BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0109.p (478 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08276119.1| Cytochrome c oxidase subunit CcoN [Oxalobacte... 871 0.0 ref|YP_001353321.1| cb-type cytochrome c oxidase subunit I [Jant... 867 0.0 emb|CAL61802.2| Cytochrome c oxidase cbb3-type, subunit 1 [Hermi... 864 0.0 ref|YP_001099927.1| cbb3-type cytochrome c oxidase subunit I [He... 863 0.0 ref|YP_003776593.1| cbb3-type cytochrome c oxidase subunit I tra... 786 0.0 >ref|ZP_08276119.1| Cytochrome c oxidase subunit CcoN [Oxalobacteraceae bacterium IMCC9480] gb|EGF30408.1| Cytochrome c oxidase subunit CcoN [Oxalobacteraceae bacterium IMCC9480] Length = 475 Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/467 (89%), Positives = 445/467 (95%) Query: 4 ELNYNYRIVKQFTIATVVWGVIGMLAGVFIAAQLAWPALNFDIPWLTYGRLRPLHTNAVI 63 ELNYNY++VKQFTIATVVWGVIGML GV IAAQLAWPALNFDIPWLTYGRLRPLHTNAVI Sbjct: 4 ELNYNYKVVKQFTIATVVWGVIGMLVGVIIAAQLAWPALNFDIPWLTYGRLRPLHTNAVI 63 Query: 64 FAFGICGLFATSYYVVQRTCQVRLFSDKLAAFTFWGWQLVLVSAAITLPMGFTRGKEYAE 123 FAFGICGLFATSYYVVQRTCQVRLFSD LAAFTFWGWQLVL+ A I+LP+GFTRGKEYAE Sbjct: 64 FAFGICGLFATSYYVVQRTCQVRLFSDGLAAFTFWGWQLVLICATISLPLGFTRGKEYAE 123 Query: 124 LEWPIALLITVVWVTYAVVFFGTLIKRKVRHIYVANWFFGAYIIAVALLHVVNGAAMPVS 183 LEWPIALLITVVWV YAVVFFGTL+KRKV+HIYVANWFFGA+I+AVA+LH+VNGA+MP S Sbjct: 124 LEWPIALLITVVWVAYAVVFFGTLVKRKVKHIYVANWFFGAFILAVAILHIVNGASMPAS 183 Query: 184 LWKSYSAYAGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIVHFW 243 KSYSAY+GVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIVHFW Sbjct: 184 FTKSYSAYSGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIVHFW 243 Query: 244 ALIFTYMWAGPHHLHYTALPDWTQSIGMVFSLILLAPSWGGMINGIMTLSGAWHKLRSDP 303 ALIFTYMWAGPHHLHYTALPDWTQS+ +VFSLILLAPSWGGMINGIMTLSGAWHKLRSDP Sbjct: 244 ALIFTYMWAGPHHLHYTALPDWTQSLAVVFSLILLAPSWGGMINGIMTLSGAWHKLRSDP 303 Query: 304 LLKFMIVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVHSGALGWVGFITMGSIYYL 363 +LKFMIVSLSFYGM+TFEGPMMSIKT+N+LSHYTDW IAHVHSGALGWVGFITMGSIYYL Sbjct: 304 ILKFMIVSLSFYGMSTFEGPMMSIKTINSLSHYTDWTIAHVHSGALGWVGFITMGSIYYL 363 Query: 364 IPRMSGKREMWSVRLVDLHFWVATIGVVLYIASMWIAGVMQGLMWRAVNADGTLTYTFAE 423 IPR+SGK MWS RLVD HFWVATIGVVLYI+SMWIAGVMQGLMWRAVNADGTLTY+F E Sbjct: 364 IPRLSGKNAMWSPRLVDTHFWVATIGVVLYISSMWIAGVMQGLMWRAVNADGTLTYSFVE 423 Query: 424 GVKATYPYYVIRFTGGLLYLTGMVMMAYNTYRTMRDGQPVEARIPVL 470 GVKATYPYYVIR +GGLLY +GMVMMA+NT+ TMRDG VEARIP L Sbjct: 424 GVKATYPYYVIRVSGGLLYFSGMVMMAFNTFMTMRDGTAVEARIPSL 470 >ref|YP_001353321.1| cb-type cytochrome c oxidase subunit I [Janthinobacterium sp. Marseille] gb|ABR88525.1| cb-type cytochrome c oxidase subunit I [Janthinobacterium