BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0135.p (482 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004354556.1| GntR family transcriptional regulator [Pseud... 593 e-167 ref|YP_002873060.1| GntR family regulatory protein [Pseudomonas ... 585 e-165 ref|ZP_07775793.1| regulatory protein GntR, HTH [Pseudomonas flu... 580 e-163 ref|YP_348931.1| GntR family transcriptional regulator [Pseudomo... 577 e-162 ref|YP_001267337.1| GntR family transcriptional regulator [Pseud... 546 e-153 >ref|YP_004354556.1| GntR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69552.1| putative Transcription factor, GntR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 477 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 287/480 (59%), Positives = 365/480 (76%), Gaps = 4/480 (0%) Query: 1 MELHIVIEGSKDLAGQVYRQLRDAIQSGRLAPGEQVPPSRLLAIQLGLSRKTVSEAYSRL 60 MELH+VI G KDL+GQ+Y+QLR AI+SGRLA G Q+PPSRLLA QLG+SRKTVS+ Y++L Sbjct: 1 MELHVVINGRKDLSGQLYQQLRSAIESGRLAAGTQLPPSRLLAEQLGVSRKTVSDTYAQL 60 Query: 61 TLDKLLVGRTGSGTFVNAPPEPKSKPKRFESGDLASGKLIAHWLDQSFPLLMRHVGPETR 120 T + LL G G GT+VNA P ++ +LA ++ W ++ P LMRH E Sbjct: 61 TYENLLTGIIGKGTYVNA--RPARIVRKQSHRELAGADVVEAW--RTMPDLMRHPTLEGA 116 Query: 121 SQYDFMGGIPVRRQFPQEEWRQCVLYGLRQISESCGFYAETEGLPALREAIARHVSFSRG 180 +YDF+GG + QFP ++WR+C + LRQI+ + GFY++ EGLP+LR AIARH++FSRG Sbjct: 117 LRYDFIGGATGKGQFPLDDWRRCTAHALRQIASAKGFYSQPEGLPSLRNAIARHIAFSRG 176 Query: 181 VQCTAADVLVTNGAQQALDLIARVLVEPGSVVAVEDPGYPPARMLFSAQGARVESVPVDS 240 V C DV+V NGAQQALDLI+RVL PGS+VA+EDPGYPPAR+LF +QGA V VPVD Sbjct: 177 VNCQDEDVVVCNGAQQALDLISRVLTRPGSLVAMEDPGYPPARLLFGSQGATVVGVPVDE 236 Query: 241 EGMRVDLIPDGTRLIYATPAHQFPLGMPMSPARRAALLARARELRAIVIEDDYDSEFRYE 300 +GMRVDLIPDGTRLIY TP+HQFPLGMPMS ARR ALLARA EL AI+IEDDYDSEFRYE Sbjct: 237 QGMRVDLIPDGTRLIYVTPSHQFPLGMPMSQARREALLARAYELGAIIIEDDYDSEFRYE 296 Query: 301 GRPMDSLQSMDQDGLVAFVGTFSKSMNPELRVGYVIAPPSILRAMTVVKGLSDWHTPTMT 360 GRP DSLQS+D+ G+VA+VGTFSK++ PELR+GY I PP+IL A+ + K L+D HT T+ Sbjct: 297 GRPADSLQSLDERGIVAYVGTFSKTLLPELRLGYAILPPAILEAVILAKRLTDQHTSTLP 356 Query: 361 