALIVRT+HSPFGQ+LKAIKENEPRAISLGYDVDR+ Sbjct: 160 LFGVLSLSDDLTLYYVALVIIVAAFALIVRTVHSPFGQILKAIKENEPRAISLGYDVDRF 219 Query: 204 KLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIVGPIVGAVI 263 KL AFVLSAAL+GLAGS KAL+LGFETLTDVHWSMSG V+LMTLVGGLGT+ GPIVGA + Sbjct: 220 KLTAFVLSAALSGLAGSIKALVLGFETLTDVHWSMSGSVILMTLVGGLGTLSGPIVGAFV 279 Query: 264 IIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVSCSLLRRR 312 ++ LENKLGDIG +LAS T +WFN+LG+SVT+V G IF++ C L RR Sbjct: 280 VVALENKLGDIGAFLASATGFQWFNSLGESVTMVIGAIFVI-CVLTFRR 327 >ref|ZP_01914816.1| ABC-type transporter, permease component [Limnobacter sp. MED105] gb|EDM84132.1| ABC-type transporter, permease component [Limnobacter sp. MED105] Length = 328 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 224/290 (77%), Positives = 253/290 (87%) Query: 22 PFGLYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFFGGAGYVAGQAIKAWGVPTEI 81 PF +YPV LMK+LCFALFACAFNLLIGYTGLLSFGHAAF GGAGY+AG I+ G+P E+ Sbjct: 20 PFFMYPVLLMKLLCFALFACAFNLLIGYTGLLSFGHAAFLGGAGYIAGYVIRDLGLPFEL 79 Query: 82 GLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGLQGIPR 141 GL+ G A +GLVMG LAIRRQGIYFTMITLALAQML+F+ LQAPFTGGEDGLQGIPR Sbjct: 80 GLLAGVAFAAFLGLVMGALAIRRQGIYFTMITLALAQMLYFIFLQAPFTGGEDGLQGIPR 139 Query: 142 GKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVD 201 G LLG +DLS D+TLY+VVLAI IAG+ALIVRT+HSPFGQVLKAIKENEPRAISLGYDVD Sbjct: 140 GTLLGVVDLSDDLTLYFVVLAICIAGYALIVRTVHSPFGQVLKAIKENEPRAISLGYDVD 199 Query: 202 RYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIVGPIVGA 261 +YKLL FVLSAAL+GLAG+TKA +LGFETLTDVHW+MSGLVVLMTLVGGLGT+ GPIVGA Sbjct: 200 KYKLLVFVLSAALSGLAGATKASVLGFETLTDVHWTMSGLVVLMTLVGGLGTLAGPIVGA 259 Query: 262 VIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVSCSLLRR 311 ++II LEN++G+ G W+A T I WF +LG+ VTIVTGFIFIV RR Sbjct: 260 IVIIALENRIGEFGTWMAVTTDIAWFRSLGEQVTIVTGFIFIVVVLAFRR 309