sp. Marseille] Length = 474 Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/473 (88%), Positives = 445/473 (94%) Query: 1 VDRELNYNYRIVKQFTIATVVWGVIGMLAGVFIAAQLAWPALNFDIPWLTYGRLRPLHTN 60 +D LNYNY++V+QF IATVVWGVIGML GVFIAAQLAWPALNFDI WL+YGRLRPLHTN Sbjct: 1 MDTALNYNYKVVRQFAIATVVWGVIGMLVGVFIAAQLAWPALNFDIAWLSYGRLRPLHTN 60 Query: 61 AVIFAFGICGLFATSYYVVQRTCQVRLFSDKLAAFTFWGWQLVLVSAAITLPMGFTRGKE 120 VIFAFGICGLFATSYYVVQRTCQVRL SDKLAAFTFWGWQLVLV A ITLPMG+TRGKE Sbjct: 61 GVIFAFGICGLFATSYYVVQRTCQVRLSSDKLAAFTFWGWQLVLVLAVITLPMGWTRGKE 120 Query: 121 YAELEWPIALLITVVWVTYAVVFFGTLIKRKVRHIYVANWFFGAYIIAVALLHVVNGAAM 180 YAELEWPIA+LIT+VWV YAVVFFGTLIKRKV+HIYVANWFFGAYIIAVALLH+VNGA M Sbjct: 121 YAELEWPIAILITIVWVAYAVVFFGTLIKRKVQHIYVANWFFGAYIIAVALLHIVNGAVM 180 Query: 181 PVSLWKSYSAYAGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIV 240 P SL KSYSAYAGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIV Sbjct: 181 PASLGKSYSAYAGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIV 240 Query: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSIGMVFSLILLAPSWGGMINGIMTLSGAWHKLR 300 HFWALIFTYMWAGPHHLHYTALPDWTQSIGMVFSLILLAPSWGGMING+MTLSGAWHKLR Sbjct: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSIGMVFSLILLAPSWGGMINGMMTLSGAWHKLR 300 Query: 301 SDPLLKFMIVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVHSGALGWVGFITMGSI 360 SDP+LKF+IVSLSFYG+ATFEGPMMSIKTVNALSHYTDW I HVH+GALGWVGFITMGSI Sbjct: 301 SDPILKFLIVSLSFYGIATFEGPMMSIKTVNALSHYTDWTIGHVHAGALGWVGFITMGSI 360 Query: 361 YYLIPRMSGKREMWSVRLVDLHFWVATIGVVLYIASMWIAGVMQGLMWRAVNADGTLTYT 420 YYLIPR+SGK++MWS L++LHFWVATIG+VLYIASMWIAGVMQGLMWRAVN DGTLTYT Sbjct: 361 YYLIPRLSGKKQMWSTNLIELHFWVATIGIVLYIASMWIAGVMQGLMWRAVNPDGTLTYT 420 Query: 421 FAEGVKATYPYYVIRFTGGLLYLTGMVMMAYNTYRTMRDGQPVEARIPVLTNH 473 F E VKATYPYYVIRFTGG LYL GM++MAYNT+ TMRDG+ V ARIP + H Sbjct: 421 FVESVKATYPYYVIRFTGGALYLGGMLLMAYNTFMTMRDGEAVAARIPAVAAH 473 >emb|CAL61802.2| Cytochrome c oxidase cbb3-type, subunit 1 [Herminiimonas arsenicoxydans] Length = 483 Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/478 (87%), Positives = 448/478 (93%), Gaps = 3/478 (0%) Query: 1 VDRELNYNYRIVKQFTIATVVWGVIGMLAGVFIAAQLAWPALNFDIPWLTYGRLRPLHTN 60 VD LNYNY+IVKQF IATVVWGVIGML GVFIAAQLAWPALNFDI WL+YGRLRPLHTN Sbjct: 9 VDTALNYNYKIVKQFAIATVVWGVIGMLVGVFIAAQLAWPALNFDIAWLSYGRLRPLHTN 68 Query: 61 AVIFAFGICGLFATSYYVVQRTCQVRLFSDKLAAFTFWGWQLVLVSAAITLPMGFTRGKE 120 VIFAFGICGLFATSYYVVQRTCQVRLFSDKLAAFTFWGWQLVLV A ITLPMG+TR KE Sbjct: 69 GVIFAFGICGLFATSYYVVQRTCQVRLFSDKLAAFTFWGWQLVLVLAVITLPMGWTRAKE 128 Query: 121 YAELEWPIALLITVVWVTYAVVFFGTLIKRKVRHIYVANWFFGAYIIAVALLHVVNGAAM 180 YAELEWPI +LIT+VWV YAVVFFGT++KRKV HIYVANWFFG YIIAVALLH+VNG +M Sbjct: 