BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0155.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003226418.1| LysR family transcriptional regulator [Zymom... 246 4e-63 ref|ZP_02187565.1| regulatory protein, LysR:LysR, substrate-bind... 245 5e-63 ref|YP_004501732.1| LysR family transcriptional regulator [Serra... 233 2e-59 ref|ZP_06190955.1| transcriptional regulatory protein [Serratia ... 231 1e-58 ref|YP_003019116.1| LysR family transcriptional regulator [Pecto... 227 2e-57 >ref|YP_003226418.1| LysR family transcriptional regulator [Zymomonas mobilis subsp. mobilis NCIMB 11163] gb|ACV75834.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 331 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 125/187 (66%), Positives = 142/187 (75%), Gaps = 13/187 (6%) Query: 1 MDSLNSLNAFVQAAEARSFTAAGHQLGVSSSAVGKSIARLEERLGVRLFHRSTRSVTLTP 60 MDSL SLNAFV AAEARSFT AG QLGVSSSA+GK+IARLE RLGVRLFHRSTR++TLTP Sbjct: 1 MDSLGSLNAFVHAAEARSFTTAGKQLGVSSSAIGKAIARLEGRLGVRLFHRSTRTITLTP 60 Query: 61 EGAAFLERCRRIFAEVEAAEQEFAHSLGAPRGKLRVSMPIVGMLMMPALSAFXIVGMLMM 120 EG FLERCRRIF+EVEAAE E + + GAP GKLR+S+P+VGMLMMP +SAF Sbjct: 61 EGGLFLERCRRIFSEVEAAELEISQTRGAPHGKLRISLPLVGMLMMPTISAFM------- 113 Query: 121 PALRAARAHPEIELELDFTDRLVDVIAEGFDAVVRSGEAVDSRLVARPLGKFRFRLAASP 180 R P IEL+LDFTDRLVDVI EGFDAV+R+GE DSRL+ R LG F ++L S Sbjct: 114 ------RLWPNIELDLDFTDRLVDVIDEGFDAVIRTGEINDSRLMTRMLGSFNYQLVGSA 167 Query: 181 AYLKRAG 187 Y G Sbjct: 168 DYFAEHG 174 >ref|ZP_02187565.1| regulatory protein, LysR:LysR, substrate-binding [alpha proteobacterium BAL199] gb|EDP65907.1| regulatory protein, LysR:LysR, substrate-binding [alpha proteobacterium BAL199] Length = 305 Score = 245 bits (626), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 132/222 (59%), Positives = 158/222 (71%), Gaps = 24/222 (10%) Query: 1 MDSLNSLNAFVQAAEARSFTAAGHQLGVSSSAVGKSIARLEERLGVRLFHRSTRSVTLTP 60 MDSL LNAFVQAA+ARSFTAAG QLGVSSSA+GK++ARLEERLGVRLFHRSTR++ LTP Sbjct: 1 MDSLGPLNAFVQAADARSFTAAGRQLGVSSSAIGKAVARLEERLGVRLFHRSTRAIALTP 60 Query: 61 EGAAFLERCRRIFAEVEAAEQEFAHSLGAPRGKLRVSMPIVGMLMMPALSAFXIVGMLMM 120 EGA FL RCRRI +E E AE E A + GAPRG+L VS+P+ G+LMMPA+SAF Sbjct: 61 EGALFLRRCRRILSEAEDAELEIAQTQGAPRGRLNVSLPLAGILMMPAISAFM------- 113 Query: 121 PALRAARAHPEIELELDFTDRLVDVIAEGFDAVVRSGEAVDSRLVARPLGKFRFRLAASP 180 A+PEIELELDF+DRLVDVI EGFDAV+R+GE DSRL++R LG F+ RL SP Sbjct: 114 ------HAYPEIELELDFSDRLVDVIDEGFDAVIRAGEIGDSRLMSRTLGTFQLRLVGSP 167 Query: 181 AYLKRAGX-------AAHA----RRSAAARLPASPLRHQRQA 211 Y G HA R + + +L PL+H+ +A Sbjct: 168 VYFASKGYPQNPDDLKQHACLQHRYATSGKLERWPLQHKGEA 209 >ref|YP_004501732.1| LysR family transcriptional regulator [Serratia sp. AS12] ref|YP_004506684.1| LysR family transcriptional regulator [Serratia sp. AS9] gb|AEF46423.1| transcriptional regulator, LysR family [Serratia