BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0074.p (399 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775677.1| Ku domain-containing protein [Herbaspirillum... 408 e-111 ref|YP_003052337.1| Ku protein [Methylovorus glucosetrophus SIP3... 304 2e-80 ref|ZP_02883526.1| Ku protein [Burkholderia graminis C4D1M] >gi|... 295 1e-77 ref|YP_299274.1| hypothetical protein Reut_B5082 [Ralstonia eutr... 295 1e-77 ref|YP_004152863.1| ku protein [Variovorax paradoxus EPS] >gi|31... 293 3e-77 >ref|YP_003775677.1| Ku domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63769.1| Ku domain containing protein [Herbaspirillum seropedicae SmR1] Length = 349 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/272 (70%), Positives = 232/272 (85%), Gaps = 1/272 (0%) Query: 1 MRRALWKGAISFGLINIPVELFTAEKHDELDFTMLDKRDLSPVGYKRISKKTGKEVVWDN 60 MRRALWKGAISFGLINIPVEL+TAEKHDELDFT+LD+RDLSPVGYKR +KK+G+EV W+N Sbjct: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60 Query: 61 IVKGYEYEDGKYVLLSDEDLRRANVEATQTIDIESFIDATQIPITYYEQPYYLAPLKSGA 120 I+KGY+YE+GKYVL+SDEDLRRANVEATQ+IDI+SF++ Q+PI YYEQPY+LAP K G Sbjct: 61 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 Query: 121 KAYALLRETLRKSGKIALARIVIRTRQHIAALTPFDDIINLITLRYPAELRAPDDLPVPD 180 KAYALLRETL S K+A+A+IVIRTRQH+AAL P D++ LITLRYP+ELRAPDDLPVP Sbjct: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180 Query: 181 ANPKKAGLSAKEVEMAQSLVESMSGDWDPESLRDTYRDDILALVQKKIRSRQTHEIAEPE 240 KKA ++ +EVEMA++LVE MS W+PE DTYRDD+LAL+QKK +SRQTHE+AEP+ Sbjct: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKTKSRQTHEVAEPD 240 Query: 241 PEDDGKPRSSAKVIDLMALLKQSIDGKGKRPA 272 S AKV+DLMALLK S++G+G+ A Sbjct: 241 EAAAPAS-SGAKVVDLMALLKSSLEGRGRSSA 271 >ref|YP_003052337.1| Ku protein [Methylovorus glucosetrophus SIP3-4] gb|ACT51810.1| Ku protein [Methylovorus glucosetrophus SIP3-4] Length = 293 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 153/295 (51%), Positives = 209/295 (70%), Gaps = 9/295 (3%) Query: 1 MRRALWKGAISFGLINIPVELFTAEKHDELDFTMLDKRDLSPVGYKRISKKTGKEVVWDN 60 M RALWKGAISFGL++IPVEL+ + +D MLD+RD SPVGYKR +K TGKE+ ++ Sbjct: 1 MPRALWKGAISFGLVHIPVELYPSHNAPGIDLDMLDRRDFSPVGYKRYNKTTGKEIHTED 60 Query: 61 IVKGYEYEDGKYVLLSDEDLRRANVEATQTIDIESFIDATQIPITYYEQPYYLAPLKSGA 120 IVKGY+YE G+YV+L+D ++R+AN EATQ IDI++F+ +I Y+EQPYYL P K G Sbjct: 61 