BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0089.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777981.1| amino acid ABC transporter permease [Herbasp... 365 4e-99 ref|YP_001415090.1| polar amino acid ABC transporter inner membr... 267 1e-69 ref|YP_001526199.1| amino acid ABC transporter permease [Azorhiz... 261 6e-68 ref|YP_003962779.1| polar amino acid ABC transporter inner membr... 258 4e-67 ref|YP_003693667.1| polar amino acid ABC transporter inner membr... 252 4e-65 >ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66073.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 277 Score = 365 bits (937), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 194/279 (69%), Positives = 219/279 (78%), Gaps = 20/279 (7%) Query: 1 MGFTLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVAIGTLIAFLKRGSNPYIAKACSAY 60 M F+L+F+PLAPYWPVFL GAWLTLKMTT+A++VGVAIG +AF K + ++A+ CSAY Sbjct: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 Query: 61 IEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKGQ 120 IE VRNTPFLVQIFLLYFGLASLGI MPTFAAAVLAMIINIAAYAAEIIRAGL+SVP+GQ Sbjct: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 Query: 121 IEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAA+CLGLS WRI WHVMLQP+IERVYPALTSQFLLMMQASAMASQISAEELTAIANTV Sbjct: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 Query: 181 QSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFK------------RRRIIRR--- 225 QSDTFRSLETY+VVA +YL L+ILVKL+A+ GE +FK RR + R Sbjct: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTLRRAAAQGRRTPVSRLPA 240 Query: 226 ---AALEAARRRPPAIPPFQPVAATAAATAANTTNGSAS 261 AA+ P P +PVA AA+ GSAS Sbjct: 241 TDPAAMAPLAHVPYVHPASRPVAVNTAASL--RIEGSAS 277 >ref|YP_001415090.1| polar amino acid ABC transporter inner membrane subunit [Xanthobacter autotrophicus Py2] gb|ABS65433.1| polar amino acid ABC transporter, inner membrane subunit [Xanthobacter autotrophicus Py2] Length = 227 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 125/221 (56%), Positives = 169/221 (76%) Query: 1 MGFTLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVAIGTLIAFLKRGSNPYIAKACSAY 60 M + +FA L PYW F G WLTL+++ VA V+G +GTL A + P++ + Y Sbjct: 1 MTYQFDFAALLPYWREFAMGVWLTLQLSFVATVLGFVLGTLCAIGRSDGAPWVKALVACY 60 Query: 61 IEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKGQ 120 +E +RNTP LVQIF++YFG+A+LG+H+ AAVLA+++N+ AY +EI+RAGLES+ K Q Sbjct: 61 VEVIRNTPLLVQIFIIYFGIATLGLHVDANVAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 +EAAECLGLSR + WHV+++P+IERVYPALTSQ++L+M AS++ SQISAEELTA+AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFKRRR 221 QSDTFRS ETYIVV +YLALS +V++ W FG +F RRR Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRIAFWLFGLVVFVRRR 221 >ref|YP_001526199.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF89281.1| amino acid ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 227 Score = 261 bits (668), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 123/221 (55%), Positives = 169/221 (76%) Query: 1 MGFTLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVAIGTLIAFLKRGSNPYIAKACSAY 60 M + +FA L P+W F G WLTL+++ ++ V+G +GTL A + P++ + Y Sbjct: 1 MTYQFDFAVLLPFWREFAMGVWLTLQLSLISTVLGFILGTLCAIGRADGPPWVKFLVATY 60 Query: 61 IEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKGQ 120 +E +RNTP LVQ+F++YFG+A+LGIH+ AAVLA+++N+ AY +EI+RAGLES+ K Q Sbjct: 61 VEIIRNTPLLVQVFIVYFGIATLGIHVSANLAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 +EAAECLGLSR + WHV+++P+IERVYPALTSQ++L+M AS++ SQISAEELTA+AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFKRRR 221 QSDTFRS ETYIVV +YLALS +V+L W FG +F RRR Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRLAFWLFGLVVFVRRR 221 >ref|YP_003962779.1| polar amino acid ABC transporter inner membrane protein [Ketogulonicigenium vulgare Y25] gb|ADO41479.1| polar amino acid ABC transporter, inner membrane subunit [Ketogulonicigenium vulgare Y25] gb|AEM42333.1| Amino acid ABC transporter permease protein [Ketogulonigenium vulgarum WSH-001] Length = 226 Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 115/223 (51%), Positives = 166/223 (74%) Query: 1 MGFTLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVAIGTLIAFLKRGSNPYIAKACSAY 60 M + NFA L PYWP F++GAW+TL++T A++ G+ IG L A +R + Y Sbjct: 1 MSYQFNFAALVPYWPDFISGAWVTLQLTVGAVIFGMVIGVLCAIARRSRFVALRSVAGVY 60 Query: 61 IEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKGQ 120 +E VRNTPF+VQIF L+FG++S+G+ MP AA+ A+++N+ AY AEIIRAG++++PKGQ Sbjct: 61 VETVRNTPFIVQIFFLFFGMSSVGVRMPIMVAAIFALVVNVGAYTAEIIRAGMDAIPKGQ 120 Query: 121 IEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAAE LGLS+++I ++L P+IE+VYPALTSQF+LMM +++ SQISAEELT +AN + Sbjct: 121 IEAAEALGLSQFQIYRDIILMPAIEKVYPALTSQFVLMMLTTSICSQISAEELTGVANNI 180 Query: 181 QSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFKRRRII 223 QS+TFRS ETYIV+ Y+ ++++++ W G Y F RRR++ Sbjct: 181 QSNTFRSFETYIVIGLFYIGITLMMRFGFWLIGLYAFPRRRVM 223 >ref|YP_003693667.1| polar amino acid ABC transporter inner membrane subunit [Starkeya novella DSM 506] gb|ADH89048.1| polar amino acid ABC transporter, inner membrane subunit [Starkeya novella DSM 506] Length = 227 Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 123/221 (55%), Positives = 161/221 (72%) Query: 1 MGFTLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVAIGTLIAFLKRGSNPYIAKACSAY 60 MG L+F+ + W L GA LTL++ +A+V G IG A +RG NP I + C AY Sbjct: 1 MGLELDFSVVLDRWRSLLDGATLTLELAFIAVVCGAIIGVFGAIGRRGGNPLIERLCGAY 60 Query: 61 IEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKGQ 120 +E +RNTP LVQIFL+YFGL+SLG+ F A +A+ IN+ AY EI+RAG +S+ +GQ Sbjct: 61 VEGIRNTPLLVQIFLVYFGLSSLGLKFSAFTVAAVALTINVGAYTTEIMRAGFDSIVRGQ 120 Query: 121 IEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAAE LGLS+ +I WHV++ P IERVYPALTSQF+L+M AS++ SQISAEELTA+AN + Sbjct: 121 IEAAEGLGLSKAQIYWHVIIWPGIERVYPALTSQFVLLMLASSVTSQISAEELTAVANYI 180 Query: 181 QSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFKRRR 221 QS+T+RS ETYIVVA +Y+ALS +++ W G LF RRR Sbjct: 181 QSETYRSFETYIVVALIYVALSFVMRFGFWLLGLALFPRRR 221