BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0166.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754840.1| glycine cleavage system transcriptional acti... 420 e-115 ref|YP_003778143.1| transcription regulator protein [Herbaspiril... 372 e-101 gb|EGC98708.1| DNA-binding transcriptional activator GcvA [Burkh... 297 1e-78 ref|YP_001120812.1| DNA-binding transcriptional activator GcvA [... 296 2e-78 ref|YP_622149.1| DNA-binding transcriptional activator GcvA [Bur... 295 5e-78 >ref|YP_004754840.1| glycine cleavage system transcriptional activator GcvA [Collimonas fungivorans Ter331] gb|AEK64017.1| Glycine cleavage system transcriptional activator GcvA [Collimonas fungivorans Ter331] Length = 308 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 200/305 (65%), Positives = 246/305 (80%), Gaps = 1/305 (0%) Query: 1 MADFRKLPNLAALRAFEAAARHDSFSRAAEEIHVTPGAISHQIRALEEELGLPLFTRNGK 60 MAD RKLPNL+ALRAFEAAAR+DSFSRAAEEI VTPGAISHQIRALE+ELG+ LF+R+GK Sbjct: 1 MADLRKLPNLSALRAFEAAARNDSFSRAAEEIFVTPGAISHQIRALEQELGIMLFSRHGK 60 Query: 61 RIAITEAGLRFAATIRNALTEIAAAAEMLQEQGGRQRLVVSSPPSFASRWLAPRLWKFID 120 RI ITE G RFAA IR +L EIA AAE L+ ++RL +S+ PSFA+RWLAPRLWKFID Sbjct: 61 RITITEQGQRFAAVIRKSLNEIAFAAEALKMDAKQKRLTISALPSFAARWLAPRLWKFID 120 Query: 121 RYPDIEVILQSSSHLNDLARDGIDVGVRFGLGNYPGLKAELIMEDFYYPVASPHYRQGRL 180 +PD EV+LQSS+HLNDL R+ IDVG+R+GLG+YPGL E +M+DFYYPVASP+YR G+L Sbjct: 121 LHPDTEVVLQSSNHLNDLEREPIDVGLRYGLGHYPGLVVEKLMDDFYYPVASPNYRGGKL 180 Query: 181 PSSPQQLRDCVLLRMDGLQESWLPWFKLAGLDLQDPAGGLVTQDSSLTLRAAAEGAGVAL 240 P +PQ+L C LLRMD + SWLPWF+ AG+DL +P GGL+ +D+S+ LR+A++G G+AL Sbjct: 181 PKTPQELEQCSLLRMDT-ESSWLPWFEAAGIDLVEPTGGLLIEDASMLLRSASDGLGIAL 239 Query: 241 TRHAIASQEIAAGELVRLFDIAWKSERAYYFVCHAETLGKPQVGHFRTWLQEEIALFKSN 300 TRHAIA QEIA+GELVRLFD+ + +YYF C E + KPQV F WL +E+ FK+ Sbjct: 240 TRHAIALQEIASGELVRLFDVVARCPLSYYFACTKEAMSKPQVQAFHRWLLDEVRTFKAQ 299 Query: 301 ERWPG 305 WPG Sbjct: 300 SEWPG 304 >ref|YP_003778143.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66235.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/307 (64%), Positives = 241/307 (78%), Gaps = 3/307 (0%) Query: 1 MADFRKLPNLAALRAFEAAARHDSFSRAAEEIHVTPGAISHQIRALEEELGLPLFTRNGK 60 MAD RKLPNLAALRAF+AAAR++ FSRAAEE+HVTPGAISHQ+RALEE+LGL LF R+GK Sbjct: 1 MADLRKLPNLAALRAFDAAARYECFSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGK 60 Query: 61 RIAITEAGLRFAATIRNALTEIAAAAEMLQEQGGRQRLVVSSPPSFASRWLAPRLWKFID 120 RI+ITE G RFAATIR +L+EIA AAE L+ Q +QRLV+S+ PSFASRWLAPRLW+FID Sbjct: 61 RISITETGQRFAATIRKSLSEIALAAEHLRSQNRQQRLVISTTPSFASRWLAPRLWRFID 