QWAMARFIDEGYLQKHIRRCHGIYVARREKLHAALNGTLKPWMCAVPTTAGFHLAARMTA 420 QWA+A+FI EG L KHIRRCH +Y RRE++ A + G L PW AVPTTAGFH+A Sbjct: 357 QWALAKFIAEGCLLKHIRRCHALYAGRRERILARMGGDLSPWFEAVPTTAGFHMAVLCKV 416 Query: 421 EVDMTQLLRLARRVDVALYTLDEFYYRVKPEPALFFGYGAIESLDIETALGRVKTILEEL 480 +D+ ++ LA++ +V LY+LD F+ P LFFG+GAIE+LDI+ AL R++ IL+++ Sbjct: 417 PMDLALVIELAKKAEVGLYSLDGFFNEAPVRPGLFFGFGAIETLDIDIALDRLRDILQQV 476 >ref|YP_002873060.1| GntR family regulatory protein [Pseudomonas fluorescens SBW25] emb|CAY49717.1| GntR family regulatory protein [Pseudomonas fluorescens SBW25] Length = 477 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 292/481 (60%), Positives = 365/481 (75%), Gaps = 4/481 (0%) Query: 1 MELHIVIEGSKDLAGQVYRQLRDAIQSGRLAPGEQVPPSRLLAIQLGLSRKTVSEAYSRL 60 MELH+VI G KDLA Q+Y+QLR+AI SGRLA G Q+PPSRLLA QLG+SRKTVS+ Y+ L Sbjct: 1 MELHVVINGRKDLAEQLYQQLREAIGSGRLAAGAQLPPSRLLAEQLGVSRKTVSDTYATL 60 Query: 61 TLDKLLVGRTGSGTFVNAPPEPKSKPKRFESGDLASGKLIAHWLDQSFPLLMRHVGPETR 120 T + LLVG+TG GTFVNA P S+ + S DLA +A W QS P MRH ++ Sbjct: 61 TYEGLLVGKTGRGTFVNAR-APLSE-RLHTSTDLACTARLAKW--QSLPSPMRHPTRDST 116 Query: 121 SQYDFMGGIPVRRQFPQEEWRQCVLYGLRQISESCGFYAETEGLPALREAIARHVSFSRG 180 +Y+F+GG R QFPQ+EWR+C LR+I+++ GFY++ EGLPALR AIA H++FSRG Sbjct: 117 LRYEFIGGATSRNQFPQDEWRRCTQDALRRIAQNSGFYSQPEGLPALRSAIAGHIAFSRG 176 Query: 181 VQCTAADVLVTNGAQQALDLIARVLVEPGSVVAVEDPGYPPARMLFSAQGARVESVPVDS 240 V C +D++VTNGAQQALDLIARV++EPGS+VA+EDPGY PAR LF A GA V SVPVD+ Sbjct: 177 VNCRDSDIIVTNGAQQALDLIARVVLEPGSMVAMEDPGYSPARQLFVAMGANVASVPVDA 236 Query: 241 EGMRVDLIPDGTRLIYATPAHQFPLGMPMSPARRAALLARARELRAIVIEDDYDSEFRYE 300 EG++VD IPDGTRLIY TP+HQFPLGMPMS RR ALLARA EL AI+IEDDYDSEFRYE Sbjct: 237 EGIQVDRIPDGTRLIYVTPSHQFPLGMPMSMPRREALLARAFELGAIIIEDDYDSEFRYE 296 Query: 301 GRPMDSLQSMDQDGLVAFVGTFSKSMNPELRVGYVIAPPSILRAMTVVKGLSDWHTPTMT 360 GRP DSLQSMD G+V +VGTFSK++ PELR+GY + PP+I A+ K L+D H+ T+ Sbjct: 297 GRPTDSLQSMDTHGVVTYVGTFSKTLLPELRLGYAVLPPAIYGAVLKAKQLTDQHSSTLP 356 Query: 361 QWAMARFIDEGYLQKHIRRCHGIYVARREKLHAALNGTLKPWMCAVPTTAGFHLAARMTA 420 QWA+A+FI EGYL KHIRRCH +Y RRE++ L G L PW AVPT AGFH+AA Sbjct: 