BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0173.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001354771.1| AraC family transcriptional regulator [Janth... 454 e-126 ref|YP_351127.1| transcriptional regulator [Pseudomonas fluoresc... 417 e-114 ref|YP_002875328.1| putative regulatory protein [Pseudomonas flu... 416 e-114 ref|ZP_07778189.1| transcriptional regulator, AraC family [Pseud... 414 e-113 gb|EGP46004.1| transcriptional regulator [Achromobacter xylosoxi... 407 e-111 >ref|YP_001354771.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR89562.1| transcriptional regulator, AraC family [Janthinobacterium sp. Marseille] Length = 322 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/318 (67%), Positives = 257/318 (80%) Query: 1 MPTVALLVFPGVQALDVSGPLDVFAEANRFLLPQQHYHLSVVGSTHAPVVCSNGMQIVPH 60 MPTVA+LVFPG QALDVSGPLDVF+EANRFL +Q Y L+V+GSTH + CSNG+ I H Sbjct: 1 MPTVAILVFPGAQALDVSGPLDVFSEANRFLGHEQRYQLTVIGSTHGLMQCSNGLPIAAH 60 Query: 61 LHYSAARENYDLLLAAGGPGLPQQERDALLSDWLAEAAQRAGRHGSICNGAFLLAHAGLL 120 HYS +DL+L AGGP LPQQ RD L WL A R+G++GSICNGAFLLAHAGLL Sbjct: 61 KHYSEVDTGFDLILVAGGPELPQQARDEALLGWLHSCALRSGKYGSICNGAFLLAHAGLL 120 Query: 121 NGKRVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLSLALLAEDAGQE 180 NGK +TTHWNDAA LAR FP VDADRI+L+DG L TSAGVTAGIDLSL LL++++G E Sbjct: 121 NGKTITTHWNDAALLARMFPATTVDADRIFLQDGNLYTSAGVTAGIDLSLYLLSQESGAE 180 Query: 181 VALNVAKRLVVFMQRSGGQSQFSPYLTPYAEETSLVGQVQHYVREHLQEKLSVDVLAKVV 240 V+LNVAKRLVVFMQR GGQSQFSPYLTPYAEE+S V VQ YV +LQ++LSV++LA+ V Sbjct: 181 VSLNVAKRLVVFMQRRGGQSQFSPYLTPYAEESSPVSMVQQYVLANLQQELSVEILARTV 240 Query: 241 SSSPRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYRCGFRDASHMRVV 300 + SPRNFAR+F RD ++TPAEFIE AR+DAAR +LE+S P+K +AY CGF +A+ MR V Sbjct: 241 AMSPRNFARIFVRDTKITPAEFIESARLDAARALLEASNDPMKKIAYLCGFHNANQMRNV 300 Query: 301 FQRRLGISAQQYRDNFSA 318 F +RLGI+A QYR NF+A Sbjct: 301 FVKRLGITAMQYRANFAA 318 >ref|YP_351127.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gb|ABA77136.1| araC family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 321 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 207/316 (65%), Positives = 245/316 (77%) Query: 3 TVALLVFPGVQALDVSGPLDVFAEANRFLLPQQHYHLSVVGSTHAPVVCSNGMQIVPHLH 62 TVA++VFPGVQALDVSGP+DVFAEANRFL P+ HY L V+G P+ CSNG+ + H H Sbjct: 4 TVAIVVFPGVQALDVSGPMDVFAEANRFLAPEDHYRLDVIGVERGPMACSNGLTLSAHRH 63 Query: 63 YSAARENYDLLLAAGGPGLPQQERDALLSDWLAEAAQRAGRHGSICNGAFLLAHAGLLNG 122 +S ++ YDLLL AGGP LP + WL EA RA R GSICNGAF+LA AGLL+G