BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0108.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001353322.1| cb-type cytochrome c oxidase subunit II [Jan... 375 e-102 ref|YP_001099926.1| cbb3-type cytochrome c oxidase subunit II [H... 372 e-101 ref|ZP_08276120.1| Cytochrome c oxidase subunit CcoO [Oxalobacte... 363 9e-99 ref|YP_003776592.1| cbb3-type cytochrome c oxidase subunit II tr... 337 6e-91 ref|YP_004127934.1| cytochrome c oxidase, cbb3-type, subunit ii ... 328 4e-88 >ref|YP_001353322.1| cb-type cytochrome c oxidase subunit II [Janthinobacterium sp. Marseille] gb|ABR88270.1| cb-type cytochrome c oxidase subunit II [Janthinobacterium sp. Marseille] Length = 204 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/203 (87%), Positives = 185/203 (91%) Query: 1 MKFSHEWIEKNPWLLIALVVLVVSVGGLVEIVPLFFQRSTTEPIAGLKPYSPLRLAGRDV 60 MKFSHEWIEKNPWLLIALV LVVSVGG VEIVPLFFQ+STTEP+AGLKPYS LRLAGRDV Sbjct: 1 MKFSHEWIEKNPWLLIALVTLVVSVGGAVEIVPLFFQKSTTEPVAGLKPYSALRLAGRDV 60 Query: 61 YIREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDHPFQWGSKRTGPDLARVGARYSDE 120 Y REGCYNCHSQMIRPFRAETERYGHYSVAGEFVYD PFQWGSKRTGPDLARVG RYSDE Sbjct: 61 YTREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGGRYSDE 120 Query: 121 WHRIHLNNPRDVVPESNMPGYPWLAKTRLDPNSIAPKMRALHRLGVPYTDEEIKAAPAEL 180 WHR HL+ PRD+VPESNMPGYPWL KT+L PN I P+MRAL RLGVPYTDEEIKAAPAEL Sbjct: 121 WHRTHLDRPRDLVPESNMPGYPWLVKTKLVPNDIMPRMRALQRLGVPYTDEEIKAAPAEL 180 Query: 181 ADKTEEDALVAYLQGLGTQIKTR 203 KTE+DALVAYLQGLG IK R Sbjct: 181 DGKTEQDALVAYLQGLGILIKAR 203 >ref|YP_001099926.1| cbb3-type cytochrome c oxidase subunit II [Herminiimonas arsenicoxydans] emb|CAL61801.1| Cytochrome c oxidase cbb3-type, monoheme subunit [Herminiimonas arsenicoxydans] Length = 204 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/203 (86%), Positives = 185/203 (91%) Query: 1 MKFSHEWIEKNPWLLIALVVLVVSVGGLVEIVPLFFQRSTTEPIAGLKPYSPLRLAGRDV 60 MKFSHEWIEKNPWLLIALV LVVSVGG VEIVPLFFQ+STTEP+AGLKPYSPLRLAGRD+ Sbjct: 1 MKFSHEWIEKNPWLLIALVTLVVSVGGAVEIVPLFFQKSTTEPVAGLKPYSPLRLAGRDI 60 Query: 61 YIREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDHPFQWGSKRTGPDLARVGARYSDE 120 Y REGCYNCHSQMIRPFRAETERYGHYSVAGEFVYD PFQWGSKRTGPDLARVG RYSDE Sbjct: 61 YTREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGGRYSDE 120 Query: 121 WHRIHLNNPRDVVPESNMPGYPWLAKTRLDPNSIAPKMRALHRLGVPYTDEEIKAAPAEL 180 WHRIHL+NPR VVPESNMP YPWLAKT+L P I PKM AL RLGVPYT++E+KAAP EL Sbjct: 121 WHRIHLDNPRHVVPESNMPNYPWLAKTKLVPEEIIPKMNALRRLGVPYTEDEVKAAPDEL 180 Query: 181 ADKTEEDALVAYLQGLGTQIKTR 203 KTE+DAL+AYLQGLGT IK R Sbjct: 181 VGKTEQDALIAYLQGLGTLIKAR 203 >ref|ZP_08276120.1| Cytochrome c oxidase subunit CcoO [Oxalobacteraceae bacterium IMCC9480] gb|EGF30409.1| Cytochrome c oxidase subunit CcoO [Oxalobacteraceae bacterium IMCC9480] Length = 204 Score = 363 bits (932), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 166/204 (81%), Positives = 182/204 (89%) Query: 1 MKFSHEWIEKNPWLLIALVVLVVSVGGLVEIVPLFFQRSTTEPIAGLKPYSPLRLAGRDV 60 MKFSH WIEKNPWLLIALV++V+S+GGLVEIVPLFFQ STTEPI GLKPYS LRL+GRD+ Sbjct: 1 MKFSHAWIEKNPWLLIALVLVVISIGGLVEIVPLFFQSSTTEPITGLKPYSALRLSGRDI 60 Query: 61 YIREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDHPFQWGSKRTGPDLARVGARYSDE 120 Y+REGCYNCHSQMIRP RAETERYGHYSVAGEFVYD PFQWGSKRTGPDLARVGARYSD+ Sbjct: 61 YVREGCYNCHSQMIRPLRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGARYSDD 120 Query: 121 WHRIHLNNPRDVVPESNMPGYPWLAKTRLDPNSIAPKMRALHRLGVPYTDEEIKAAPAEL 180 WH IHLNNPRD+VPESNMPGYPWLA T+L P + KMRAL RLG PYT++E+K P L Sbjct: 121 WHAIHLNNPRDLVPESNMPGYPWLATTKLVPGDVTAKMRALQRLGTPYTEQEVKDGPGTL 180 Query: 181 ADKTEEDALVAYLQGLGTQIKTRN 204 KTE+DAL+AYLQGLGT IKTRN Sbjct: 181 EGKTEQDALIAYLQGLGTLIKTRN 204 >ref|YP_003776592.1| cbb3-type cytochrome c oxidase subunit II transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64684.1| cbb3-type cytochrome c oxidase, subunit II transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 204 Score = 337 bits (864), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 166/202 (82%), Positives = 179/202 (88%) Query: 1 MKFSHEWIEKNPWLLIALVVLVVSVGGLVEIVPLFFQRSTTEPIAGLKPYSPLRLAGRDV 60 MKFSHEWIEKNPWLLI LV+LVVS+GGL EIVPLFFQ+STTEPIAGLKPYS LRLAGRDV Sbjct: 1 MKFSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV 60 Query: 61 YIREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDHPFQWGSKRTGPDLARVGARYSDE 120 YIREGCYNCHSQMIRP RAETERYGHYSVAGE VYDHPFQWGSKRTGPDLARVG RYSDE Sbjct: 61 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDE 120 Query: 121 WHRIHLNNPRDVVPESNMPGYPWLAKTRLDPNSIAPKMRALHRLGVPYTDEEIKAAPAEL 180 WHR HL+NPRDVVPESNMP YPWL + +LD I +M+AL R+G PYT+E+IK APAEL Sbjct: 121 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL 180 Query: 181 ADKTEEDALVAYLQGLGTQIKT 202 KTE+DAL+AYLQGLG IK Sbjct: 181 VGKTEQDALIAYLQGLGVLIKA 202 >ref|YP_004127934.1| cytochrome c oxidase, cbb3-type, subunit ii [Alicycliphilus denitrificans BC] ref|YP_004387042.1| cytochrome c oxidase, cbb3-type subunit II [Alicycliphilus denitrificans K601] gb|ADV01047.1| cytochrome c oxidase, cbb3-type, subunit II [Alicycliphilus denitrificans BC] gb|AEB83526.1| cytochrome c oxidase, cbb3-type, subunit II [Alicycliphilus denitrificans K601] Length = 210 Score = 328 bits (840), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 149/199 (74%), Positives = 172/199 (86%) Query: 3 FSHEWIEKNPWLLIALVVLVVSVGGLVEIVPLFFQRSTTEPIAGLKPYSPLRLAGRDVYI 62 F+HE +E + +L+I L++LVV++GGLVEIVPLFFQ+STTE + GLKPY+PL+LAGRD+Y+ Sbjct: 12 FTHEKVETSNFLMIVLILLVVAIGGLVEIVPLFFQKSTTEAVQGLKPYTPLQLAGRDIYV 71 Query: 63 REGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDHPFQWGSKRTGPDLARVGARYSDEWH 122 REGCYNCHSQMIRPFRAET RYGHYSVAGEFVYDHPFQWGSKRTGPDL RVG +YSDEWH Sbjct: 72 REGCYNCHSQMIRPFRAETLRYGHYSVAGEFVYDHPFQWGSKRTGPDLHRVGGKYSDEWH 131 Query: 123 RIHLNNPRDVVPESNMPGYPWLAKTRLDPNSIAPKMRALHRLGVPYTDEEIKAAPAELAD 182 RIHLNNPRDVVPESNMP YPWL KT+LDP AP M+AL +GVPYTDEEI A ++ Sbjct: 132 RIHLNNPRDVVPESNMPAYPWLEKTQLDPAVSAPHMKALRTVGVPYTDEEIAGAAEQVKG 191 Query: 183 KTEEDALVAYLQGLGTQIK 201 KTE DALVAYLQ LG ++ Sbjct: 192 KTEMDALVAYLQVLGRTLR 210