BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0048.p         (198 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_04578261.1| ATP-dependent Clp protease proteolytic subuni...   201   5e-50
ref|YP_001631401.1| ATP-dependent Clp protease proteolytic subun...   199   2e-49
ref|ZP_04576071.1| ATP-dependent Clp protease [Oxalobacter formi...   199   2e-49
gb|EGP42829.1| ATP-dependent Clp protease proteolytic subunit [A...   199   2e-49
gb|EFV85552.1| ATP-dependent Clp protease proteolytic subunit [A...   198   4e-49

>ref|ZP_04578261.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter
           formigenes OXCC13]
 gb|EEO29234.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter
           formigenes OXCC13]
          Length = 207

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 93/117 (79%), Positives = 104/117 (88%)

Query: 3   AFSPRALDLVPTVVEQSGRSERAYDIYSRLLRERIIFLVGPVTDQSANLIVAQLLFLESE 62
           A   R L ++P V+EQSGR ERAYDIYSRLL+ERI+FLVGPV DQ+ANLIVAQLLFLESE
Sbjct: 8   ALDTRMLGMIPMVIEQSGRGERAYDIYSRLLKERIVFLVGPVMDQNANLIVAQLLFLESE 67

Query: 63  DPDKDISLYINSPGGVVYAGLAIYDTMQFIRPQVSTLCTGFAASMGAILLAAGKKXR 119
           +PDKDISLYINSPGG V AG+AIYDTMQFI+PQVSTLCTG AASMGA LLAAG+K +
Sbjct: 68  NPDKDISLYINSPGGSVSAGMAIYDTMQFIKPQVSTLCTGLAASMGAFLLAAGEKGK 124


>ref|YP_001631401.1| ATP-dependent Clp protease proteolytic subunit [Bordetella petrii
           DSM 12804]
 sp|A9IR54.1|CLPP_BORPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 emb|CAP43133.1| ATP-dependent Clp protease proteolytic subunit [Bordetella petrii]
          Length = 217

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 102/115 (88%)

Query: 5   SPRALDLVPTVVEQSGRSERAYDIYSRLLRERIIFLVGPVTDQSANLIVAQLLFLESEDP 64
           +P  L  +P V+EQSGR ERAYDIYSRLLRER+IFLVGPV D +ANLIVAQLLFLESE+P
Sbjct: 18  TPTGLGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDNTANLIVAQLLFLESENP 77

Query: 65  DKDISLYINSPGGVVYAGLAIYDTMQFIRPQVSTLCTGFAASMGAILLAAGKKXR 119
           DKDISLYINSPGG VYAG+AIYDTMQF++P VSTLCTG AASMGA LLAAGKK +
Sbjct: 78  DKDISLYINSPGGSVYAGMAIYDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGK 132


>ref|ZP_04576071.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS]
 gb|EEO27033.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS]
          Length = 207

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/124 (77%), Positives = 106/124 (85%), Gaps = 5/124 (4%)

Query: 1   MPAFSPRALD-----LVPTVVEQSGRSERAYDIYSRLLRERIIFLVGPVTDQSANLIVAQ 55
           M  F   ALD     ++P V+EQSGR ERA+DIYSRLL+ERIIFLVGPVTDQ+ANLIVAQ
Sbjct: 1   MTQFHDSALDTSMLGMIPMVIEQSGRGERAFDIYSRLLKERIIFLVGPVTDQNANLIVAQ 60

Query: 56  LLFLESEDPDKDISLYINSPGGVVYAGLAIYDTMQFIRPQVSTLCTGFAASMGAILLAAG 115
           LLFLESE+P+KDISLYINSPGG V AG+AIYDTMQFIRPQVSTLCTG AASMGA LLAAG
Sbjct: 61  LLFLESENPEKDISLYINSPGGSVSAGMAIYDTMQFIRPQVSTLCTGLAASMGAFLLAAG 120

Query: 116 KKXR 119
            K +
Sbjct: 121 AKGK 124


>gb|EGP42829.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           xylosoxidans AXX-A]
          Length = 217

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 102/115 (88%)

Query: 5   SPRALDLVPTVVEQSGRSERAYDIYSRLLRERIIFLVGPVTDQSANLIVAQLLFLESEDP 64
           +P  L  +P V+EQSGR ERAYDIYSRLLRER+IFLVGPV D +ANL+VAQLLFLESE+P
Sbjct: 18  TPTGLGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENP 77

Query: 65  DKDISLYINSPGGVVYAGLAIYDTMQFIRPQVSTLCTGFAASMGAILLAAGKKXR 119
           DKDISLYINSPGG VYAG+AIYDTMQFI+P VSTLCTG AASMGA LLAAGKK +
Sbjct: 78  DKDISLYINSPGGSVYAGMAIYDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGK 132


>gb|EFV85552.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           xylosoxidans C54]
          Length = 217

 Score =  198 bits (503), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 102/115 (88%)

Query: 5   SPRALDLVPTVVEQSGRSERAYDIYSRLLRERIIFLVGPVTDQSANLIVAQLLFLESEDP 64
           +P  L  +P V+EQSGR ERAYDIYSRLLRER+IFLVGPV D +ANL+VAQLLFLESE+P
Sbjct: 18  TPTGLGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENP 77

Query: 65  DKDISLYINSPGGVVYAGLAIYDTMQFIRPQVSTLCTGFAASMGAILLAAGKKXR 119
           DKDISLYINSPGG VYAG+AIYDTMQF++P VSTLCTG AASMGA LLAAGKK +
Sbjct: 78  DKDISLYINSPGGSVYAGMAIYDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGK 132