129 YAELEWPITILITIVWVAYAVVFFGTIVKRKVAHIYVANWFFGGYIIAVALLHIVNGISM 188 Query: 181 PVSLWKSYSAYAGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIV 240 P S+ KSYSAY+GVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIV Sbjct: 189 PASIGKSYSAYSGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIV 248 Query: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSIGMVFSLILLAPSWGGMINGIMTLSGAWHKLR 300 HFWALIFTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMING+MTLSGAWHKLR Sbjct: 249 HFWALIFTYMWAGPHHLHYTALPDWTQSVGMVFSLILLAPSWGGMINGMMTLSGAWHKLR 308 Query: 301 SDPLLKFMIVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVHSGALGWVGFITMGSI 360 SDP+LKF+IVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVH+GALGWVGFITMGSI Sbjct: 309 SDPILKFLIVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVHAGALGWVGFITMGSI 368 Query: 361 YYLIPRMSGKREMWSVRLVDLHFWVATIGVVLYIASMWIAGVMQGLMWRAVNADGTLTYT 420 YYLIPR+SGK+EMWS RL++ HFWVATIG+VLYIASMWIAGVMQGLMWRAVN DGTLTYT Sbjct: 369 YYLIPRLSGKKEMWSTRLIETHFWVATIGIVLYIASMWIAGVMQGLMWRAVNPDGTLTYT 428 Query: 421 FAEGVKATYPYYVIRFTGGLLYLTGMVMMAYNTYRTMRDGQPVEARIPVLTNHVSTHA 478 F E VKATYPYYVIRFTGG+LYL+GM++MAYNT+ TMRD + V ARIP + V+ HA Sbjct: 429 FVESVKATYPYYVIRFTGGVLYLSGMLLMAYNTWMTMRDSEAVHARIP---DVVAAHA 483 >ref|YP_001099927.1| cbb3-type cytochrome c oxidase subunit I [Herminiimonas arsenicoxydans] Length = 475 Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/478 (87%), Positives = 448/478 (93%), Gaps = 3/478 (0%) Query: 1 VDRELNYNYRIVKQFTIATVVWGVIGMLAGVFIAAQLAWPALNFDIPWLTYGRLRPLHTN 60 +D LNYNY+IVKQF IATVVWGVIGML GVFIAAQLAWPALNFDI WL+YGRLRPLHTN Sbjct: 1 MDTALNYNYKIVKQFAIATVVWGVIGMLVGVFIAAQLAWPALNFDIAWLSYGRLRPLHTN 60 Query: 61 AVIFAFGICGLFATSYYVVQRTCQVRLFSDKLAAFTFWGWQLVLVSAAITLPMGFTRGKE 120 VIFAFGICGLFATSYYVVQRTCQVRLFSDKLAAFTFWGWQLVLV A ITLPMG+TR KE Sbjct: 61 GVIFAFGICGLFATSYYVVQRTCQVRLFSDKLAAFTFWGWQLVLVLAVITLPMGWTRAKE 120 Query: 121 YAELEWPIALLITVVWVTYAVVFFGTLIKRKVRHIYVANWFFGAYIIAVALLHVVNGAAM 180 YAELEWPI +LIT+VWV YAVVFFGT++KRKV HIYVANWFFG YIIAVALLH+VNG +M Sbjct: 121 YAELEWPITILITIVWVAYAVVFFGTIVKRKVAHIYVANWFFGGYIIAVALLHIVNGISM 180 Query: 181 PVSLWKSYSAYAGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIV 240 P S+ KSYSAY+GVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIV Sbjct: 181 PASIGKSYSAYSGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIV 240 Query: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSIGMVFSLILLAPSWGGMINGIMTLSGAWHKLR 300 HFWALIFTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMING+MTLSGAWHKLR Sbjct: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSVGMVFSLILLAPSWGGMINGMMTLSGAWHKLR 300 Query: 301 SDPLLKFMIVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVHSGALGWVGFITMGSI 360 SDP+LKF+IVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVH+GALGWVGFITMGSI Sbjct: 301 SDPILKFLIVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVHAGALGWVGFITMGSI 360 Query: 361 YYLIPRMSGKREMWSVRLVDLHFWVATIGVVLYIASMWIAGVMQGLMWRAVNADGTLTYT 420 YYLIPR+SGK+EMWS RL++ HFWVATIG+VLYIASMWIAGVMQGLMWRAVN DGTLTYT Sbjct: 361 YYLIPRLSGKKEMWSTRLIETHFWVATIGIVLYIASMWIAGVMQGLMWRAVNPDGTLTYT 420 Query: 421 FAEGVKATYPYYVIRFTGGLLYLTGMVMMAYNTYRTMRDGQPVEARIPVLTNHVSTHA 478 F E VKATYPYYVIRFTGG+LYL+GM++MAYNT+ TMRD + V ARIP + V+ HA Sbjct: 421 FVESVKATYPYYVIRFTGGVLYLSGMLLMAYNTWMTMRDSEAVHARIP---DVVAAHA 475 >ref|YP_003776593.1| cbb3-type cytochrome c oxidase subunit I transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64685.1| cbb3-type cytochrome c oxidase, subunit I transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/472 (80%), Positives = 430/472 (91%) Query: 1 VDRELNYNYRIVKQFTIATVVWGVIGMLAGVFIAAQLAWPALNFDIPWLTYGRLRPLHTN 60 + +E +YNY +V+QFT+AT++WGV+GML GV IAAQLAWP LN +PWL++GRLRPLHTN Sbjct: 1 MSKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTN 60 Query: 61 AVIFAFGICGLFATSYYVVQRTCQVRLFSDKLAAFTFWGWQLVLVSAAITLPMGFTRGKE 120 AVIFAFG C L ATSYYVVQRTCQVRLFSD LAAFTFWGWQLV+V AAI+LP+G TRGKE Sbjct: 61 AVIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKE 120 Query: 121 YAELEWPIALLITVVWVTYAVVFFGTLIKRKVRHIYVANWFFGAYIIAVALLHVVNGAAM 180 YAELEWP+ +LI VVWV YAVVFFGTLIKRKV+HIYVANWF+GA+IIAVA+LH+VNG M Sbjct: 121 YAELEWPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTM 180 Query: 181 PVSLWKSYSAYAGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIV 240 P +L KSYS Y+G QDAMIQWWYGHNAVGF LTAG+LGM+YYFIPKQ RPVYSYRLSIV Sbjct: 181 PATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIV 240 Query: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSIGMVFSLILLAPSWGGMINGIMTLSGAWHKLR 300 HFWALIFTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMING+MTLSGAWH+LR Sbjct: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLR 300 Query: 301 SDPLLKFMIVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVHSGALGWVGFITMGSI 360 +DP+LKF++VSLSFYGM+TFEGPMM+IKTVNALSHYTDW I HVHSGALGWVGF+TMG++ Sbjct: 301 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAM 360 Query: 361 YYLIPRMSGKREMWSVRLVDLHFWVATIGVVLYIASMWIAGVMQGLMWRAVNADGTLTYT 420 YYLIPR+SGK +MWS L+++HFWVATIG+VLYIA+MWIAGVMQGLMWRAVNADGTLTYT Sbjct: 361 YYLIPRLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYT 420 Query: 421 FAEGVKATYPYYVIRFTGGLLYLTGMVMMAYNTYRTMRDGQPVEARIPVLTN 472 F E VKATYPYYVIR GGL+YL+GM++MAYNT+RTMR + A IP +TN Sbjct: 421 FVESVKATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTN 472