BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0126.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004488970.1| ECF subfamily RNA polymerase sigma-24 factor... 209 1e-52 ref|YP_003980778.1| RNA polymerase sigma-24 subunit [Achromobact... 204 6e-51 ref|YP_004378999.1| ECF subfamily RNA polymerase sigma-24 factor... 197 5e-49 ref|YP_001667104.1| ECF subfamily RNA polymerase sigma-24 factor... 187 6e-46 ref|YP_004233304.1| ECF subfamily RNA polymerase sigma-24 subuni... 185 2e-45 >ref|YP_004488970.1| ECF subfamily RNA polymerase sigma-24 factor [Delftia sp. Cs1-4] gb|AEF90615.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Delftia sp. Cs1-4] Length = 207 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 106/171 (61%), Positives = 126/171 (73%), Gaps = 8/171 (4%) Query: 3 ESTLQPDMHSFYSSHHGWLFGWLRKKLGCTHNAADVAQDTFVRIIAXADVAQDTFVRILL 62 ES LQ M + Y+ HHGWL GWLR+++G +AADVA DTFVRI+A DV LL Sbjct: 34 ESALQQRMAALYADHHGWLRGWLRRRVGNAFDAADVAHDTFVRILASRDV--------LL 85 Query: 63 GVQEPRAYLTATAKRLLVDRARRQMIEQSYLAELALTMEQTEGYPGPEEILLAVEALEQI 122 G+ EPRAYLT TA+RLLVDRARRQ + Q+YL ELAL + GYP PEEIL+AV+ALEQI Sbjct: 86 GMAEPRAYLTTTARRLLVDRARRQAMAQAYLDELALVAQSLPGYPAPEEILMAVQALEQI 145 Query: 123 SAALQSVAAKAREAFLLHYLDGRTHAEVAAALGVSTRMVGKYLVQVLVKCR 173 AAL+ +A + REAFL HYLD + AE+A LGVSTRMV KYLVQ L+ CR Sbjct: 146 GAALEGLAERPREAFLRHYLDEQPQAEIAQGLGVSTRMVQKYLVQALLHCR 196 >ref|YP_003980778.1| RNA polymerase sigma-24 subunit [Achromobacter xylosoxidans A8] gb|ADP18063.1| RNA polymerase, sigma-24 subunit, ECF subfamily 2 [Achromobacter xylosoxidans A8] Length = 188 Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 98/170 (57%), Positives = 129/170 (75%), Gaps = 4/170 (2%) Query: 3 ESTLQPDMHSFYSSHHGWLFGWLRKKLGCTHNAADVAQDTFVRIIAXADVAQDTFVRILL 62 +S +Q H Y HH WLFGWLR+++GCTH+AAD+A DTF R++A ++D + L Sbjct: 18 DSGVQQQFHLLYRDHHSWLFGWLRRRMGCTHHAADLAHDTFERLLA----SRDALLGQPL 73 Query: 63 GVQEPRAYLTATAKRLLVDRARRQMIEQSYLAELALTMEQTEGYPGPEEILLAVEALEQI 122 G+QEPRAYLT TAKRLL+DRARR+++E++YLAEL + +P PE++L+A++ALEQI Sbjct: 74 GLQEPRAYLTTTAKRLLIDRARRELLERTYLAELERLAPELAQHPSPEQLLIAMQALEQI 133 Query: 123 SAALQSVAAKAREAFLLHYLDGRTHAEVAAALGVSTRMVGKYLVQVLVKC 172 AL+ V+AKAR AFLLHYL+G THA VA L VST+MV KYLVQVL+ C Sbjct: 134 CQALEGVSAKARAAFLLHYLEGHTHAYVAGQLKVSTKMVQKYLVQVLLHC 183 >ref|YP_004378999.1| ECF subfamily RNA polymerase sigma-24 factor [Pseudomonas mendocina NK-01] gb|AEB57247.1| ECF subfamily RNA polymerase sigma-24 factor [Pseudomonas mendocina NK-01] Length = 172 Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 90/171 (52%), Positives = 127/171 (74%), Gaps = 8/171 (4%) Query: 2 AESTLQPDMHSFYSSHHGWLFGWLRKKLGCTHNAADVAQDTFVRIIAXADVAQDTFVRIL 61 AE Q +H YS+HHGWLF WLR+KLGC+HNAAD+AQDTF RI++ +V L Sbjct: 4 AEPPFQQAIHELYSNHHGWLFAWLRRKLGCSHNAADLAQDTFARILSSREV--------L 55 Query: 62 LGVQEPRAYLTATAKRLLVDRARRQMIEQSYLAELALTMEQTEGYPGPEEILLAVEALEQ 121 ++EPRA+LT TA+RL++D++RR+ IE +YL ELALT+E GY PE+IL +EALEQ Sbjct: 56 GTIREPRAFLTTTARRLVIDKSRRKQIEDAYLRELALTVESLSGYQSPEQILTTLEALEQ 115 Query: 122 ISAALQSVAAKAREAFLLHYLDGRTHAEVAAALGVSTRMVGKYLVQVLVKC 172 I+ L+ ++AK R+AFLL++LDG++ ++A +G+S RMV K+L+Q L+ C Sbjct: 116 IAFVLEELSAKQRQAFLLYFLDGQSQIDIAVQMGISERMVRKHLLQALLHC 166 >ref|YP_001667104.1| ECF subfamily RNA polymerase sigma-24 factor [Pseudomonas putida GB-1] gb|ABY96768.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Pseudomonas putida GB-1] Length = 175 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 93/172 (54%), Positives = 122/172 (70%), Gaps = 8/172 (4%) Query: 1 VAESTLQPDMHSFYSSHHGWLFGWLRKKLGCTHNAADVAQDTFVRIIAXADVAQDTFVRI 60 VA+S + YS HHGWLF WLR+KL C+H+AAD+AQDTFVRI+A D Sbjct: 3 VADSPSPYPLEQLYSEHHGWLFSWLRRKLRCSHSAADLAQDTFVRILASRDA-------- 54 Query: 61 LLGVQEPRAYLTATAKRLLVDRARRQMIEQSYLAELALTMEQTEGYPGPEEILLAVEALE 120 LLG++EPRAYL+ TA+RLL+D+ARR+ IE++YL+ELALT E EG+ PE IL+ +EALE Sbjct: 55 LLGMREPRAYLSTTARRLLIDQARRRQIEEAYLSELALTAELLEGHQPPENILITLEALE 114 Query: 121 QISAALQSVAAKAREAFLLHYLDGRTHAEVAAALGVSTRMVGKYLVQVLVKC 172 QI+ L+ + AREAF+ +YLD T ++A L +S RMV KYL Q L+ C Sbjct: 115 QIAFLLEGLHVNAREAFVGYYLDELTQPQIAQRLQISPRMVRKYLAQALIHC 166 >ref|YP_004233304.1| ECF subfamily RNA polymerase sigma-24 subunit [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX44737.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Acidovorax avenae subsp. avenae ATCC 19860] Length = 171 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 95/170 (55%), Positives = 123/170 (72%), Gaps = 9/170 (5%) Query: 3 ESTLQPDMHSFYSSHHGWLFGWLRKKLGCTHNAADVAQDTFVRIIAXADVAQDTFVRILL 62 E+ LQ + + Y HHGWL WLR+KLGC H AADVA DTF+RI+ V L Sbjct: 5 ETALQQHVSALYCEHHGWLLAWLRRKLGCGHQAADVAHDTFLRILGTPTV--------LP 56 Query: 63 GVQEPRAYLTATAKRLLVDRARRQMIEQSYLAELALTMEQTEGYPGPEEILLAVEALEQI 122 ++EPRAYL TA+RLL+D ARR++IEQ+YL LA+ + T+G P E+++ ++AL +I Sbjct: 57 TLREPRAYLVTTARRLLIDEARRRVIEQAYLDALAV-VAGTDGGPSTEQVVETIQALVRI 115 Query: 123 SAALQSVAAKAREAFLLHYLDGRTHAEVAAALGVSTRMVGKYLVQVLVKC 172 AALQ ++A+A++AFLLHYL+G HAEVAAALGVSTRMV KYLVQ LV C Sbjct: 116 EAALQDLSARAQQAFLLHYLEGLPHAEVAAALGVSTRMVQKYLVQALVCC 165