Sbjct: 64 FSDVQDAYDLLLVAGGPQLPFLDFGEAFDVWLREACGRARRFGSICNGAFMLARAGLLDG 123 Query: 123 KRVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLSLALLAEDAGQEVA 182 + VTTHWNDA ALA+ P V+ADR+Y+ DG+L TSAGVTAGIDLSL LLA D G EVA Sbjct: 124 RTVTTHWNDAEALAQLCPSSRVEADRLYVEDGQLYTSAGVTAGIDLSLYLLARDHGAEVA 183 Query: 183 LNVAKRLVVFMQRSGGQSQFSPYLTPYAEETSLVGQVQHYVREHLQEKLSVDVLAKVVSS 242 L+VAKRLVVF QRSGGQSQFSP+LTP+AE TS V VQ YV +L L++ LA + Sbjct: 184 LSVAKRLVVFTQRSGGQSQFSPFLTPHAEPTSAVAMVQLYVLANLTGDLTIADLANAANM 243 Query: 243 SPRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYRCGFRDASHMRVVFQ 302 S RNF+RVFAR+A++TPAEF+E ARVDAARVMLES+ APLKTVAY+CGFRDA HMR VF Sbjct: 244 SARNFSRVFAREAKVTPAEFVERARVDAARVMLESTTAPLKTVAYQCGFRDAQHMRSVFN 303 Query: 303 RRLGISAQQYRDNFSA 318 RRLG++ QQ+R NF+A Sbjct: 304 RRLGVTPQQFRLNFAA 319 >ref|YP_002875328.1| putative regulatory protein [Pseudomonas fluorescens SBW25] emb|CAY53271.1| putatuve regulatory protein [Pseudomonas fluorescens SBW25] Length = 321 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/316 (65%), Positives = 245/316 (77%) Query: 3 TVALLVFPGVQALDVSGPLDVFAEANRFLLPQQHYHLSVVGSTHAPVVCSNGMQIVPHLH 62 TVA+L+FPGVQ+LDV+GP+DVF EANRFL P+ HY L V+G + SNG+ + H H Sbjct: 4 TVAILIFPGVQSLDVTGPMDVFCEANRFLAPEDHYQLEVIGLGRGTMAASNGLSLQAHRH 63 Query: 63 YSAARENYDLLLAAGGPGLPQQERDALLSDWLAEAAQRAGRHGSICNGAFLLAHAGLLNG 122 YS A YDLLL AGGP LP ++ DWL A RA R GSICNGAF+LA AGLL+G Sbjct: 64 YSEALHAYDLLLVAGGPQLPFEDFGTQFDDWLRGATARAQRFGSICNGAFMLARAGLLDG 123 Query: 123 KRVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLSLALLAEDAGQEVA 182 K VTTHWNDAA LAR P +V+ADR+Y++DG L TSAGVTAGIDLSL LLA+D G EVA Sbjct: 124 KTVTTHWNDAADLARLCPTAQVEADRLYVQDGNLYTSAGVTAGIDLSLYLLAQDHGPEVA 183 Query: 183 LNVAKRLVVFMQRSGGQSQFSPYLTPYAEETSLVGQVQHYVREHLQEKLSVDVLAKVVSS 242 L+VAKRLVVF QRSGGQSQFSP+LT +AE TS V QVQ +V +L L++ LAK + Sbjct: 184 LSVAKRLVVFTQRSGGQSQFSPFLTAHAETTSAVAQVQLHVLANLTGDLTIADLAKAANM 243 Query: 243 SPRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYRCGFRDASHMRVVFQ 302 S RNF+RVFAR+AR+TPAEF+E ARVDAARVMLESS APLKTVAY+CGFRDA HMR VF Sbjct: 244 SARNFSRVFAREARITPAEFVERARVDAARVMLESSPAPLKTVAYQCGFRDAQHMRSVFN 303 Query: 303 RRLGISAQQYRDNFSA 318 RRLG++ QQ+R NF+A Sbjct: 304 RRLGVTPQQFRLNFAA 319 >ref|ZP_07778189.1| transcriptional regulator, AraC family [Pseudomonas fluorescens WH6] gb|EFQ60363.1| transcriptional regulator, AraC family [Pseudomonas fluorescens WH6] Length = 333 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/315 (66%), Positives = 246/315 (78%) Query: 4 VALLVFPGVQALDVSGPLDVFAEANRFLLPQQHYHLSVVGSTHAPVVCSNGMQIVPHLHY 63 VA+L+FPGVQ+LDV+GP+DVF EANRFL PQ HY L V+G H + SNG+ + H HY Sbjct: 17 VAILIFPGVQSLDVTGPMDVFCEANRFLAPQDHYQLEVIGFGHGSMAASNGLSLQAHRHY 76 Query: 64 SAARENYDLLLAAGGPGLPQQERDALLSDWLAEAAQRAGRHGSICNGAFLLAHAGLLNGK 123 S A + YDLLL AGGP LP ++ A DWL AA RA R GSICNGAF LA AGLL+GK Sbjct: 77 SEALQAYDLLLVAGGPQLPFEDFGAQFDDWLRGAAARARRFGSICNGAFTLARAGLLDGK 136 Query: 124 RVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLSLALLAEDAGQEVAL 183 VTTHWNDA LAR P +VDADR+Y++DG L TSAGVTAGIDLSL LLA+D G EVAL Sbjct: 137 TVTTHWNDAPGLARLCPSAQVDADRLYIQDGNLYTSAGVTAGIDLSLYLLAQDHGPEVAL 196 Query: 184 NVAKRLVVFMQRSGGQSQFSPYLTPYAEETSLVGQVQHYVREHLQEKLSVDVLAKVVSSS 243 +VAKRLVVF QRSGGQSQFSP+L+P+AE TS V +VQ YV +L L++ LAK + S Sbjct: 197 SVAKRLVVFTQRSGGQSQFSPFLSPHAETTSAVARVQLYVLANLTGDLTIGDLAKAANMS 256 Query: 244 PRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYRCGFRDASHMRVVFQR 303 RNF+RVFAR+AR+TPAEF+E ARVDAARVMLES APLKTVAY+CGFRDA HMR VF R Sbjct: 257 ARNFSRVFAREARITPAEFVERARVDAARVMLESPHAPLKTVAYQCGFRDAQHMRSVFNR 316 Query: 304 RLGISAQQYRDNFSA 318 RLG++ QQ+R NF+A Sbjct: 317 RLGVTPQQFRLNFAA 331 >gb|EGP46004.1| transcriptional regulator [Achromobacter xylosoxidans AXX-A] Length = 318 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/317 (64%), Positives = 244/317 (76%), Gaps = 2/317 (0%) Query: 1 MPTVALLVFPGVQALDVSGPLDVFAEANRFLLPQQHYHLSVVGSTHAPVVCSNGMQIVPH 60 M +VA+LVFPGVQ+LDVSGPLDVFAEANRFLLP + Y + ++G T V CSNGM + P Sbjct: 1 MKSVAILVFPGVQSLDVSGPLDVFAEANRFLLPARQYRMELIGLTRGAVPCSNGMLLTPQ 60 Query: 61 LHYSAARENYDLLLAAGGPGLP-QQERDALLSDWLAEAAQRAGRHGSICNGAFLLAHAGL 119 HY+ + DLLLAAGGPGLP +E D L+ WL A RA R+GSICNG FLLA AGL Sbjct: 61 RHYAEVADVPDLLLAAGGPGLPAARESDDALA-WLRAACARAERYGSICNGVFLLARAGL 119 Query: 120 LNGKRVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLSLALLAEDAGQ 179 G VTTHWNDA ALA +P++ V+ DR+Y +DG+L TSAGVTAGIDL+L L+A+D G Sbjct: 120 PAGATVTTHWNDAPALAARYPDLRVETDRLYAQDGRLHTSAGVTAGIDLALYLVAQDHGP 179 Query: 180 EVALNVAKRLVVFMQRSGGQSQFSPYLTPYAEETSLVGQVQHYVREHLQEKLSVDVLAKV 239 EVALNVAKRLVVFMQR+GGQSQFSP+LTP+ EETS V QVQ YV HL + L VD LA V Sbjct: 180 EVALNVAKRLVVFMQRAGGQSQFSPFLTPFVEETSAVAQVQQYVLGHLADDLGVDALAAV 239 Query: 240 VSSSPRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYRCGFRDASHMRV 299 + S RNF+RVF RDA +TPA+F+E RVDAAR LE ++APLKTVA+ CGFRDA H+R Sbjct: 240 ANMSRRNFSRVFLRDAGVTPADFVESVRVDAARARLERASAPLKTVAFDCGFRDARHLRE 299 Query: 300 VFQRRLGISAQQYRDNF 316 VFQRRLG+S QYR +F Sbjct: 300 VFQRRLGVSPSQYRASF 316