BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0058.p (379 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775678.1| ATP-dependent DNA ligase [Herbaspirillum ser... 255 7e-66 ref|YP_003052338.1| DNA ligase D [Methylovorus glucosetrophus SI... 208 2e-51 ref|YP_001668870.1| ATP-dependent DNA ligase [Pseudomonas putida... 174 2e-41 ref|YP_002133197.1| DNA ligase D [Anaeromyxobacter sp. K] >gi|19... 167 2e-39 ref|ZP_08421560.1| DNA ligase D [Desulfovibrio africanus str. Wa... 167 2e-39 >ref|YP_003775678.1| ATP-dependent DNA ligase [Herbaspirillum seropedicae SmR1] gb|ADJ63770.1| ATP-dependent DNA ligase protein [Herbaspirillum seropedicae SmR1] Length = 856 Score = 255 bits (652), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 129/195 (66%), Positives = 149/195 (76%), Gaps = 6/195 (3%) Query: 165 DGEVVAVLDDGSISFEALQ-----DPTGYDGVTLAIYVFDLLWLNGKDLRDTPLLERKRL 219 DGEVVA+ G ISFEALQ D DG+ LA+Y FDLL+LNG DLRD PL +RK L Sbjct: 284 DGEVVALDAQGQISFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLRDIPLRQRKAL 343 Query: 220 LREVVPGVDHSGLIRFSEHVVGDAAEVYRHACLHGMEGTVVKRADAAYAGRRDRSWVKLK 279 LRE++PG D GL+ +SEH+ G AAEV+RHAC HGMEG V+KRADA Y GRRDR W+KLK Sbjct: 344 LRELIPGSDPEGLLLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLK 403 Query: 280 CAMRQEFVIAGYTDPAGSRVGFGALLVGVYDAASGELHYAGRVGTGFDDRKLTQLLKRFK 339 C RQEFVIAGYT+PAG R GFGA+LVGVYD +L YAGRVGTGFDD+ L LLK+F Sbjct: 404 CEHRQEFVIAGYTEPAGQRSGFGAILVGVYDEHE-QLRYAGRVGTGFDDKLLETLLKQFG 462 Query: 340 TLERDQPAFVDPPRG 354 LE+DQPAF +PP G Sbjct: 463 PLEQDQPAFANPPTG 477 >ref|YP_003052338.1| DNA ligase D [Methylovorus glucosetrophus SIP3-4] gb|ACT51811.1| DNA ligase D [Methylovorus glucosetrophus SIP3-4] Length = 870 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 105/190 (55%), Positives = 134/190 (70%), Gaps = 6/190 (3%) Query: 165 DGEVVAVLDDGSISFEALQDP-TGYDGVTLAIYVFDLLWLNGKDLRDTPLLERKRLLREV 223 DGE+VA+ +G ISF+ALQD + TLA +VFDL++LNG DLR PL++RK LL+ V Sbjct: 305 DGELVALQPNGKISFQALQDAMQANNAATLAYFVFDLMYLNGHDLRSQPLIKRKALLKTV 364 Query: 224 VP-GVDHS---GLIRFSEHVVGDAAEVYRHACLHGMEGTVVKRADAAYAGRRDRSWVKLK 279 + D S + FS+H+VG+A EV+ HACLH +EG + KRA++ Y RR W+K+K Sbjct: 365 LQRAADDSQAPSPLHFSDHIVGNAPEVFDHACLHDLEGIIAKRAESPYQPRRTEDWLKIK 424 Query: 280 CAMRQEFVIAGYTDPAGSRVGFGALLVGVYDAASGELHYAGRVGTGFDDRKLTQLLKRFK 339 C +RQEFVI GYTDPAGSR GFGALL+GVYD A G LHYAGRVGTGF + L Q+ K+F Sbjct: 425 CGLRQEFVIGGYTDPAGSRQGFGALLLGVYD-AEGALHYAGRVGTGFTETTLAQVSKQFS 483 Query: 340 TLERDQPAFV 349 L+R F Sbjct: 484 RLQRASSPFT 493 >ref|YP_001668870.1| ATP-dependent DNA ligase [Pseudomonas putida GB-1] gb|ABY98534.1| DNA ligase D [Pseudomonas putida GB-1] Length = 833 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 95/195 (48%), Positives = 124/195 (63%), Gaps = 4/195 (2%) Query: 165 DGEVVAVLDDGSISFEALQDP--TGYDGVTLAIYVFDLLWLNGKDLRDTPLLERKRLLRE 222 DGE+V V ++G+ F+ALQ+ T +D +A Y+FDL +L G+DLR PL R+ LR+ Sbjct: 285 DGEMVVVDENGAADFQALQNAFDTEHD-EGIAYYLFDLPFLGGRDLRQVPLQGRRDTLRQ 343 Query: 223 VVPGVDHSGLIRFSEHVVGDAAEVYRHACLHGMEGTVVKRADAAYAGRRDRSWVKLKCAM 282 ++ G D S +++FS + AC +EG + KR D+ Y+GRR WVKLKC Sbjct: 344 LL-GHDESDVLKFSADFDQPVESLLDSACRLQLEGLIGKRVDSPYSGRRSSDWVKLKCKQ 402 Query: 283 RQEFVIAGYTDPAGSRVGFGALLVGVYDAASGELHYAGRVGTGFDDRKLTQLLKRFKTLE 342 RQEFVI GYTDP GSR GFGALL+ ++D SGEL YAG+VGTGF D L LL R +LE Sbjct: 403 RQEFVIVGYTDPKGSRSGFGALLLALHDNDSGELRYAGKVGTGFSDTTLATLLARLTSLE 462 Query: 343 RDQPAFVDPPRGWSA 357 +PA PP G A Sbjct: 463 TAKPAVARPPTGAEA 477 >ref|YP_002133197.1| DNA ligase D [Anaeromyxobacter sp. K] gb|ACG72068.1| DNA ligase D [Anaeromyxobacter sp. K] Length = 684 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/214 (46%), Positives = 121/214 (56%), Gaps = 8/214 (3%) Query: 163 LRDGEVVAVLDDGSISFEALQDPTGYDGVTLAIYVFDLLWLNGKDLRDTPLLERKRLLRE 222 L DGEV AVL G SF+ALQ +LA +VFDLLWL+G+DL PL ERK LR Sbjct: 101 LLDGEVAAVLPGGRTSFQALQQAFSGGRRSLAYFVFDLLWLDGEDLSGRPLRERKDALRR 160 Query: 223 VVPGVDHSGLIRFSEHVVGDAAEVYRHACLHGMEGTVVKRADAAYAGRRDRSWVKLKCAM 282 ++ ++R++ HV AEV R AC G+EG V KRADA Y R+ +W K KC Sbjct: 161 LLGA--RGAVLRYAPHVEAPGAEVLREACRLGLEGIVSKRADAPYRPGRNTTWTKAKCLA 218 Query: 283 RQEFVIAGYTDPAGSRVGFGALLVGVYDAASGELHYAGRVGTGFDDRKLTQLLKRFKTLE 342 RQE VI G+TDP GSR G GALLVG ++ G L +AG+VGTGF L R LE Sbjct: 219 RQELVIGGFTDPEGSRQGIGALLVGFHE--GGALRFAGKVGTGFTQASARALRARLDRLE 276 Query: 343 RDQPAFVDPPRGW----SATSRPSSISRTACTGW 372 R P F P G + RP ++ A T W Sbjct: 277 RADPPFTPRPPGALGRIAHWVRPELVAEVAFTEW 310 >ref|ZP_08421560.1| DNA ligase D [Desulfovibrio africanus str. Walvis Bay] gb|EGJ48665.1| DNA ligase D [Desulfovibrio africanus str. Walvis Bay] Length = 931 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/216 (45%), Positives = 126/216 (58%), Gaps = 7/216 (3%) Query: 165 DGEVVAVLDDGSISFEALQDP-TGYDGVTLAIYVFDLLWLNGKDLRDTPLLERKRLLREV 223 DGE V + + G F+ALQ+ G G TLA+Y+FD+ + G+DL L+ERK LR V Sbjct: 369 DGEAVVLDERGRPDFQALQNVLKGLSGGTLAMYLFDMPYAEGQDLSGCALIERKEALRSV 428 Query: 224 VPGVDHS-GLIRFSEHVVGDAAEVYRHACLHGMEGTVVKRADAAYAGRRDRSWVKLKCAM 282 + + + +RFS+H+VG V +AC G+EG V KRADA Y RR +W+K KC Sbjct: 429 LGAIGQTPSPLRFSDHIVGKGKLVLENACQMGLEGIVSKRADAHYEPRRAPTWLKSKCGH 488 Query: 283 RQEFVIAGYTDPAGSRVGFGALLVGVYDAASGELHYAGRVGTGFDDRKLTQLLKRFKTLE 342 RQE V+AG+TDP G R GFGALLVGV+D G L YAG+VGTG+D + L L R L Sbjct: 489 RQEVVVAGWTDPKGQRTGFGALLVGVHD-RQGRLIYAGKVGTGYDTQVLGDLSGRLAGLA 547 Query: 343 RDQPAFVDPPRGWSATS----RPSSISRTACTGWRR 374 D AF D R S RP ++ GW R Sbjct: 548 TDDAAFADTHRVGSLADVHWVRPELVAEVDFAGWTR 583