BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0064.p         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776080.1| D-3-phosphoglycerate dehydrogenase [Herbaspi...   144   4e-33
ref|YP_842073.1| lactate dehydrogenase or related dehydrogenase ...   142   2e-32
ref|YP_004682648.1| glyoxylate reductase GyaR [Cupriavidus necat...   140   8e-32
ref|YP_987310.1| D-isomer specific 2-hydroxyacid dehydrogenase [...   138   2e-31
ref|YP_002553891.1| d-isomer specific 2-hydroxyacid dehydrogenas...   138   2e-31

>ref|YP_003776080.1| D-3-phosphoglycerate dehydrogenase [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64172.1| D-3-phosphoglycerate dehydrogenase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 310

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/100 (69%), Positives = 78/100 (78%)

Query: 10  GRPXRHLVGARELQALGPKGFLVNISRGSVVDTAALAAALGKGELGGAGLDVYESEPQPP 69
           G   RHL+ AR L+ LGP+G+LVNI RGS+VDT AL AAL  G L GAGLDVYE EPQPP
Sbjct: 204 GAQTRHLINARVLEELGPQGYLVNIGRGSIVDTDALGAALSSGRLAGAGLDVYEGEPQPP 263

Query: 70  RELLEFKNVVLTPHMAGWSPEAITASITKFLRNAEAHFAA 109
             L+   NVVLTPH+AGWSPEAI AS+T+FLRN E HFAA
Sbjct: 264 AALIALPNVVLTPHIAGWSPEAIRASVTQFLRNCEEHFAA 303


>ref|YP_842073.1| lactate dehydrogenase or related dehydrogenase [Ralstonia eutropha
           H16]
 emb|CAJ97343.1| lactate dehydrogenase or related dehydrogenase [Ralstonia eutropha
           H16]
          Length = 311

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 80/102 (78%)

Query: 10  GRPXRHLVGARELQALGPKGFLVNISRGSVVDTAALAAALGKGELGGAGLDVYESEPQPP 69
           G   RHLV A  L ALGP GFLVNI+RGSVVDT ALA+AL  G+LGGAGLDVYESEP PP
Sbjct: 204 GAGTRHLVDASVLAALGPAGFLVNIARGSVVDTEALASALRAGKLGGAGLDVYESEPAPP 263

Query: 70  RELLEFKNVVLTPHMAGWSPEAITASITKFLRNAEAHFAAVG 111
             L +  NVVLTPH+AGWSPEAITAS+T+FL NA  HFA  G
Sbjct: 264 VVLFDCPNVVLTPHVAGWSPEAITASVTQFLENARRHFAGEG 305


>ref|YP_004682648.1| glyoxylate reductase GyaR [Cupriavidus necator N-1]
 gb|AEI81416.1| glyoxylate reductase GyaR [Cupriavidus necator N-1]
          Length = 311

 Score =  140 bits (352), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 79/102 (77%)

Query: 10  GRPXRHLVGARELQALGPKGFLVNISRGSVVDTAALAAALGKGELGGAGLDVYESEPQPP 69
           G   RHLV A  L ALGP GFLVNI+RGSVVDT ALA+AL  G+LGGAGLDVYESEP PP
Sbjct: 204 GAGTRHLVDASVLAALGPAGFLVNIARGSVVDTEALASALRAGKLGGAGLDVYESEPAPP 263

Query: 70  RELLEFKNVVLTPHMAGWSPEAITASITKFLRNAEAHFAAVG 111
             L +  NVVLTPH+AGWSPEAITAS+ +FL NA  HFA  G
Sbjct: 264 VVLFDCPNVVLTPHVAGWSPEAITASVMQFLENARRHFAGEG 305


>ref|YP_987310.1| D-isomer specific 2-hydroxyacid dehydrogenase [Acidovorax sp. JS42]
 gb|ABM43234.1| D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein
           [Acidovorax sp. JS42]
          Length = 329

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 80/102 (78%)

Query: 10  GRPXRHLVGARELQALGPKGFLVNISRGSVVDTAALAAALGKGELGGAGLDVYESEPQPP 69
           G   RH V A  LQALGP+G+LVNI+RGSVVDT ALAAAL +  + GAGLDVYESEP PP
Sbjct: 223 GASTRHRVNAEVLQALGPQGYLVNIARGSVVDTQALAAALRERRIAGAGLDVYESEPAPP 282

Query: 70  RELLEFKNVVLTPHMAGWSPEAITASITKFLRNAEAHFAAVG 111
           +EL+   NV+LTPH+AGWSPEA+ AS+ +FL NAE HFA  G
Sbjct: 283 QELVGLDNVLLTPHVAGWSPEAVQASVDRFLANAEGHFAGRG 324


>ref|YP_002553891.1| d-isomer specific 2-hydroxyacid dehydrogenase [Acidovorax ebreus
           TPSY]
 gb|ACM33891.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
           [Acidovorax ebreus TPSY]
          Length = 329

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 80/102 (78%)

Query: 10  GRPXRHLVGARELQALGPKGFLVNISRGSVVDTAALAAALGKGELGGAGLDVYESEPQPP 69
           G   RH V A  LQALGP+G+LVNI+RGSVVDT ALAAAL +  + GAGLDVYESEP PP
Sbjct: 223 GASTRHRVNAEVLQALGPQGYLVNIARGSVVDTQALAAALRERRIAGAGLDVYESEPAPP 282

Query: 70  RELLEFKNVVLTPHMAGWSPEAITASITKFLRNAEAHFAAVG 111
           +EL+   NV+LTPH+AGWSPEA+ AS+ +FL NAE HFA  G
Sbjct: 283 QELVGLDNVLLTPHVAGWSPEAVQASVDRFLANAEGHFAGRG 324