BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0137.p         (139 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001667744.1| cupin 2 domain-containing protein [Pseudomon...   137   6e-31
ref|YP_607295.1| hypothetical protein PSEEN1633 [Pseudomonas ent...   135   2e-30
ref|YP_586450.1| Cupin 2 barrel domain-containing protein [Cupri...   133   7e-30
ref|YP_001269096.1| cupin 2 domain-containing protein [Pseudomon...   133   1e-29
ref|YP_004701014.1| cupin 2 domain-containing protein [Pseudomon...   129   1e-28

>ref|YP_001667744.1| cupin 2 domain-containing protein [Pseudomonas putida GB-1]
 gb|ABY97408.1| Cupin 2 conserved barrel domain protein [Pseudomonas putida GB-1]
          Length = 133

 Score =  137 bits (345), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 90/127 (70%), Gaps = 2/127 (1%)

Query: 11  LLIVLLAMVASAGAHDGKHGDEVVTPLQHQALSDAPGKSGVMAVVAYGPGQSSVAHRHPG 70
           +L  LLA    A AH G   D+V T LQ Q  S+APGK+ VM  V+Y PG++S AH+HPG
Sbjct: 7   ILFALLAAQTPAWAH-GDVADQV-TVLQQQQPSNAPGKTAVMLTVSYAPGEASPAHQHPG 64

Query: 71  SIFAYVLEGEVVSQLQGGAPVTYKAGESWYEAPDTPHLVSRNASATKPAKLLVWSLVQDG 130
           ++ AYVLEG VVS+L      TYKAG+ WYEAP T H VSRNAS T+PAKLLVWSLV +G
Sbjct: 65  AVMAYVLEGAVVSKLNNEQEKTYKAGQYWYEAPGTVHSVSRNASKTQPAKLLVWSLVDEG 124

Query: 131 KPLTVPL 137
           KP+T  L
Sbjct: 125 KPVTEAL 131


>ref|YP_607295.1| hypothetical protein PSEEN1633 [Pseudomonas entomophila L48]
 emb|CAK14489.1| conserved hypothetical protein; putative signal peptide
           [Pseudomonas entomophila L48]
          Length = 137

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 83/113 (73%), Gaps = 2/113 (1%)

Query: 29  HGD--EVVTPLQHQALSDAPGKSGVMAVVAYGPGQSSVAHRHPGSIFAYVLEGEVVSQLQ 86
           HGD  + V  LQ Q  ++APGK  VM  V+Y PGQ+S AH+HPG++ AYVLEG V S+L 
Sbjct: 25  HGDKPDQVKILQEQLPTNAPGKKAVMLTVSYAPGQASPAHQHPGAVMAYVLEGAVTSKLN 84

Query: 87  GGAPVTYKAGESWYEAPDTPHLVSRNASATKPAKLLVWSLVQDGKPLTVPLEK 139
             +  TYKAGE WYEAP T H VSRNAS T+PAKLLVWSLV +G+P+T PL +
Sbjct: 85  DESEKTYKAGEFWYEAPGTVHSVSRNASKTQPAKLLVWSLVDEGRPVTEPLSR 137


>ref|YP_586450.1| Cupin 2 barrel domain-containing protein [Cupriavidus metallidurans
           CH34]
 gb|ABF11181.1| Cupin 2, conserved barrel [Cupriavidus metallidurans CH34]
          Length = 146

 Score =  133 bits (335), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 68/130 (52%), Positives = 87/130 (66%), Gaps = 2/130 (1%)

Query: 9   SALLIVLLAMVASAGAHDGKHGDEVVTPLQHQALSDAPGKSGVMAVVAYGPGQSSVAHRH 68
           +A+L+  +A    A AH+  H  E  TP+  Q + +A G+   M  VAY PGQ+S  HRH
Sbjct: 17  AAMLLCTMAATRPALAHEAGH--ETTTPVMKQDIPEAKGRHVFMITVAYEPGQASEPHRH 74

Query: 69  PGSIFAYVLEGEVVSQLQGGAPVTYKAGESWYEAPDTPHLVSRNASATKPAKLLVWSLVQ 128
           PGSIFAYVL+GEV SQL G     YKAGE+WYE P   HLVSRNAS+TKPAKLLV+ + +
Sbjct: 75  PGSIFAYVLDGEVESQLDGQPARVYKAGEAWYEPPGAKHLVSRNASSTKPAKLLVYGIAE 134

Query: 129 DGKPLTVPLE 138
              P+ +PL+
Sbjct: 135 GNMPVKLPLD 144


>ref|YP_001269096.1| cupin 2 domain-containing protein [Pseudomonas putida F1]
 gb|ABQ79912.1| Cupin 2, conserved barrel domain protein [Pseudomonas putida F1]
 gb|ADR61286.1| Cupin 2 domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 133

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/126 (57%), Positives = 89/126 (70%), Gaps = 3/126 (2%)

Query: 11  LLIVLLAMVASAGAHDGKHGD--EVVTPLQHQALSDAPGKSGVMAVVAYGPGQSSVAHRH 68
           L I+L A++A A      HGD  + V  LQ Q  S+APGK+ VM  V+Y PG++S AH+H
Sbjct: 4   LAIILFALLA-AQTPAWAHGDVADQVRVLQQQQPSNAPGKTAVMLTVSYAPGEASPAHQH 62

Query: 69  PGSIFAYVLEGEVVSQLQGGAPVTYKAGESWYEAPDTPHLVSRNASATKPAKLLVWSLVQ 128
           PG++ AYVLEG VVS+L      TYKAG+ WYEAP T H VSRNAS T+PA LLVWSLV 
Sbjct: 63  PGAVMAYVLEGAVVSKLNSEQEKTYKAGDYWYEAPGTVHSVSRNASKTQPASLLVWSLVD 122

Query: 129 DGKPLT 134
           +GKP+T
Sbjct: 123 EGKPVT 128


>ref|YP_004701014.1| cupin 2 domain-containing protein [Pseudomonas putida S16]
 gb|AEJ12134.1| cupin 2 domain-containing protein [Pseudomonas putida S16]
          Length = 138

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/128 (56%), Positives = 86/128 (67%), Gaps = 2/128 (1%)

Query: 9   SALLIVLLAMVASAGAHDGKHGDEVVTPLQHQALSDAPGKSGVMAVVAYGPGQSSVAHRH 68
           S +L+ L      A AH G   D+V   LQ Q  S+APGKS VM  V+Y PGQ+S AH+H
Sbjct: 5   SIILLALFVAQTPAWAH-GDAADQVKV-LQQQQPSNAPGKSAVMLTVSYAPGQASPAHQH 62

Query: 69  PGSIFAYVLEGEVVSQLQGGAPVTYKAGESWYEAPDTPHLVSRNASATKPAKLLVWSLVQ 128
           PG++ AYVLEG VVS+L      TYKAGE WYEAP T H VSRNAS  + AKLLVWSLV 
Sbjct: 63  PGAVMAYVLEGAVVSKLDNEPEKTYKAGEYWYEAPGTVHSVSRNASQKQSAKLLVWSLVD 122

Query: 129 DGKPLTVP 136
           +G  +T+P
Sbjct: 123 EGSAVTLP 130