BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0088.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777980.1| amino acid ABC transporter permease [Herbasp... 365 2e-99 ref|YP_001768634.1| polar amino acid ABC transporter inner membr... 285 3e-75 ref|YP_003962780.1| polar amino acid ABC transporter inner membr... 265 5e-69 ref|YP_001525533.1| amino acid ABC transporter permease [Azorhiz... 263 9e-69 ref|YP_003774920.1| amino acid ABC transporter permease [Herbasp... 253 1e-65 >ref|YP_003777980.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66072.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 365 bits (938), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 180/217 (82%), Positives = 198/217 (91%) Query: 1 MIGSFSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECI 60 M+G FSW +F ++VQSI WTLVLS LAF+LG GGF VMLARISP WL P +++IEC+ Sbjct: 1 MMGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECV 60 Query: 61 QGIPLLILLFIVYFGLSVYGFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAA 120 QGIPLLILLFIVYFGLSVYG LPALVAAGLAMM+YTSAYLGDIWRGCVEAMPRPQWEA+ Sbjct: 61 QGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEAS 120 Query: 121 ECLSLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSI 180 ECLSLTRWQTLRLVIIPQA RLSLPPT+GFLVQ+IKMTSLASVIGF+ELTRAGQIINNSI Sbjct: 121 ECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSI 180 Query: 181 FQPFLIFSLVGAFYFVLCYPLSRWSESMENKLNVSNR 217 FQPFL+F LVG+FYF+LCYPLSRWS SME KLNVS+R Sbjct: 181 FQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 >ref|YP_001768634.1| polar amino acid ABC transporter inner membrane subunit [Methylobacterium sp. 4-46] gb|ACA16200.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium sp. 4-46] Length = 219 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 137/216 (63%), Positives = 171/216 (79%) Query: 2 IGSFSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECIQ 61 +G FS H ++L++ + WT+VL+ LAF+LGS+ GFGVML RI+ RW+ Y++ IQ Sbjct: 1 MGGFSLNHLVFLLEGVGWTVVLTALAFLLGSLAGFGVMLLRIARARWVRRLAFAYVQVIQ 60 Query: 62 GIPLLILLFIVYFGLSVYGFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAAE 121 G+PLLILLF VYFGL V G L LVAA +++MVY SA+LG+IWRGCVEA+PR Q EAAE Sbjct: 61 GLPLLILLFCVYFGLGVIGVELSPLVAAAISLMVYCSAFLGEIWRGCVEAVPRTQGEAAE 120 Query: 122 CLSLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSIF 181 CL+L+RWQ L VI+PQA R+++PPTVGF VQV+K TSLASV+GF+ELTRA Q+INNSIF Sbjct: 121 CLALSRWQALVDVILPQAARIAVPPTVGFFVQVLKSTSLASVVGFVELTRASQLINNSIF 180 Query: 182 QPFLIFSLVGAFYFVLCYPLSRWSESMENKLNVSNR 217 QPFL+F L GA YF LCYPLSRWS +E KL+V R Sbjct: 181 QPFLVFGLAGALYFALCYPLSRWSRRLERKLHVGRR 216 >ref|YP_003962780.1| polar amino acid ABC transporter inner membrane protein [Ketogulonicigenium vulgare Y25] gb|ADO41480.1| polar amino acid ABC transporter, inner membrane subunit [Ketogulonicigenium vulgare Y25] gb|AEM42334.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family protein [Ketogulonigenium vulgarum WSH-001] Length = 216 Score = 265 bits (676), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 129/214 (60%), Positives = 167/214 (78%) Query: 4 SFSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECIQGI 63 +F GHF+YL+ +WWT++LS LA LGSI GF VML RIS R+WL + +++ IQG Sbjct: 3 TFGTGHFIYLLNGLWWTIILSALAMSLGSIAGFIVMLGRISRRKWLVRLSGTWVQIIQGT 62 Query: 64 PLLILLFIVYFGLSVYGFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAAECL 123 PLLI +FI+YFGL V G ++PAL AA +A M+Y SAYLG+IWRGCV+++ + Q+EAAE + Sbjct: 63 PLLIQMFIIYFGLGVVGISVPALAAAAIATMIYASAYLGEIWRGCVQSIAKTQFEAAESM 122 Query: 124 SLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSIFQP 183 LTRWQ LR VI+PQA R++ PPTVGF VQ+IK TSLASV+GF+ELTRA Q+INNS+F+P Sbjct: 123 GLTRWQALRDVILPQAMRIATPPTVGFTVQLIKNTSLASVVGFLELTRAAQVINNSLFEP 182 Query: 184 FLIFSLVGAFYFVLCYPLSRWSESMENKLNVSNR 217 FL+F + A YF +CYPLS WS ++E KLNV R Sbjct: 183 FLVFGIAAALYFAVCYPLSLWSRNLERKLNVGRR 216 >ref|YP_001525533.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF88615.1| amino acid ABC transporter, permease protein [Azorhizobium caulinodans ORS 571] Length = 219 Score = 263 bits (673), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 124/216 (57%), Positives = 165/216 (76%) Query: 1 MIGSFSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECI 60 ++ SF F++L++S+ WTLVL+ +A LG I G + LAR+SP L + T YI+ I Sbjct: 2 LVRSFGLNDFIFLLESLRWTLVLTAIALTLGGIAGLFIALARVSPLMPLRLATAAYIQII 61 Query: 61 QGIPLLILLFIVYFGLSVYGFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAA 120 QG P+L++LF+ Y+GLS+ GF LPALVAA ++M +Y S YLGDIWRGC+EA+P+PQWEA+ Sbjct: 62 QGSPVLMILFLSYYGLSLIGFQLPALVAASISMSIYVSGYLGDIWRGCIEAVPKPQWEAS 121 Query: 121 ECLSLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSI 180 ECL +TR Q R +I+PQA R++LPPT GF VQV+K TS+ S+IGF+EL+RAGQ+INNS Sbjct: 122 ECLGMTRVQQFRHIILPQALRIALPPTTGFAVQVVKNTSITSIIGFVELSRAGQLINNST 181 Query: 181 FQPFLIFSLVGAFYFVLCYPLSRWSESMENKLNVSN 216 FQPF +F V A YFV+CYPLSR S +E KLNV + Sbjct: 182 FQPFRVFLTVAAIYFVICYPLSRLSGWLERKLNVGS 217 >ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63012.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 117/216 (54%), Positives = 168/216 (77%) Query: 1 MIGSFSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECI 60 M+ FS+ +F++L+++ WTL+LS LAF+ G I GF V L R S L + + VYI+ I Sbjct: 1 MLAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 Query: 61 QGIPLLILLFIVYFGLSVYGFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAA 120 QG P+LILLF+ ++GL+++G+ LP +VAA +AM +Y+SAYLG+IWRGC+EA+P PQWEA+ Sbjct: 61 QGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 Query: 121 ECLSLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSI 180 L++TRWQ LR VI+PQA R+SLPPTVGFLVQ++K TS+AS+IG +EL +AG++++N+ Sbjct: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 Query: 181 FQPFLIFSLVGAFYFVLCYPLSRWSESMENKLNVSN 216 FQPFL+F +V YFV CYPLSR++ ++E K + Sbjct: 181 FQPFLVFPIVAGIYFVFCYPLSRFAFALERKYHAHR 216