BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0070.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004704598.1| GntR family transcriptional regulator [Pseud... 236 1e-60 ref|YP_004377847.1| GntR family transcriptional regulator [Pseud... 236 2e-60 ref|ZP_08141086.1| GntR family transcriptional regulator [Pseudo... 235 4e-60 ref|YP_001671608.1| transcriptional regulator [Pseudomonas putid... 232 2e-59 gb|ADR57722.1| GntR family transcriptional regulator [Pseudomona... 232 3e-59 >ref|YP_004704598.1| GntR family transcriptional regulator [Pseudomonas putida S16] gb|AEJ15718.1| GntR family transcriptional regulator [Pseudomonas putida S16] Length = 508 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 124/232 (53%), Positives = 150/232 (64%), Gaps = 37/232 (15%) Query: 2 LPPP--GKPRTFRIGVPALDLFPGDVWARLQADFWRRGTENRIGYSDPAGDPQLREMLAG 59 LPPP G PR FR+G+PA DLFP DVWA+LQA FWR ++GY DPAG+P LRE++A Sbjct: 136 LPPPRSGAPRAFRVGIPAFDLFPFDVWAKLQAGFWRNPAPAQLGYGDPAGEPLLRELIAA 195 Query: 60 YLRNSRGLVCDPDQIIITAGTQQALFMCAQLLLNPGDTAAMENPGYPRAASALXMEN--- 116 YLR SRGL C +QI+IT+G QQA+ +CAQLLL PGD A+ENPGY A A + Sbjct: 196 YLRRSRGLSCTAEQIVITSGAQQAISLCAQLLLQPGDGVAVENPGYRAAGHAFALAGGRL 255 Query: 117 -----------------------------PGYPRAAS---ARRLDLLAWAEANQSYILED 144 YP + ARRL+LLAWAE ++ +I+ED Sbjct: 256 CGVPVDEDGMDCRRLGQLTDCRLAYVTPAHQYPTGVTMSLARRLELLAWAERSEGWIIED 315 Query: 145 DYDGEYRYSGTPLALLASLDRSGRVLHMGTFSKIAFPGLRLGYIVAPPAXAR 196 DYDGEYRYSG PLA LA+LDR GRVL++GTF KIAFP LRLGY+V PP A+ Sbjct: 316 DYDGEYRYSGAPLAPLAALDRHGRVLYVGTFGKIAFPALRLGYLVLPPQLAQ 367 >ref|YP_004377847.1| GntR family transcriptional regulator [Pseudomonas mendocina NK-01] gb|AEB56095.1| GntR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 488 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 127/229 (55%), Positives = 149/229 (65%), Gaps = 35/229 (15%) Query: 2 LPPPGKPRTFRIGVPALDLFPGDVWARLQADFWRRGTENRIGYSDPAGDPQLREMLAGYL 61 +P G PR FRIGVPA DLFP + WARLQA FWRR + R+GY DPAGD LRE++A YL Sbjct: 115 MPIAGAPRAFRIGVPAFDLFPFETWARLQARFWRRPSPARLGYGDPAGDRTLRELVAAYL 174 Query: 62 RNSRGLVCDPDQIIITAGTQQALFMCAQLLLNPGDTAAMENPGY---------------- 105 RN RGL CDP QI+IT G QQA+ +CAQLL+ PGD A+ENPGY Sbjct: 175 RNGRGLACDPRQIVITCGAQQAISLCAQLLVRPGDRVAVENPGYRAAAHAFAAAGADLRG 234 Query: 106 ---------PRAASAL-------XMENPGYPRAAS---ARRLDLLAWAEANQSYILEDDY 146 +A SA+ + YP + ARRL+LL WAE +I+EDDY Sbjct: 235 VPLDGEGLDTKALSAIEGCRLAYVTPSHQYPTGVTLSLARRLELLEWAERQDGWIVEDDY 294 Query: 147 DGEYRYSGTPLALLASLDRSGRVLHMGTFSKIAFPGLRLGYIVAPPAXA 195 DGEYRYSGTPLA LA+LDR GRVL++GTF KIAFP LRLGY+V PPA A Sbjct: 295 DGEYRYSGTPLAPLAALDRQGRVLYVGTFCKIAFPALRLGYLVLPPALA 343 >ref|ZP_08141086.1| GntR family transcriptional regulator [Pseudomonas sp. TJI-51] gb|EGB97623.1| GntR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 510 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 126/233 (54%), Positives = 149/233 (63%), Gaps = 37/233 (15%) Query: 2 LPPP--GKPRTFRIGVPALDLFPGDVWARLQADFWRRGTENRIGYSDPAGDPQLREMLAG 59 LPPP G PR FR+G+PA DLFP DVWA+LQA FWR ++GY DPAG+P LRE++A Sbjct: 137 LPPPKQGAPRAFRLGIPAFDLFPFDVWAKLQAGFWRNPAPAQLGYGDPAGEPALRELIAA 196 Query: 60 YLRNSRGLVCDPDQIIITAGTQQALFMCAQLLLNPGDTAAMENPGYPRAASALXM---EN 116 YLR SRGL C +QI+IT+G QQA+ +CAQLLL PGD A+ENPGY AA A M E Sbjct: 197 YLRRSRGLTCTAEQIVITSGAQQAISLCAQLLLQPGDRVAVENPGYRAAAHAFSMAGAEV 256 Query: 117 PG-----------------------------YPRAASA---RRLDLLAWAEANQSYILED 144 G YP + RRL LL WAE N +I+ED Sbjct: 257 AGVPVDEEGMECARLGRLPDCRLAYVTPAHQYPTGVTMSLPRRLALLGWAERNDGWIIED 316 Query: 145 DYDGEYRYSGTPLALLASLDRSGRVLHMGTFSKIAFPGLRLGYIVAPPAXARC 197 DYDGEYRYSG PLA LA+LDR+GRVL++GTF KIAFP LRLGY+V P A+ Sbjct: 317 DYDGEYRYSGAPLAPLAALDRAGRVLYVGTFGKIAFPALRLGYLVLPAQLAQA 369 >ref|YP_001671608.1| transcriptional regulator [Pseudomonas putida GB-1] gb|ABZ01273.1| transcriptional regulator, GntR family with aminotransferase domain [Pseudomonas putida GB-1] Length = 509 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 121/230 (52%), Positives = 148/230 (64%), Gaps = 35/230 (15%) Query: 3 PPPGKPRTFRIGVPALDLFPGDVWARLQADFWRRGTENRIGYSDPAGDPQLREMLAGYLR 62 P G PR FR+G+PA DLFP DVWA+LQA FWR + ++GY DPAG+P LRE++A YLR Sbjct: 140 PRSGAPRAFRVGIPAFDLFPFDVWAKLQAGFWRNPSPEQLGYGDPAGEPALRELIAAYLR 199 Query: 63 NSRGLVCDPDQIIITAGTQQALFMCAQLLLNPGDTAAMENPGYPRAASALXM-------- 114 SRGL C +QI+IT+G QQA+ +CAQLLL PGD A+ENPGY A A + Sbjct: 200 RSRGLSCTAEQIVITSGAQQAISLCAQLLLQPGDGVAVENPGYRAAGHAFTLAGGRVFGV 259 Query: 115 -------------ENPG-----------YPRAAS---ARRLDLLAWAEANQSYILEDDYD 147 + P YP + ARRL LLAWAE + +++EDDYD Sbjct: 260 PVDEDGMDCGRLEQRPDCRLAYVTPAHQYPTGVTMSLARRLALLAWAERSDGWVIEDDYD 319 Query: 148 GEYRYSGTPLALLASLDRSGRVLHMGTFSKIAFPGLRLGYIVAPPAXARC 197 GEYRYSG PLA LA+LDR GRVL++GTF KIAFP LRLGY+V PP A+ Sbjct: 320 GEYRYSGAPLAPLAALDRHGRVLYVGTFGKIAFPALRLGYLVLPPQLAQA 369 >gb|ADR57722.1| GntR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 509 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 122/227 (53%), Positives = 147/227 (64%), Gaps = 37/227 (16%) Query: 2 LPPP--GKPRTFRIGVPALDLFPGDVWARLQADFWRRGTENRIGYSDPAGDPQLREMLAG 59 LPPP G PR FR+G+PA DLFP DVWA+LQA FWR + ++GY DPAG+P LR+++A Sbjct: 137 LPPPRIGAPRAFRVGIPAFDLFPFDVWAKLQAGFWRNPSPAQLGYGDPAGEPALRDLIAA 196 Query: 60 YLRNSRGLVCDPDQIIITAGTQQALFMCAQLLLNPGDTAAMENPGYPRAASALXMEN--- 116 YLR SRGL C +QI+IT+G QQA+ +CAQLLL PGD A+ENPGY AA A + Sbjct: 197 YLRRSRGLSCTAEQIVITSGAQQAISLCAQLLLQPGDGVAVENPGYRAAAHAFTLAGGRV 256 Query: 117 -----------------------------PGYPRAAS---ARRLDLLAWAEANQSYILED 144 YP + ARRL LLAWAE + +I+ED Sbjct: 257 FGVPVNEDGLDCSRLEQLTDCRLTYVTPAHQYPTGVTMSLARRLALLAWAERSDGWIIED 316 Query: 145 DYDGEYRYSGTPLALLASLDRSGRVLHMGTFSKIAFPGLRLGYIVAP 191 DYDGEYRYSG PLA LA+LDR GRVL++GTF KIAFP LRLGY+V P Sbjct: 317 DYDGEYRYSGAPLAPLAALDRHGRVLYVGTFGKIAFPALRLGYLVLP 363