357 QWALAKFISEGYLLKHIRRCHTVYAGRRERILQRLAGDLSPWFEAVPTVAGFHMAALCKV 416 Query: 421 EVDMTQLLRLARRVDVALYTLDEFYYRVKPEPALFFGYGAIESLDIETALGRVKTILEEL 480 V++ L+ LARRV+V +Y L+ F++ P L G+GAIE+LDI+ AL +V+ IL+++ Sbjct: 417 PVNIPLLMELARRVEVGVYPLEVFFHDAPVRPGLIIGFGAIETLDIDPALDKVRDILQQI 476 Query: 481 G 481 G Sbjct: 477 G 477 >ref|ZP_07775793.1| regulatory protein GntR, HTH [Pseudomonas fluorescens WH6] gb|EFQ63522.1| regulatory protein GntR, HTH [Pseudomonas fluorescens WH6] Length = 477 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 288/482 (59%), Positives = 362/482 (75%), Gaps = 6/482 (1%) Query: 1 MELHIVIEGSKDLAGQVYRQLRDAIQSGRLAPGEQVPPSRLLAIQLGLSRKTVSEAYSRL 60 MELHIVI G KDLA Q+Y+QLR+AI +GRL G Q+PPSRLLA QLG+SRKTVS+ Y+ L Sbjct: 1 MELHIVITGRKDLAAQLYQQLREAIATGRLCAGAQLPPSRLLAEQLGISRKTVSDTYATL 60 Query: 61 TLDKLLVGRTGSGTFVNAPPEPKSKPKRFESG-DLASGKLIAHWLDQSFPLLMRHVGPET 119 T + LLVGR G GTFVNA +P R ++ DLA +A W + P MRH ++ Sbjct: 61 TYEGLLVGRIGRGTFVNAW---APQPDRLQTATDLACADNLAQW--AALPSPMRHPTRDS 115 Query: 120 RSQYDFMGGIPVRRQFPQEEWRQCVLYGLRQISESCGFYAETEGLPALREAIARHVSFSR 179 +Y+F+GG R QFPQ+EWR+C LR+I+++ GFY++ EGLPALR AIA H++FSR Sbjct: 116 ILRYEFIGGATSRHQFPQDEWRRCTQDALRRIAQNSGFYSQPEGLPALRSAIAGHIAFSR 175 Query: 180 GVQCTAADVLVTNGAQQALDLIARVLVEPGSVVAVEDPGYPPARMLFSAQGARVESVPVD 239 GV+C D++VTNGAQQALDL+ARV++EPGS+VA+EDPGY PAR LF A GA V SVPVD Sbjct: 176 GVKCRDNDIVVTNGAQQALDLLARVILEPGSIVAMEDPGYSPARQLFMAMGASVASVPVD 235 Query: 240 SEGMRVDLIPDGTRLIYATPAHQFPLGMPMSPARRAALLARARELRAIVIEDDYDSEFRY 299 +G++VD IP+GTRLIY TP+HQFPLGMPMSPARR ALLARA EL AI+IEDDYDSEFRY Sbjct: 236 DQGIQVDRIPEGTRLIYVTPSHQFPLGMPMSPARREALLARAFELGAIIIEDDYDSEFRY 295 Query: 300 EGRPMDSLQSMDQDGLVAFVGTFSKSMNPELRVGYVIAPPSILRAMTVVKGLSDWHTPTM 359 EGRP DSLQSMD G+V +VGTFSK++ PELR+GY++ PP+I A+ K L+D H+ T+ Sbjct: 296 EGRPTDSLQSMDTRGVVTYVGTFSKTLLPELRLGYLVLPPAIYPAVLKAKQLTDQHSSTL 355 Query: 360 TQWAMARFIDEGYLQKHIRRCHGIYVARREKLHAALNGTLKPWMCAVPTTAGFHLAARMT 419 QWA+A+FI EGYL KHIRRCH +Y RRE++ L G L PW AVPT AGFH+AA Sbjct: 356 PQWALAKFISEGYLLKHIRRCHTVYAGRRERILQRLAGDLSPWFEAVPTVAGFHMAALCK 415 Query: 420 