IVKGYQYEKGEYVVLTDAEIRQANKEATQAIDIQAFVKVDEISPLYFEQPYYLKPAKGGE 120 Query: 121 KAYALLRETLRKSGKIALARIVIRTRQHIAALTPFDDIINLITLRYPAELRAPDDLPVPD 180 K YALLRETLR + +I +A+IV+RT+QH+AAL D +I L LRY ++R P++L +P Sbjct: 121 KVYALLRETLRTTDRIGIAQIVMRTKQHLAALMVVDQVIVLNMLRYAEDIRPPEELGLPG 180 Query: 181 ANPKKAGLSAKEVEMAQSLVESMSGDWDPESLRDTYRDDILALVQKKIRSRQTHEIAEPE 240 + K +S KE++MA +LVE M+ WDPE D +R+DI+ALV+KKIR++QTH + EPE Sbjct: 181 EDAPKVRVSDKEIKMAHALVEDMTEPWDPEQFHDRFREDIMALVKKKIRNKQTHALMEPE 240 Query: 241 PEDDGKPRSSAKVIDLMALLKQSIDGKGKRPA-------AKPAATPARRTKAAAR 288 E S++ ++DLMALLK+SI G+ +PA A+ A P R KA R Sbjct: 241 DETPADT-STSNIVDLMALLKESI-GRRMKPAKESSGNKAEKAEEPPARHKATRR 293 >ref|ZP_02883526.1| Ku protein [Burkholderia graminis C4D1M] gb|EDT10958.1| Ku protein [Burkholderia graminis C4D1M] Length = 335 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 157/344 (45%), Positives = 226/344 (65%), Gaps = 12/344 (3%) Query: 1 MRRALWKGAISFGLINIPVELFTAEKHDELDFTMLDKRDLSPVGYKRISKKTGKEVVWDN 60 M +WKGAISFGL+++PV+L+ A K +++ F +LDKR + PVGYK+I+K+TGK+V DN Sbjct: 1 MAHMIWKGAISFGLVHVPVQLYPATKSEKVGFNLLDKRTIDPVGYKQINKRTGKDVTRDN 60 Query: 61 IVKGYEYEDGKYVLLSDEDLRRANVEATQTIDIESFIDATQIPITYYEQPYYLAPLKSGA 120 IV+G+EYE KYV+LSDE++R AN E+TQT+DI +F+DA I Y + PY+L P + G Sbjct: 61 IVRGFEYEKDKYVVLSDEEIRAANPESTQTVDILAFVDAPDISFLYLDTPYFLTPDRKGE 120 Query: 121 KAYALLRETLRKSGKIALARIVIRTRQHIAALTPFDDIINLITLRYPAELRAPDDLPVPD 180 K YALLRE ++ SGK+ +A +V+ +QH+AAL P ++ L TLR+ E+R D+ +P Sbjct: 121 KVYALLREAMKSSGKVGVASVVLHNKQHLAALIPVGPVLALNTLRWADEVRDFDEFKLPA 180 Query: 181 ANPKKAGLSAKEVEMAQSLVESMSGDWDPESLRDTYRDDILALVQKKIRSRQTHEIAEPE 240 K AG+SA+E++MAQ L++ MS WDP DT+RDDI+ALV++K+R +T EI + E Sbjct: 181 EGAKAAGVSARELDMAQKLIDDMSDTWDPSKYHDTFRDDIMALVERKVREGKTEEITDIE 240 Query: 241 -PEDDGKPRSSAKVIDLMALLKQSIDGKGKRPAAKPAATPARRTKAAARPAAAKNRSRTA 299 P + R SA ++DL LLK+S+ G+GK +KPA+ R +AA AA + Sbjct: 241 APRE---SRQSADILDLSDLLKRSL-GRGK---SKPAS--GSRKRAADDEAADETSDADE 291 Query: 300 PPRPAAAKNRSRTAPPPRAQIRCG--GCAPASSTGAARTSKASC 341 AA +SR+ RA G G A A ST A+R +A+ Sbjct: 292 DSGSTAAPKKSRSTRTSRASTSGGKSGRAAAKSTTASRKRRAAA 335 >ref|YP_299274.1| hypothetical protein Reut_B5082 [Ralstonia eutropha JMP134] gb|AAZ64430.1| Ku [Ralstonia eutropha JMP134] Length = 334 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 165/340 (48%), Positives = 228/340 (67%), Gaps = 7/340 (2%) Query: 1 