BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0086.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777978.1| amino acid ABC transporter periplasmic prote... 300 7e-80 ref|YP_001768632.1| extracellular solute-binding protein [Methyl... 207 7e-52 ref|YP_003962782.1| extracellular solute-binding protein [Ketogu... 193 1e-47 ref|YP_982301.1| extracellular solute-binding protein [Polaromon... 192 2e-47 gb|EGP48471.1| amino acid ABC transporter/signal transduction sy... 174 4e-42 >ref|YP_003777978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ66070.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 300 bits (767), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 140/182 (76%), Positives = 161/182 (88%) Query: 1 VPVTNAARIPTLQANRADVVIADLSITPERAKVVDFSVPYAVITIIVGGPKNIQIKDYND 60 +PV NAAR+PTLQANRAD+V+ LSITPER KV+DFS PYAVI++I+G PK++ IKDY D Sbjct: 82 IPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPKSMVIKDYAD 141 Query: 61 LNGKRIGLTRATVNDTLTTAQAKGAEIVRYEDDATLITSMVTGQVEIFSSTPSNLGEMIK 120 LNGKRIG+TRAT NDTLTT AKGAEI+RYEDDATLITSMVTGQV++FSSTPSNL EM K Sbjct: 142 LNGKRIGVTRATPNDTLTTQNAKGAEIMRYEDDATLITSMVTGQVDVFSSTPSNLQEMQK 201 Query: 121 RAPGKNLELKFAQKDFDLGIAFNQNQPRLKEWINNWVLTNHRNGKLDAIYVKFHGRHLPA 180 +APGKNLE+KF QK FDLGIA N+NQPRLKEWI+ WV TN +NGKL+AIY K+HGR LPA Sbjct: 202 KAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLNAIYKKYHGRDLPA 261 Query: 181 AV 182 AV Sbjct: 262 AV 263 >ref|YP_001768632.1| extracellular solute-binding protein [Methylobacterium sp. 4-46] gb|ACA16198.1| extracellular solute-binding protein family 3 [Methylobacterium sp. 4-46] Length = 266 Score = 207 bits (526), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 94/180 (52%), Positives = 134/180 (74%) Query: 1 VPVTNAARIPTLQANRADVVIADLSITPERAKVVDFSVPYAVITIIVGGPKNIQIKDYND 60 + +TNAAR+PT+Q +AD+++A L++TPER KV+DF+VPYA + I+V G + +K Y D Sbjct: 81 IQITNAARVPTIQTRKADILVASLAVTPERKKVIDFTVPYATLNIVVAGVPALAVKGYPD 140 Query: 61 LNGKRIGLTRATVNDTLTTAQAKGAEIVRYEDDATLITSMVTGQVEIFSSTPSNLGEMIK 120 + GKRIG+TRATVND L T AKGAEIVR+EDDATLIT+ V+GQV++ S+ + + M + Sbjct: 141 IVGKRIGVTRATVNDMLVTQNAKGAEIVRFEDDATLITAAVSGQVDLVSTQEAVVAVMNE 200 Query: 121 RAPGKNLELKFAQKDFDLGIAFNQNQPRLKEWINNWVLTNHRNGKLDAIYVKFHGRHLPA 180 + + E KF Q + +LGIA Q + RLK+W+N+WV +N +G+L A++ KFHGR LPA Sbjct: 201 KRADRPFETKFVQSELNLGIALPQGEDRLKDWLNDWVRSNMASGRLTALFRKFHGRDLPA 260 >ref|YP_003962782.1| extracellular solute-binding protein [Ketogulonicigenium vulgare Y25] gb|ADO41482.1| extracellular solute-binding protein [Ketogulonicigenium vulgare Y25] gb|AEM42336.1| Amino acid ABC