sp. AS9] gb|AEF51375.1| transcriptional regulator, LysR family [Serratia sp. AS12] gb|AEG29083.1| transcriptional regulator, LysR family [Serratia sp. AS13] Length = 299 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 122/187 (65%), Positives = 142/187 (75%), Gaps = 13/187 (6%) Query: 1 MDSLNSLNAFVQAAEARSFTAAGHQLGVSSSAVGKSIARLEERLGVRLFHRSTRSVTLTP 60 MDSL+ + AFVQ AE RSF+ AG QLGVSSSAVGKS+AR+EERL VRLFHRSTRSVTLT Sbjct: 1 MDSLSGILAFVQVAETRSFSDAGRQLGVSSSAVGKSVARMEERLEVRLFHRSTRSVTLTA 60 Query: 61 EGAAFLERCRRIFAEVEAAEQEFAHSLGAPRGKLRVSMPIVGMLMMPALSAFXIVGMLMM 120 EGA FLERCRRI AE+ AAE E A + APRGKLR+S+P+V LMMP L+AF Sbjct: 61 EGALFLERCRRILAEIAAAELELADTRAAPRGKLRISLPLVSGLMMPVLTAFM------- 113 Query: 121 PALRAARAHPEIELELDFTDRLVDVIAEGFDAVVRSGEAVDSRLVARPLGKFRFRLAASP 180 +P+IEL++DF+DRLVD++ EGFDAVVR+GE VDSRLV+R LG F L ASP Sbjct: 114 ------HQYPDIELDVDFSDRLVDIVEEGFDAVVRTGEPVDSRLVSRRLGVFELVLVASP 167 Query: 181 AYLKRAG 187 YLKR G Sbjct: 168 DYLKRRG 174 >ref|ZP_06190955.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gb|EFA16461.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 299 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 121/187 (64%), Positives = 141/187 (75%), Gaps = 13/187 (6%) Query: 1 MDSLNSLNAFVQAAEARSFTAAGHQLGVSSSAVGKSIARLEERLGVRLFHRSTRSVTLTP 60 MDSL+ + AFVQ AE RSF+ AG QLGVSSSAVGKS+AR+EERL VRLFHRSTRSVTLT Sbjct: 1 MDSLSGILAFVQVAETRSFSDAGRQLGVSSSAVGKSVARMEERLEVRLFHRSTRSVTLTA 60 Query: 61 EGAAFLERCRRIFAEVEAAEQEFAHSLGAPRGKLRVSMPIVGMLMMPALSAFXIVGMLMM 120 EGA FLERCRRI AE+ AAE E A + APRGKLR+S+P+V LMMP L+AF Sbjct: 61 EGALFLERCRRILAEIAAAELELADTRAAPRGKLRISLPLVSGLMMPVLTAFM------- 113 Query: 121 PALRAARAHPEIELELDFTDRLVDVIAEGFDAVVRSGEAVDSRLVARPLGKFRFRLAASP 180 +P+IEL++DF+DRLVD++ EGFDAVVR+GE DSRLV+R LG F L ASP Sbjct: 114 ------HRYPDIELDVDFSDRLVDIVEEGFDAVVRTGEPADSRLVSRRLGVFELVLVASP 167 Query: 181 AYLKRAG 187 YLKR G Sbjct: 168 DYLKRRG 174 >ref|YP_003019116.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum PC1] gb|ACT14580.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 298 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 117/187 (62%), Positives = 137/187 (73%), Gaps = 13/187 (6%) Query: 1 MDSLNSLNAFVQAAEARSFTAAGHQLGVSSSAVGKSIARLEERLGVRLFHRSTRSVTLTP 60 MDSLN FVQ AE RSF AAG LGVS+SAVGKS+ARLEE+LGVRLFHRSTRS+TLT Sbjct: 1 MDSLNGFMVFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSITLTA 60 Query: 61 EGAAFLERCRRIFAEVEAAEQEFAHSLGAPRGKLRVSMPIVGMLMMPALSAFXIVGMLMM 120 EG+ FL R RRI AE+EAAE E + + PRG+LRVS+P+V L++P L F Sbjct: 61 EGSLFLARSRRILAEIEAAELELSQTKAVPRGRLRVSLPLVSSLVLPVLGEFM------- 113 Query: 121 PALRAARAHPEIELELDFTDRLVDVIAEGFDAVVRSGEAVDSRLVARPLGKFRFRLAASP 180 R +PEIEL+LDFTDR+VDVI EGFDAVVR+G+ VDSRL AR LG FRF + A+P Sbjct: 114 ------REYPEIELDLDFTDRMVDVIEEGFDAVVRTGDPVDSRLTARRLGTFRFLVVAAP 167 Query: 181 AYLKRAG 187 YL R G Sbjct: 168 DYLARYG 174