MRRALWKGAISFGLINIPVELFTAEKHDELDFTMLDKRDLSPVGYKRISKKTGKEVVWDN 60 M R +WKGAI+FGL+NIPV L A + LD +LD RD++PVGY+RI+K TGK + ++ Sbjct: 1 MSRIIWKGAITFGLVNIPVVLKPASRSQTLDLDLLDARDMAPVGYQRINKSTGKPIPKEH 60 Query: 61 IVKGYEYEDGKYVLLSDEDLRRANVEATQTIDIESFIDATQIPITYYEQPYYLAPLKSGA 120 IVKGY+YE +YV+LSDED R+ANVEATQT+DI SF+ A IP Y++ PYYL P K G Sbjct: 61 IVKGYQYEKDEYVVLSDEDFRQANVEATQTVDIVSFVQADDIPPYYFDTPYYLEPDKRGE 120 Query: 121 KAYALLRETLRKSGKIALARIVIRTRQHIAALTPFDDIINLITLRYPAELRAPDDLPVPD 180 + YALLRET+R++G+ ALA +V+R RQH+AA+ D+ + L T+R+ E+ +L +P Sbjct: 121 RGYALLRETMRRTGRAALALVVLRNRQHLAAMLVDDNALVLNTMRFADEVLPISELKLPK 180 Query: 181 ANPKKA-GLSAKEVEMAQSLVESMSGDWDPESLRDTYRDDILALVQKKIRSRQTHEIAEP 239 A+ KA G A+E+EMA LVE MS +W PE RDTYR D++A +++KI S QTHE+ P Sbjct: 181 ASSGKATGAHAREIEMAVKLVEDMSEEWAPEQYRDTYRHDLMARIEQKIESGQTHELT-P 239 Query: 240 EPEDDGKPRSSAKVIDLMALLKQSIDGKGKRPAAKPAATPARRTKAAARPAAAKNRSRTA 299 E++ PR SAKVID++ALLKQS+D +GKR ++ P + + A R A + +R Sbjct: 240 AAEEEEAPRKSAKVIDMVALLKQSLDTRGKRGGRDKSSEP--KEEDAPRKTARRAPARKH 297 Query: 300 PPRPAAAKNRSRTAPPPRAQIRCGGCAPASSTGAARTSKA 339 P AA +R A RA GG + ++S AR +A Sbjct: 298 APAKRAAGSR---ASAKRASHSSGGKSTSASRTTARRKQA 334 >ref|YP_004152863.1| ku protein [Variovorax paradoxus EPS] gb|ADU34752.1| Ku protein [Variovorax paradoxus EPS] Length = 331 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 142/275 (51%), Positives = 202/275 (73%), Gaps = 7/275 (2%) Query: 3 RALWKGAISFGLINIPVELFTAEKHDELDFTMLDKRDLSPVGYKRISKKTGKEVVWDNIV 62 R LWKGAISFGL++IPV L++A +DF LDKR + PVGYKRI+KKTGKE+ +NIV Sbjct: 11 RVLWKGAISFGLVHIPVALYSATTDHGIDFDWLDKRSMDPVGYKRINKKTGKEITRENIV 70 Query: 63 KGYEYEDGKYVLLSDEDLRRANVEATQTIDIESFIDATQIPITYYEQPYYLAPLKSGAKA 122 KG EYEDG+YV+LSD+++ A + TQTI+IE+F+ A IP Y E+PYY+AP+ GAK Sbjct: 71 KGVEYEDGEYVVLSDKEIAAAYPKTTQTIEIETFVPANGIPFVYLERPYYVAPINKGAKV 130 Query: 123 YALLRETLRKSGKIALARIVIRTRQHIAALTPFDDIINLITLRYPAELRAPDDLPVPDAN 182 YALLRETL++S ++ +AR+VI+T+QH+A L P + L LR+ A++R +DLP+P + Sbjct: 131 YALLRETLQRSERVGVARVVIQTKQHLAVLVPVGPGLVLNLLRWGADIRPWNDLPLPSED 190 Query: 183 PKKAGLSAKEVEMAQSLVESMSGDWDPESLRDTYRDDILALVQKKIRSRQTHEIAEPEPE 242 KKAGL+ +E++MAQ LVE MSG+WDP +D ++D+IL LV +K+++ QT + +P+PE Sbjct: 191 AKKAGLTDRELKMAQQLVEDMSGEWDPMEYKDEFKDEILRLVDRKVKAGQTETVTQPDPE 250 Query: 243 D----DGKPRSSAKVIDLMALLKQSIDGKGKRPAA 273 + +GK AK+IDL LL++S+ KG + A Sbjct: 251 EGQSTEGK---GAKIIDLTELLQRSLRSKGGKTKA 282