AEVDMTQLLRLARRVDVALYTLDEFYYRVKPEPALFFGYGAIESLDIETALGRVKTILEE 479 VD+ L+ LAR+ DV LY LD F++ L G+GAIE+LDI+ AL +V+ IL++ Sbjct: 416 VPVDIALLMGLARQADVGLYPLDVFFHDAPVRQGLIIGFGAIETLDIDPALDKVRDILQQ 475 Query: 480 LG 481 +G Sbjct: 476 IG 477 >ref|YP_348931.1| GntR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gb|ABA74940.1| GntR family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 478 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 276/480 (57%), Positives = 360/480 (75%), Gaps = 4/480 (0%) Query: 1 MELHIVIEGSKDLAGQVYRQLRDAIQSGRLAPGEQVPPSRLLAIQLGLSRKTVSEAYSRL 60 MELH+VI G KDLAGQ+Y+QLR AI+SGRL G Q+PPSRLLA QLG+SRKT+S+ Y++L Sbjct: 1 MELHVVINGRKDLAGQLYQQLRGAIESGRLTAGTQLPPSRLLAEQLGISRKTISDTYAQL 60 Query: 61 TLDKLLVGRTGSGTFVNAPPEPKSKPKRFESGDLASGKLIAHWLDQSFPLLMRHVGPETR 120 T + L G G GT+VNA P + + +LAS ++I W ++ P+ +RH E Sbjct: 61 TYENFLTGVIGKGTYVNARSTPVQRKQ--SHSELASSEVIESW--RNLPVFLRHPTLEGS 116 Query: 121 SQYDFMGGIPVRRQFPQEEWRQCVLYGLRQISESCGFYAETEGLPALREAIARHVSFSRG 180 +YDF+GG + QFP ++WR+CV + LRQ++ S GFY+ EGLPALR AIARH++FSRG Sbjct: 117 LRYDFIGGATSKGQFPHDDWRRCVSHALRQMAHSKGFYSVPEGLPALRNAIARHIAFSRG 176 Query: 181 VQCTAADVLVTNGAQQALDLIARVLVEPGSVVAVEDPGYPPARMLFSAQGARVESVPVDS 240 V C D++V NGAQQALDLI RVL+ PGS+VA+EDPGYPPAR+LF GA V VPVD+ Sbjct: 177 VNCQDEDIVVCNGAQQALDLITRVLIRPGSLVAMEDPGYPPARLLFGTHGATVVGVPVDA 236 Query: 241 EGMRVDLIPDGTRLIYATPAHQFPLGMPMSPARRAALLARARELRAIVIEDDYDSEFRYE 300 EG++V+ IP+GTRLIY TP+HQFPLGMPMS ARR ALLARA EL AI+IEDDYDSEFRYE Sbjct: 237 EGIQVERIPEGTRLIYVTPSHQFPLGMPMSQARREALLARAHELGAIIIEDDYDSEFRYE 296 Query: 301 GRPMDSLQSMDQDGLVAFVGTFSKSMNPELRVGYVIAPPSILRAMTVVKGLSDWHTPTMT 360 GRP DSL +DQ G+VA+VGTFSK++ PELR+GY I PP+IL A+ K L+D H T+ Sbjct: 297 GRPTDSLHKLDQRGIVAYVGTFSKTLLPELRLGYAILPPAILEAVIRAKQLTDLHASTLP 356 Query: 361 QWAMARFIDEGYLQKHIRRCHGIYVARREKLHAALNGTLKPWMCAVPTTAGFHLAARMTA 420 QWA+A+FI EG L KHIRRCH IY RRE++ A + L PW+ AVP +AGFH+A Sbjct: 357 QWALAKFIAEGCLLKHIRRCHTIYAQRRERILARMATDLSPWLQAVPPSAGFHMAVFCKV 416 Query: 421 EVDMTQLLRLARRVDVALYTLDEFYYRVKPEPALFFGYGAIESLDIETALGRVKTILEEL 480 +D+ ++ LA++V+V LY +D FYY+ + ++FG+GAIE+LDI+ AL R++ IL+++ Sbjct: 417 PIDLPLVIELAKKVEVGLYAIDGFYYQQPAKNGMYFGFGAIETLDIDIALDRLRDILQQV 476 >ref|YP_001267337.1| GntR family transcriptional regulator [Pseudomonas putida F1] gb|ABQ78153.1| transcriptional regulator, GntR family [Pseudomonas putida F1] Length = 498 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 279/482 (57%), Positives = 344/482 (71%), Gaps = 8/482 (1%) Query: 1 MELHIVIEGSKDLAGQVYRQLRDAIQSGRLAPGEQVPPSRLLAIQLGLSRKTVSEAYSRL 60 MELHI +EG K LA Q+Y+QLRD I SG LA G Q+PP+RLLA QLG+SRKTV+EAYSRL Sbjct: 22 MELHIRLEGRKGLADQLYQQLRDGIDSGHLAAGTQLPPTRLLAEQLGVSRKTVAEAYSRL 81 Query: 61 TLDKLLVGRTGSGTFVNAPPEPKSKPKRFESGD--LASGKLIAHWLDQSFPLLMRHVGPE 118 T D LL G G GTFV P+ + ES LA + W ++ L R V + Sbjct: 82 TYDNLLSGVVGRGTFVT----PRHPLRSNESATIPLAGAASLERWQQRATVLSQRQV--Q 135 Query: 119 TRSQYDFMGGIPVRRQFPQEEWRQCVLYGLRQISESCGFYAETEGLPALREAIARHVSFS 178 S+YDF+GG + QFP ++WR C+ Y LR+ +GLP LREAIA H+++S Sbjct: 136 APSRYDFVGGASSKAQFPFDQWRSCLNYALRRSQRHPERQFPAQGLPELREAIAHHIAYS 195 Query: 179 RGVQCTAADVLVTNGAQQALDLIARVLVEPGSVVAVEDPGYPPARMLFSAQGARVESVPV 238 RGV C+AAD+LV NGAQQALDLIARVLVEPG VA+EDPGYPPAR LF A GAR++SVPV Sbjct: 196 RGVHCSAADLLVCNGAQQALDLIARVLVEPGCQVAMEDPGYPPARQLFLALGARLQSVPV 255 Query: 239 DSEGMRVDLIPDGTRLIYATPAHQFPLGMPMSPARRAALLARARELRAIVIEDDYDSEFR 298 D EG+ V+ I DGTRLIY TP+HQFPLGMPMS RR ALLARA EL A++IEDDYD EFR Sbjct: 256 DDEGLCVEQIADGTRLIYVTPSHQFPLGMPMSEPRRHALLARAAELGALIIEDDYDCEFR 315 Query: 299 YEGRPMDSLQSMDQDGLVAFVGTFSKSMNPELRVGYVIAPPSILRAMTVVKGLSDWHTPT 358 Y G D+LQ +D+ GLVA+VGTFSK++ PELR+GY + PP++L+A V K LSDWH+PT Sbjct: 316 YHGPASDALQRLDRHGLVAYVGTFSKTLLPELRLGYAVLPPAVLQAACVAKHLSDWHSPT 375 Query: 359 MTQWAMARFIDEGYLQKHIRRCHGIYVARREKLHAALNGTLKPWMCAVPTTAGFHLAARM 418 + QWA+ARF+ EG+L KHIRRCH +Y ARRE++ A L G L PW A+P +AGFHL+A Sbjct: 376 LLQWALARFLGEGHLNKHIRRCHEVYSARRERILARLGGDLAPWFSAIPASAGFHLSALA 435 Query: 419 TAEVDMTQLLRLARRVDVALYTLDEFYYRVKPEPALFFGYGAIESLDIETALGRVKTILE 478 T VD+ L LAR+V+V LY+L F+ P L G+GAIE LDI+ AL RV+ L+ Sbjct: 436 TPAVDVELLANLARKVEVGLYSLAPFFSEAPVRPGLLMGFGAIELLDIDPALDRVRDTLQ 495 Query: 479 EL 480 L Sbjct: 496 RL 497