120 Query: 121 RYPDIEVILQSSSHLNDLARDGIDVGVRFGLGNYPGLKAELIMEDFYYPVASPHYRQGRL 180 +P++EV+LQS++HLNDL DGIDVG+RFG GNY GL +E + +D+YYPVA+P YR R Sbjct: 121 AHPELEVVLQSAAHLNDLRLDGIDVGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRS 180 Query: 181 P--SSPQQLRDCVLLRMDGLQESWLPWFKLAGLDLQDPAGGLVTQDSSLTLRAAAEGAGV 238 + P L C LLR+D +ESW PW AGL+L +P GGL+ +DSSLTLR AAEG GV Sbjct: 181 KKLARPADLAHCSLLRVDS-RESWQPWLAEAGLELPEPTGGLLVEDSSLTLRQAAEGKGV 239 Query: 239 ALTRHAIASQEIAAGELVRLFDIAWKSERAYYFVCHAETLGKPQVGHFRTWLQEEIALFK 298 AL RH IASQEI+ GELVRLFD+ SE A+YFV E L KP V F+ W+ EE+ LF Sbjct: 240 ALARHVIASQEISTGELVRLFDVVVPSEDAHYFVHLPEALEKPGVAAFKEWIFEEMRLFH 299 Query: 299 SNERWPG 305 ++ WPG Sbjct: 300 ASAAWPG 306 >gb|EGC98708.1| DNA-binding transcriptional activator GcvA [Burkholderia sp. TJI49] Length = 314 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 149/297 (50%), Positives = 205/297 (69%), Gaps = 3/297 (1%) Query: 3 DFRKLPNLAALRAFEAAARHDSFSRAAEEIHVTPGAISHQIRALEEELGLPLFTRNGKRI 62 D R+LP L A+RAFEAA+RH++FSRAA+E+ VT GA+SHQ+RALEEELG+ LFTRNGKR+ Sbjct: 2 DLRQLPALNAIRAFEAASRHENFSRAADELFVTHGAVSHQVRALEEELGVQLFTRNGKRL 61 Query: 63 AITEAGLRFAATIRNALTEIAAAAEMLQEQGGRQRLVVSSPPSFASRWLAPRLWKFIDRY 122 +T+AG+R+A +R AL +A A ++ +RLV+S SFA+R++ PR+ FI+R+ Sbjct: 62 CLTDAGMRYAQQVRTALMMLADATRQVRASDRDRRLVISMLSSFAARFVTPRIGTFIERH 121 Query: 123 PDIEVILQSSSHLNDLARDGIDVGVRFGLGNYPGLKAELIMEDFYYPVASPHYRQGRLPS 182 P+I++ LQS++ L D ARD +D+ +RFG G+YPGL E + E+ ++P +P G+LP Sbjct: 122 PEIDIELQSTNSLTDFARDDVDLAIRFGFGSYPGLYVEPLFEEVFFPACAPTLNGGKLPQ 181 Query: 183 SPQQLRDCVLLRMDGLQESWLPWFKLAGLD-LQDPAGGLVTQDSSLTLRAAAEGAGVALT 241 +P L LLR D E W PWF AGLD L +P G++ QDSS L+AA +G G+AL Sbjct: 182 TPADLVHYNLLRSD--DELWRPWFDAAGLDTLTEPKRGILYQDSSNLLQAAIDGQGIALV 239 Query: 242 RHAIASQEIAAGELVRLFDIAWKSERAYYFVCHAETLGKPQVGHFRTWLQEEIALFK 298 R ++A E+ G LVRLFDI S YYFVC L P+V FRTW+ +E+A FK Sbjct: 240 RRSLALHEVLQGRLVRLFDIDGPSPWHYYFVCPTPLLSAPRVQAFRTWILQEVAAFK 296 >ref|YP_001120812.1| DNA-binding transcriptional activator GcvA [Burkholderia vietnamiensis G4] gb|ABO55977.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 323 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 152/297 (51%), Positives = 206/297 (69%), Gaps = 3/297 (1%) Query: 3 DFRKLPNLAALRAFEAAARHDSFSRAAEEIHVTPGAISHQIRALEEELGLPLFTRNGKRI 62 D R+LP L A+RAFEAAARH++FSRAA+E++VT GA+SHQ+RALE+ELG+ LFTRNGKR+ Sbjct: 2 DLRQLPALNAIRAFEAAARHENFSRAADELYVTHGAVSHQVRALEDELGVQLFTRNGKRL 61 Query: 63 AITEAGLRFAATIRNALTEIAAAAEMLQEQGGRQRLVVSSPPSFASRWLAPRLWKFIDRY 122 +T+AG+R+A +R AL IA A ++ +RLVVS SFA+R++ PR+ FI+R+ Sbjct: 62 CLTDAGMRYAQQVRAALMVIADATRDVRASDRGRRLVVSMLSSFAARFITPRIGTFIERH 121 Query: 123 PDIEVILQSSSHLNDLARDGIDVGVRFGLGNYPGLKAELIMEDFYYPVASPHYRQGRLPS 182 P+I+V LQS++ L D ARD +D+ +RFG GNYPGL E + E+ ++P SP G+LP Sbjct: 122 PEIDVELQSTNSLTDFARDDVDLAIRFGSGNYPGLHVEPLFEEVFFPACSPTLNGGKLPQ 181 Query: 183 SPQQLRDCVLLRMDGLQESWLPWFKLAGLD-LQDPAGGLVTQDSSLTLRAAAEGAGVALT 241 +P L LLR D E W PWF AGLD L +P G++ QDSS L AA EG G+AL Sbjct: 182 TPADLAHYRLLRSD--DELWRPWFNAAGLDTLTEPKRGILYQDSSNLLLAAIEGQGIALV 239 Query: 242 RHAIASQEIAAGELVRLFDIAWKSERAYYFVCHAETLGKPQVGHFRTWLQEEIALFK 298 R ++A ++ AG LVRLFDIA S Y+FVC + P+V FR WL +E+A ++ Sbjct: 240 RRSLAVDDLLAGRLVRLFDIAGPSPWHYFFVCPPPLIATPRVQAFRAWLLQEVAEYR 296 >ref|YP_622149.1| DNA-binding transcriptional activator GcvA [Burkholderia cenocepacia AU 1054] ref|YP_836531.1| DNA-binding transcriptional activator GcvA [Burkholderia cenocepacia HI2424] ref|YP_001766181.1| DNA-binding transcriptional activator GcvA [Burkholderia cenocepacia MC0-3] ref|YP_002229865.1| DNA-binding transcriptional activator GcvA [Burkholderia cenocepacia J2315] gb|ABF77176.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gb|ABK09638.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gb|ACA92059.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] emb|CAR51016.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 329 Score = 295 bits (756), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 153/297 (51%), Positives = 204/297 (68%), Gaps = 3/297 (1%) Query: 3 DFRKLPNLAALRAFEAAARHDSFSRAAEEIHVTPGAISHQIRALEEELGLPLFTRNGKRI 62 D R+LP L A+RAFEAAARH++FSRAA+E+ VT GA+SHQ+RALEEELG+ LFTRNGKR+ Sbjct: 2 DLRQLPALNAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEEELGVQLFTRNGKRL 61 Query: 63 AITEAGLRFAATIRNALTEIAAAAEMLQEQGGRQRLVVSSPPSFASRWLAPRLWKFIDRY 122 +T+AG+R+A IR AL IA A ++ +RLVVS SFA+R++ PR+ FI+R+ Sbjct: 62 CLTDAGMRYAQQIRTALMVIADATRDVRASDRDRRLVVSMLSSFAARFITPRIGTFIERH 121 Query: 123 PDIEVILQSSSHLNDLARDGIDVGVRFGLGNYPGLKAELIMEDFYYPVASPHYRQGRLPS 182 P+I+V LQS++ L D ARD +D+ +RFG G+YPGL E + E+ ++P +P G+LP Sbjct: 122 PEIDVELQSTNSLTDFARDDVDLAIRFGFGSYPGLHVEPLFEEVFFPACAPTLNGGKLPQ 181 Query: 183 SPQQLRDCVLLRMDGLQESWLPWFKLAGLD-LQDPAGGLVTQDSSLTLRAAAEGAGVALT 241 +P L LLR D E W PWF AGLD L +P G++ QDSS L AA EG G+AL Sbjct: 182 TPADLVHYPLLRSD--DELWRPWFDAAGLDTLTEPKRGILYQDSSNLLLAAIEGQGIALV 239 Query: 242 RHAIASQEIAAGELVRLFDIAWKSERAYYFVCHAETLGKPQVGHFRTWLQEEIALFK 298 R ++A ++ G +VRLFDI S Y+FVC L P+V FRTWL EE+A +K Sbjct: 240 RRSLAVHDLLDGRIVRLFDIDGPSPWHYFFVCPPPLLNTPRVQAFRTWLFEEVAEYK 296