BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0192.p (436 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778161.1| amino acid ABC transporter permease [Herbasp... 489 e-136 ref|YP_004755051.1| branched-chain amino acid ABC transporter pe... 465 e-129 ref|ZP_08272539.1| ABC-type branched-chain amino acid transport ... 428 e-118 ref|YP_297569.1| inner-membrane translocator [Ralstonia eutropha... 424 e-116 ref|ZP_01914816.1| ABC-type transporter, permease component [Lim... 416 e-114 >ref|YP_003778161.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66253.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 255/315 (80%), Positives = 274/315 (86%), Gaps = 10/315 (3%) Query: 122 YDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSGHAAFFGGAGYVAGQAIKAW 181 Y V K+L F L A L++G+ L GHAAF G AGY+ GQA+K W Sbjct: 22 YPVFLMKMLCFALFAC-------AFNLLIGYTGLLSF---GHAAFLGWAGYMCGQALKVW 71 Query: 182 GVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDG 241 G+PTE+GLI+GTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDG Sbjct: 72 GLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDG 131 Query: 242 LQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAIS 301 LQG+PRGKLLGF++L SDMTLYYVVLAIA+AGFALIVRTIHSPFGQVLKAIKENEPRAIS Sbjct: 132 LQGVPRGKLLGFLNLESDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLKAIKENEPRAIS 191 Query: 302 LGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIV 361 LGYDV RYKLLAFVLSA L+GLAG+TK L+LGFETLTDVHWSMSGLVVLMTLVGGLGTI+ Sbjct: 192 LGYDVARYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVLMTLVGGLGTIL 251 Query: 362 GPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVCVLAFRRGIVG 421 GPIVGAVIIIMLENKLGDIG WLASVTHI+WFNTLGDSVTIVTGFIFIVCVLAFR+GIVG Sbjct: 252 GPIVGAVIIIMLENKLGDIGAWLASVTHIDWFNTLGDSVTIVTGFIFIVCVLAFRKGIVG 311 Query: 422 EILNLFNKRSASASH 436 EIL L K AS SH Sbjct: 312 EILALTRKGQASGSH 326 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 147/161 (91%), Positives = 157/161 (97%) Query: 1 VPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGL 60 +PTE+GLI+GTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGL Sbjct: 73 LPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGL 132 Query: 61 QGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISL 120 QG+PRGKLLGF++L SDMTLYYVVLAIA+AGFALIVRTIHSPFGQVLKAIKENEPRAISL Sbjct: 133 QGVPRGKLLGFLNLESDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLKAIKENEPRAISL 192 Query: 121 GYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWS 161 GYDV RYKLLAFVLSA L+GLAG+TK L+LGFETLTDVHWS Sbjct: 193 GYDVARYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHWS 233 >ref|YP_004755051.1| branched-chain amino acid ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK64228.1| ABC-type branched-chain amino acid transport system, permease component [Collimonas fungivorans Ter331] Length = 335 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 240/312 (76%), Positives = 268/312 (85%), Gaps = 10/312 (3%) Query: 122 YDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSGHAAFFGGAGYVAGQAIKAW 181 Y V K++ F L A L++GF L GHAAFFGGAGY+AG A++ Sbjct: 33 YPVFLMKIICFALFAC-------AFNLLIGFTGLLSF---GHAAFFGGAGYIAGYALQTL 82 Query: 182 GVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDG 241 G+PTE+GL+ GT TGALIGLVMG LAIRRQGIYFTMITLALAQML+FV LQ PFTGGEDG Sbjct: 83 GLPTEVGLLAGTATGALIGLVMGSLAIRRQGIYFTMITLALAQMLYFVCLQMPFTGGEDG 142 Query: 242 LQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAIS 301 LQG+PRG LLGFIDL SD+TLYYVVLAIA+AGFALI+RT++SPFGQVLKAIKENEPRAIS Sbjct: 143 LQGVPRGHLLGFIDLGSDLTLYYVVLAIAVAGFALIMRTVNSPFGQVLKAIKENEPRAIS 202 Query: 302 LGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIV 361 LGYDV+RYKLLAFVLSAAL+GLAGSTK L+LGFETLTDVHW+MSGLVVLMTLVGGLGTI+ Sbjct: 203 LGYDVNRYKLLAFVLSAALSGLAGSTKTLVLGFETLTDVHWTMSGLVVLMTLVGGLGTII 262 Query: 362 GPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVCVLAFRRGIVG 421 GPIVGA+III+LENKLGDIGNWLASVTHI+WFN LG+SVTIVTGFIFIVCVLAFRRGIVG Sbjct: 263 GPIVGALIIIVLENKLGDIGNWLASVTHIDWFNGLGESVTIVTGFIFIVCVLAFRRGIVG 322 Query: 422 EILNLFNKRSAS 433 EI L + S + Sbjct: 323 EISALLKRSSRT 334 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 139/161 (86%), Positives = 153/161 (95%) Query: 1 VPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGL 60 +PTE+GL+ GT TGALIGLVMG LAIRRQGIYFTMITLALAQML+FV LQ PFTGGEDGL Sbjct: 84 LPTEVGLLAGTATGALIGLVMGSLAIRRQGIYFTMITLALAQMLYFVCLQMPFTGGEDGL 143 Query: 61 QGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISL 120 QG+PRG LLGFIDL SD+TLYYVVLAIA+AGFALI+RT++SPFGQVLKAIKENEPRAISL Sbjct: 144 QGVPRGHLLGFIDLGSDLTLYYVVLAIAVAGFALIMRTVNSPFGQVLKAIKENEPRAISL 203 Query: 121 GYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWS 161 GYDV+RYKLLAFVLSAAL+GLAGSTK L+LGFETLTDVHW+ Sbjct: 204 GYDVNRYKLLAFVLSAALSGLAGSTKTLVLGFETLTDVHWT 244 >ref|ZP_08272539.1| ABC-type branched-chain amino acid transport system, permease component [Oxalobacteraceae bacterium IMCC9480] gb|EGF33987.1| ABC-type branched-chain amino acid transport system, permease component [Oxalobacteraceae bacterium IMCC9480] Length = 320 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 224/309 (72%), Positives = 250/309 (80%), Gaps = 10/309 (3%) Query: 122 YDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSGHAAFFGGAGYVAGQAIKAW 181 Y V K+L F L A L++GF L GHAAFFGGAGYVAG A+ Sbjct: 22 YPVFLMKVLCFALFAC-------AFNLLIGFTGLLSF---GHAAFFGGAGYVAGYAMATL 71 Query: 182 GVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDG 241 G+P E+G++LGTL GALIGL MG AIRRQGIYFTMITLALAQML+FV LQA FTGGEDG Sbjct: 72 GLPPEVGILLGTLAGALIGLFMGSFAIRRQGIYFTMITLALAQMLYFVFLQAKFTGGEDG 131 Query: 242 LQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAIS 301 LQG+PRGKLLGFIDLS+D+TLYYVV+ IA+ GFA+I+R +HS FGQVLKAIKENEPRAIS Sbjct: 132 LQGVPRGKLLGFIDLSNDLTLYYVVMLIAVGGFAVIMRVVHSHFGQVLKAIKENEPRAIS 191 Query: 302 LGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIV 361 LGYDVDRYKLLAFVLSA L+GLAG+TK L+LGFETLTDVHWSMSGLVVLMTLVGGLGT+ Sbjct: 192 LGYDVDRYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVLMTLVGGLGTLS 251 Query: 362 GPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVCVLAFRRGIVG 421 GPIVGAVIII LENKLG G WLA+ T IEWF T+G SVTIV G IFI+CVLAFRRGIVG Sbjct: 252 GPIVGAVIIIALENKLGSYGTWLANFTSIEWFRTIGQSVTIVIGLIFIICVLAFRRGIVG 311 Query: 422 EILNLFNKR 430 E+ F + Sbjct: 312 ELAARFKRH 320 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 132/161 (81%), Positives = 148/161 (91%) Query: 1 VPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGL 60 +P E+G++LGTL GALIGL MG AIRRQGIYFTMITLALAQML+FV LQA FTGGEDGL Sbjct: 73 LPPEVGILLGTLAGALIGLFMGSFAIRRQGIYFTMITLALAQMLYFVFLQAKFTGGEDGL 132 Query: 61 QGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISL 120 QG+PRGKLLGFIDLS+D+TLYYVV+ IA+ GFA+I+R +HS FGQVLKAIKENEPRAISL Sbjct: 133 QGVPRGKLLGFIDLSNDLTLYYVVMLIAVGGFAVIMRVVHSHFGQVLKAIKENEPRAISL 192 Query: 121 GYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWS 161 GYDVDRYKLLAFVLSA L+GLAG+TK L+LGFETLTDVHWS Sbjct: 193 GYDVDRYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHWS 233 >ref|YP_297569.1| inner-membrane translocator [Ralstonia eutropha JMP134] gb|AAZ62725.1| amino acid/amide ABC transporter membrane protein 2, HAAT family [Ralstonia eutropha JMP134] Length = 342 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 212/300 (70%), Positives = 247/300 (82%), Gaps = 3/300 (1%) Query: 132 FVLSAALTGLAGSTKALILGFETLTDVHWSGHAAFFGGAGYVAGQAIKAWGVPTEIGLIL 191 FVL L L++G+ L GHAAFFGGAGY++G+A+K WGV EIGLIL Sbjct: 45 