transporter [Ketogulonigenium vulgarum WSH-001] Length = 263 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 89/179 (49%), Positives = 125/179 (69%) Query: 1 VPVTNAARIPTLQANRADVVIADLSITPERAKVVDFSVPYAVITIIVGGPKNIQIKDYND 60 V +TNAAR+PT+Q ++AD+V++ L IT ER + +DFSVPYA + ++V P +I I DY D Sbjct: 79 VEITNAARVPTIQTDKADLVVSALGITDERRQAIDFSVPYATLALVVAAPADIDISDYAD 138 Query: 61 LNGKRIGLTRATVNDTLTTAQAKGAEIVRYEDDATLITSMVTGQVEIFSSTPSNLGEMIK 120 L GKRI LTRAT ND TA GAEI+R+EDDATLITS+++GQV+I SS + +G + + Sbjct: 139 LTGKRIALTRATTNDQDITANTTGAEILRFEDDATLITSVISGQVDIISSQSAVIGGINE 198 Query: 121 RAPGKNLELKFAQKDFDLGIAFNQNQPRLKEWINNWVLTNHRNGKLDAIYVKFHGRHLP 179 R G LE+KF Q++ +LGI + P L W++ WV+TN NG+L ++ + R LP Sbjct: 199 RRRGGPLEIKFIQRETNLGIGLAKGNPELLAWVDEWVVTNFDNGRLREVFTTYQHRDLP 257 >ref|YP_982301.1| extracellular solute-binding protein [Polaromonas naphthalenivorans CJ2] gb|ABM37380.1| amino acid ABC transporter substrate-binding protein, PAAT family [Polaromonas naphthalenivorans CJ2] Length = 255 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 88/175 (50%), Positives = 124/175 (70%) Query: 1 VPVTNAARIPTLQANRADVVIADLSITPERAKVVDFSVPYAVITIIVGGPKNIQIKDYND 60 V T+ RIP LQ +AD+V+A LS+TPER KVVDFS PYA I +V GPK + IK ++D Sbjct: 80 VQTTSPNRIPFLQTGKADIVVASLSVTPEREKVVDFSTPYAQILAVVAGPKAVSIKGFDD 139 Query: 61 LNGKRIGLTRATVNDTLTTAQAKGAEIVRYEDDATLITSMVTGQVEIFSSTPSNLGEMIK 120 L GKR+ TR + ND + T AKGA++VRY+DDATL+T+ V+GQ +I +++P+ + ++ Sbjct: 140 LQGKRVATTRGSNNDRVATLGAKGAQMVRYDDDATLVTAAVSGQADIIATSPAIVNAVLG 199 Query: 121 RAPGKNLELKFAQKDFDLGIAFNQNQPRLKEWINNWVLTNHRNGKLDAIYVKFHG 175 ++P K+L KF + LGI +N+P LK W+N+WV N +NGKL AIY K+HG Sbjct: 200 KSPQKDLVTKFVMQTVPLGIGMRKNEPELKAWLNDWVTKNTQNGKLTAIYKKYHG 254 >gb|EGP48471.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Achromobacter xylosoxidans AXX-A] Length = 272 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 124/185 (67%), Gaps = 1/185 (0%) Query: 1 VPVTNAARIPTLQANRADVVIADLSITPERAKVVDFSVPYAVITIIVGGPKNIQIKDYND 60 VP T A R+P LQ +AD+VI+ +S+TPER KV+DFS PYA I +VG PK +++ D Sbjct: 85 VPTTGANRVPFLQTGKADIVISSMSVTPERQKVIDFSTPYAAILAVVGAPKGMKLISAAD 144 Query: 61 LNGKRIGLTRATVNDT-LTTAQAKGAEIVRYEDDATLITSMVTGQVEIFSSTPSNLGEMI 119 L+ K++ TR T NDT LT K A+I+R++DDAT IT++V+GQ +IF++ P+ L + Sbjct: 145 LSNKKVIATRGTTNDTELTKIAPKDAQIIRFDDDATSITAVVSGQADIFATAPALLRTIN 204 Query: 120 KRAPGKNLELKFAQKDFDLGIAFNQNQPRLKEWINNWVLTNHRNGKLDAIYVKFHGRHLP 179 ++AP K +E KF + L I +N+P LK+ ++ WV N +NG+L+ IY +FHG LP Sbjct: 205 EKAPSKQMESKFVMRLNMLAIGLRKNEPALKDKLDGWVRANLKNGELNTIYKQFHGVDLP 264 Query: 180 AAVAK 184 V K Sbjct: 265 QEVTK 269