BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0061.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004546623.1| diguanylate cyclase [Desulfotomaculum rumini...   119   2e-25
ref|YP_004752514.1| putative GGDEF domain-containing protein [Co...   112   2e-23
ref|YP_002483899.1| response regulator receiver modulated diguan...   112   3e-23
ref|YP_004353992.1| diguanylate cyclase [Pseudomonas brassicacea...   108   3e-22
ref|ZP_08491810.1| diguanylate cyclase with PAS/PAC and GAF sens...   106   1e-21

>ref|YP_004546623.1| diguanylate cyclase [Desulfotomaculum ruminis DSM 2154]
 gb|AEG61337.1| diguanylate cyclase [Desulfotomaculum ruminis DSM 2154]
          Length = 415

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 75/105 (71%), Gaps = 1/105 (0%)

Query: 1   MNRPGDLSARYGGEEFAILLPNTDLKGAISVAEKICAGVRALNIPH-GKNPTGIVTVSVG 59
           MNRPGDL ARYGGEEFA++LP TDL+GA  VAEK+ AG+ AL IPH G   +  VT+S+G
Sbjct: 303 MNRPGDLVARYGGEEFAVVLPRTDLEGARVVAEKLRAGIEALEIPHQGSQISSYVTISLG 362

Query: 60  VQASVPTKTCNLLDLVSAADKALYTAKARGRNQVCSADDDIPAAF 104
           V A+VPT   +   L+ AAD+ALY AK +GRN+V S D  I A  
Sbjct: 363 VAATVPTGEASPDSLIQAADRALYEAKHQGRNRVHSLDSIITAVL 407


>ref|YP_004752514.1| putative GGDEF domain-containing protein [Collimonas fungivorans
           Ter331]
 gb|AEK61691.1| putative GGDEF domain protein [Collimonas fungivorans Ter331]
          Length = 521

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 73/98 (74%), Gaps = 1/98 (1%)

Query: 2   NRPGDLSARYGGEEFAILLPNTDLKGAISVAEKICAGVRALNIPHGKNPTGIVTVSVGVQ 61
           NRPGDL+ARYGGEE  +LLP+T+L GA++VAEKI   +  L+I H  +  G+VTVS GV 
Sbjct: 422 NRPGDLAARYGGEELVVLLPDTNLAGAVAVAEKIRVAICNLHIEHPSSTFGLVTVSAGVD 481

Query: 62  ASVPTKTCNL-LDLVSAADKALYTAKARGRNQVCSADD 98
           A VP +  N+  +L+ AAD+ALY AK+ GRN+VCS+ D
Sbjct: 482 AFVPVRDDNIPFELIQAADRALYAAKSAGRNRVCSSAD 519


>ref|YP_002483899.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7425]
 gb|ACL45538.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7425]
          Length = 337

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/101 (54%), Positives = 70/101 (69%)

Query: 1   MNRPGDLSARYGGEEFAILLPNTDLKGAISVAEKICAGVRALNIPHGKNPTGIVTVSVGV 60
           + RPGDL +RYGGEEFAI+LPNT   G   VAE I   V++LN+PH ++P GIVT+S+GV
Sbjct: 236 LKRPGDLVSRYGGEEFAIVLPNTSADGTFKVAEAIRQQVQSLNLPHNQSPHGIVTLSLGV 295

Query: 61  QASVPTKTCNLLDLVSAADKALYTAKARGRNQVCSADDDIP 101
            A  P    +   L++ AD+ALY AKARGRNQV    D +P
Sbjct: 296 AALTPIVGFSPDYLIAIADRALYLAKARGRNQVVYLQDIVP 336


>ref|YP_004353992.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gb|AEA68988.1| putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 522

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/98 (55%), Positives = 67/98 (68%), Gaps = 1/98 (1%)

Query: 1   MNRPGDLSARYGGEEFAILLPNTDLKGAISVAEKICAGVRALNIPHGKNPTGIVTVSVGV 60
           + RPGDL+ RYGGEEF +LLPNTD  GA  VA++I   VRA+NI HG +P GIVT+S G+
Sbjct: 421 IKRPGDLAVRYGGEEFTVLLPNTDSTGAAKVAQQILEAVRAMNIEHGDHPLGIVTISAGI 480

Query: 61  QASVPT-KTCNLLDLVSAADKALYTAKARGRNQVCSAD 97
             S P+ +      L+ AAD  LY AK  GRN+ CSAD
Sbjct: 481 TTSQPSGEDVTPAMLIKAADAFLYLAKNTGRNRWCSAD 518


>ref|ZP_08491810.1| diguanylate cyclase with PAS/PAC and GAF sensors [Microcoleus
           vaginatus FGP-2]
 gb|EGK89436.1| diguanylate cyclase with PAS/PAC and GAF sensors [Microcoleus
           vaginatus FGP-2]
          Length = 538

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/100 (51%), Positives = 72/100 (72%), Gaps = 3/100 (3%)

Query: 3   RPGDLSARYGGEEFAILLPNTDLKGAISVAEKICAGVRALNIPHG-KNPTGIVTVSVGVQ 61
           RP DL ARYGGEEFAI+LPNTDL+GA SVA++I A ++AL+IPH   + + +VT+S+G+ 
Sbjct: 432 RPADLVARYGGEEFAIILPNTDLEGASSVAQRIHAAIKALHIPHKTSDVSDVVTISMGIA 491

Query: 62  ASVPTKTCNLLDLVSAADKALYTAKARGRNQ--VCSADDD 99
             +P    +  DL++ AD++LY AK +GRNQ  +C    D
Sbjct: 492 NLIPISELSSADLIAIADRSLYRAKQQGRNQSAICEYSGD 531