BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0189.p (273 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002942273.1| periplasmic binding protein/LacI transcripti... 391 e-107 ref|YP_004152691.1| periplasmic binding protein/laci transcripti... 388 e-106 ref|ZP_02388721.1| ribose ABC transporter, periplasmic ribose-bi... 381 e-104 ref|ZP_02374801.1| ribose ABC transporter, periplasmic ribose-bi... 380 e-103 ref|YP_442956.1| ribose ABC transporter periplasmic ribose-bindi... 378 e-103 >ref|YP_002942273.1| periplasmic binding protein/LacI transcriptional regulator [Variovorax paradoxus S110] gb|ACS17007.1| periplasmic binding protein/LacI transcriptional regulator [Variovorax paradoxus S110] Length = 306 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/252 (75%), Positives = 221/252 (87%) Query: 22 AASIGATLIVTDARHDIAKQTSDVEDLIQKKIDILLLNPTDSVGIQSAVKSAKKAGIVVV 81 AASIGAT++ TDARHD+AKQ DVED+IQKKIDILLLNPTDS G+QSAV+SAKKAG++VV Sbjct: 55 AASIGATVVTTDARHDVAKQIGDVEDMIQKKIDILLLNPTDSTGVQSAVRSAKKAGLIVV 114 Query: 82 TVDANAQGPVDSFVGSKNFDAGQAACTYLANTLKGKGDVAILDGIPVVPILERVRGCKAA 141 VDANAQGPVDSFVGSKN DAG+ AC YLA ++ KGDVAILDGIPVVPILERV+GC+ A Sbjct: 115 AVDANAQGPVDSFVGSKNTDAGRLACEYLAKSIGEKGDVAILDGIPVVPILERVKGCREA 174 Query: 142 FANFPGIKLVATQNGKQERDQALSVTENILQSHPKLQGMFSVNDIGALGALSAIESSGKD 201 A +PGIK+V+TQNGKQER AL+VTENILQ++ L+G+FSVND G++GAL+AIE+SGKD Sbjct: 175 LAKYPGIKVVSTQNGKQERATALTVTENILQANKDLKGIFSVNDGGSMGALAAIEASGKD 234 Query: 202 VKLVSVDGAPDAIKAILKSNAKFIATAAQYPRDQIRLALGVALAKKWGAATPAAVPVDIK 261 VKL SVDGAP+AIKA+ K +KFIAT AQYPRDQIRLA+G+ALAKKWGA PAAVPVD+K Sbjct: 235 VKLASVDGAPEAIKAMQKPGSKFIATTAQYPRDQIRLAIGIALAKKWGANVPAAVPVDVK 294 Query: 262 LIDKAQAAGFSW 273 LID A FSW Sbjct: 295 LIDAEGAKTFSW 306 >ref|YP_004152691.1| periplasmic binding protein/laci transcriptional regulator [Variovorax paradoxus EPS] gb|ADU34580.1| periplasmic binding protein/LacI transcriptional regulator [Variovorax paradoxus EPS] Length = 306 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/252 (74%), Positives = 221/252 (87%) Query: 22 AASIGATLIVTDARHDIAKQTSDVEDLIQKKIDILLLNPTDSVGIQSAVKSAKKAGIVVV 81 AASIGAT++ TDARHD+AKQ DVED+IQKK+DILLLNPTDS G+QSAV+SAKKAG+VVV Sbjct: 55 AASIGATVVTTDARHDVAKQIGDVEDMIQKKVDILLLNPTDSTGVQSAVRSAKKAGLVVV 114 Query: 82 TVDANAQGPVDSFVGSKNFDAGQAACTYLANTLKGKGDVAILDGIPVVPILERVRGCKAA 141 VDANAQGPVDSFVGSKN DAG+ AC YLA ++ KGDVAILDGIPVVPILERV+GC+ A Sbjct: 115 AVDANAQGPVDSFVGSKNTDAGRLACEYLAKSIGEKGDVAILDGIPVVPILERVKGCREA 174 Query: 142 FANFPGIKLVATQNGKQERDQALSVTENILQSHPKLQGMFSVNDIGALGALSAIESSGKD 201 A +PGIK+V+TQNGKQER AL+VTENILQ++ L+G+FSVND G++GAL+AI++SGKD Sbjct: 175 LAKYPGIKVVSTQNGKQERATALTVTENILQANKDLKGIFSVNDGGSMGALAAIDASGKD 234 Query: 202 VKLVSVDGAPDAIKAILKSNAKFIATAAQYPRDQIRLALGVALAKKWGAATPAAVPVDIK 261 VKL SVDGAP+AIKA+ K +KFIAT AQYPRDQIRLA+G+ALAKKWGA PAAVPVD+K Sbjct: 235 VKLASVDGAPEAIKAMQKPGSKFIATTAQYPRDQIRLAIGIALAKKWGANVPAAVPVDVK 294 Query: 262 LIDKAQAAGFSW 273 LID A F+W Sbjct: 295 LIDAEGAKTFTW 306 >ref|ZP_02388721.1| ribose ABC transporter, periplasmic ribose-binding protein [Burkholderia thailandensis Bt4] Length = 316 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/252 (71%), Positives = 215/252 (85%) Query: 22 AASIGATLIVTDARHDIAKQTSDVEDLIQKKIDILLLNPTDSVGIQSAVKSAKKAGIVVV 81 AASIGA +IVTDA HD++KQ SDVED++QKKIDILL+NPTDS GIQSAV SAKKAG VV+ Sbjct: 65 AASIGAQVIVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAVVI 124 Query: 82 TVDANAQGPVDSFVGSKNFDAGQAACTYLANTLKGKGDVAILDGIPVVPILERVRGCKAA 141 VDANA GPVD+FVGSKNFDAG +C YLA + G G+VAILDGIPVVPILERVRGC+AA Sbjct: 125 AVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGSGEVAILDGIPVVPILERVRGCRAA 184 Query: 142 FANFPGIKLVATQNGKQERDQALSVTENILQSHPKLQGMFSVNDIGALGALSAIESSGKD 201 A FP +K+V QNGKQER AL+VTEN++Q+HP L+G+FSVND G++GALSAIE+SGKD Sbjct: 185 LAKFPNVKIVDVQNGKQERASALTVTENMIQAHPLLKGVFSVNDGGSMGALSAIEASGKD 244 Query: 202 VKLVSVDGAPDAIKAILKSNAKFIATAAQYPRDQIRLALGVALAKKWGAATPAAVPVDIK 261 +KL SVDGAP+AI A+ K N+KFI T+AQ+PRDQIRLA+G+ LAKKWGA P A+PVD+K Sbjct: 245 IKLTSVDGAPEAIAAMQKPNSKFIETSAQFPRDQIRLAIGIGLAKKWGAHVPKAIPVDVK 304 Query: 262 LIDKAQAAGFSW 273 LID+ A FSW Sbjct: 305 LIDRGNAKTFSW 316 >ref|ZP_02374801.1| ribose ABC transporter, periplasmic ribose-binding protein [Burkholderia thailandensis TXDOH] Length = 316 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/252 (71%), Positives = 215/252 (85%) Query: 22 AASIGATLIVTDARHDIAKQTSDVEDLIQKKIDILLLNPTDSVGIQSAVKSAKKAGIVVV 81 AASIGA +IVTDA HD++KQ SDVED++QKKIDILL+NPTDS GIQSAV SAKKAG VV+ Sbjct: 65 AASIGAQVIVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAVVI 124 Query: 82 TVDANAQGPVDSFVGSKNFDAGQAACTYLANTLKGKGDVAILDGIPVVPILERVRGCKAA 141 VDANA GPVD+FVGSKNFDAG +C YLA + G G+VAILDGIPVVPILERVRGC+AA Sbjct: 125 AVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGSGEVAILDGIPVVPILERVRGCRAA 184 Query: 142 FANFPGIKLVATQNGKQERDQALSVTENILQSHPKLQGMFSVNDIGALGALSAIESSGKD 201 A FP +K+V QNGKQER AL+VTEN++Q+HP L+G+FSVND G++GALSAIE+SGKD Sbjct: 185 LAKFPNVKIVDVQNGKQERASALTVTENMIQAHPLLKGVFSVNDGGSMGALSAIEASGKD 244 Query: 202 VKLVSVDGAPDAIKAILKSNAKFIATAAQYPRDQIRLALGVALAKKWGAATPAAVPVDIK 261 +KL SVDGAP+AI A+ K N+KFI T+AQ+PRDQIRLA+G+ LAKKWGA P A+PVD+K Sbjct: 245 IKLTSVDGAPEAIAAMQKPNSKFIETSAQFPRDQIRLAIGIGLAKKWGANVPKAIPVDVK 304 Query: 262 LIDKAQAAGFSW 273 LID+ A FSW Sbjct: 305 LIDRGNAKTFSW 316 >ref|YP_442956.1| ribose ABC transporter periplasmic ribose-binding protein [Burkholderia thailandensis E264] ref|ZP_05587439.1| ribose ABC transporter, periplasmic ribose-binding protein [Burkholderia thailandensis E264] gb|ABC36378.1| ribose ABC transporter, periplasmic ribose-binding protein [Burkholderia thailandensis E264] Length = 316 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/252 (71%), Positives = 214/252 (84%) Query: 22 AASIGATLIVTDARHDIAKQTSDVEDLIQKKIDILLLNPTDSVGIQSAVKSAKKAGIVVV 81 AASIGA +IVTDA HD++KQ SDVED++QKKIDILL+NPTDS GIQSAV SAKKAG VV+ Sbjct: 65 AASIGAQVIVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAVVI 124 Query: 82 TVDANAQGPVDSFVGSKNFDAGQAACTYLANTLKGKGDVAILDGIPVVPILERVRGCKAA 141 VDANA GPVD+FVGSKNFDAG +C YLA + G G+VAILDGIPVVPILERVRGC+AA Sbjct: 125 AVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGSGEVAILDGIPVVPILERVRGCRAA 184 Query: 142 FANFPGIKLVATQNGKQERDQALSVTENILQSHPKLQGMFSVNDIGALGALSAIESSGKD 201 A FP +K+V QNGKQER AL+VTEN++Q+HP L+G+FSVND G++GALSAIE+SGKD Sbjct: 185 LAKFPNVKIVDVQNGKQERASALTVTENMIQAHPLLKGVFSVNDGGSMGALSAIEASGKD 244 Query: 202 VKLVSVDGAPDAIKAILKSNAKFIATAAQYPRDQIRLALGVALAKKWGAATPAAVPVDIK 261 +KL SVDGAP+AI A+ K N+K I T+AQ+PRDQIRLA+G+ LAKKWGA P A+PVD+K Sbjct: 245 IKLTSVDGAPEAIAAMQKPNSKLIETSAQFPRDQIRLAIGIGLAKKWGAHVPKAIPVDVK 304 Query: 262 LIDKAQAAGFSW 273 LID+ A FSW Sbjct: 305 LIDRGNAKTFSW 316