FVLKVLCFALFACAFNLLIGYTGLLSF---GHAAFFGGAGYISGEAMKVWGVTPEIGLIL 101 Query: 192 GTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGLQGIPRGKLL 251 GT GA IG V+G LAIRRQGIYF+MITLALAQMLFF+ LQAPFTGGEDGLQGIPRGKL Sbjct: 102 GTAGGAAIGYVVGSLAIRRQGIYFSMITLALAQMLFFICLQAPFTGGEDGLQGIPRGKLF 161 Query: 252 GFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVDRYKL 311 G + LS D+TLYYV L I +A FALIVRT+HSPFGQ+LKAIKENEPRAISLGYDVDR+KL Sbjct: 162 GVLSLSDDLTLYYVALVIIVAAFALIVRTVHSPFGQILKAIKENEPRAISLGYDVDRFKL 221 Query: 312 LAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIVGPIVGAVIII 371 AFVLSAAL+GLAGS KAL+LGFETLTDVHWSMSG V+LMTLVGGLGT+ GPIVGA +++ Sbjct: 222 TAFVLSAALSGLAGSIKALVLGFETLTDVHWSMSGSVILMTLVGGLGTLSGPIVGAFVVV 281 Query: 372 MLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVCVLAFRRGIVGEILNLFNKRS 431 LENKLGDIG +LAS T +WFN+LG+SVT+V G IF++CVL FRRGI+GE++ LF ++ Sbjct: 282 ALENKLGDIGAFLASATGFQWFNSLGESVTMVIGAIFVICVLTFRRGIMGELIALFGRKQ 341 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 132/161 (81%), Positives = 143/161 (88%) Query: 1 VPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGL 60 V EIGLILGT GA IG V+G LAIRRQGIYF+MITLALAQMLFF+ LQAPFTGGEDGL Sbjct: 93 VTPEIGLILGTAGGAAIGYVVGSLAIRRQGIYFSMITLALAQMLFFICLQAPFTGGEDGL 152 Query: 61 QGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISL 120 QGIPRGKL G + LS D+TLYYV L I +A FALIVRT+HSPFGQ+LKAIKENEPRAISL Sbjct: 153 QGIPRGKLFGVLSLSDDLTLYYVALVIIVAAFALIVRTVHSPFGQILKAIKENEPRAISL 212 Query: 121 GYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWS 161 GYDVDR+KL AFVLSAAL+GLAGS KAL+LGFETLTDVHWS Sbjct: 213 GYDVDRFKLTAFVLSAALSGLAGSIKALVLGFETLTDVHWS 253 >ref|ZP_01914816.1| ABC-type transporter, permease component [Limnobacter sp. MED105] gb|EDM84132.1| ABC-type transporter, permease component [Limnobacter sp. MED105] Length = 328 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 217/315 (68%), Positives = 249/315 (79%), Gaps = 10/315 (3%) Query: 122 YDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSGHAAFFGGAGYVAGQAIKAW 181 Y V KLL F L A L++G+ L GHAAF GGAGY+AG I+ Sbjct: 24 YPVLLMKLLCFALFA-------CAFNLLIGYTGLLSF---GHAAFLGGAGYIAGYVIRDL 73 Query: 182 GVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDG 241 G+P E+GL+ G A +GLVMG LAIRRQGIYFTMITLALAQML+F+ LQAPFTGGEDG Sbjct: 74 GLPFELGLLAGVAFAAFLGLVMGALAIRRQGIYFTMITLALAQMLYFIFLQAPFTGGEDG 133 Query: 242 LQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAIS 301 LQGIPRG LLG +DLS D+TLY+VVLAI IAG+ALIVRT+HSPFGQVLKAIKENEPRAIS Sbjct: 134 LQGIPRGTLLGVVDLSDDLTLYFVVLAICIAGYALIVRTVHSPFGQVLKAIKENEPRAIS 193 Query: 302 LGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIV 361 LGYDVD+YKLL FVLSAAL+GLAG+TKA +LGFETLTDVHW+MSGLVVLMTLVGGLGT+ Sbjct: 194 LGYDVDKYKLLVFVLSAALSGLAGATKASVLGFETLTDVHWTMSGLVVLMTLVGGLGTLA 253 Query: 362 GPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVCVLAFRRGIVG 421 GPIVGA++II LEN++G+ G W+A T I WF +LG+ VTIVTGFIFIV VLAFRRGIVG Sbjct: 254 GPIVGAIVIIALENRIGEFGTWMAVTTDIAWFRSLGEQVTIVTGFIFIVVVLAFRRGIVG 313 Query: 422 EILNLFNKRSASASH 436 EI+ +R A Sbjct: 314 EIIAWNQRRLLKAGQ 328 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 130/161 (80%), Positives = 146/161 (90%) Query: 1 VPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGL 60 +P E+GL+ G A +GLVMG LAIRRQGIYFTMITLALAQML+F+ LQAPFTGGEDGL Sbjct: 75 LPFELGLLAGVAFAAFLGLVMGALAIRRQGIYFTMITLALAQMLYFIFLQAPFTGGEDGL 134 Query: 61 QGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISL 120 QGIPRG LLG +DLS D+TLY+VVLAI IAG+ALIVRT+HSPFGQVLKAIKENEPRAISL Sbjct: 135 QGIPRGTLLGVVDLSDDLTLYFVVLAICIAGYALIVRTVHSPFGQVLKAIKENEPRAISL 194 Query: 121 GYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWS 161 GYDVD+YKLL FVLSAAL+GLAG+TKA +LGFETLTDVHW+ Sbjct: 195 GYDVDKYKLLVFVLSAALSGLAGATKASVLGFETLTDVHWT 235