BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0043.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003051980.1| response regulator receiver modulated PAS/PA... 182 6e-44 ref|YP_004040548.1| response regulator receiver modulated PAS/PA... 181 1e-43 ref|ZP_01619340.1| two-component hybrid sensor and regulator [Ly... 151 2e-34 ref|YP_001099240.1| putative sensor/regulator protein [Herminiim... 150 2e-34 emb|CBX26913.1| hypothetical protein N47_A09420 [uncultured Desu... 143 3e-32 >ref|YP_003051980.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus glucosetrophus SIP3-4] gb|ACT51453.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus glucosetrophus SIP3-4] Length = 821 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 104/258 (40%), Positives = 151/258 (58%), Gaps = 10/258 (3%) Query: 1 MVEDDPGDVELSRYELTRAGIACDVQQVDTEDAFVDALSRYRPDIVLGDFSLPNFDGMSA 60 MVED P D ELS EL RAG+ C+ +V+TE F D + Y P ++L D+SLP FDGMSA Sbjct: 6 MVEDSPTDAELSLRELKRAGMTCEFMRVETEQDFRDQIQDYHPQLILSDYSLPQFDGMSA 65 Query: 61 LQIVQQITPDTPFLFVSGTMGEERAIKALKQGAYDYVLKSNLARLPSAVERALQEAHQNQ 120 L I +++ P+ PF+FVSGT+GEE AI +LK GA DY++K+NL+RLPSAV AL+ A + Sbjct: 66 LHIARELAPEIPFIFVSGTIGEETAIHSLKNGAADYIIKNNLSRLPSAVTSALERAEEKI 125 Query: 121 IRNKMEQALQAERNLLSAIFDTTGALGLMLDKEGRIVRFNQAAERTTGYTLSQVQGKHFW 180 + +ME+ L+ L A+ + D++G+ + N + Q+ GKH Sbjct: 126 MHKRMERELENSNRLFRVFMQNLPAIAFIKDQQGQYIFANASTVDALQLPHEQIIGKHDT 185 Query: 181 DVFFP--AEELEPVRNHFLNWHAQTQPLQYQSRWLTASGERREILW-LTTFLQEDHGSAL 237 +F P A+E+ L AQ + +Q+ ++ A + LW LTTF +D Sbjct: 186 LLFPPQLAQEMRAAEQQTL---AQGEAIQHVRQFPLADDVK---LWLLTTFPVQDMDGNF 239 Query: 238 NYICS-GIDITQWRQAED 254 N+I GIDIT+ R+AE+ Sbjct: 240 NHIGGIGIDITEQRKAEE 257 >ref|YP_004040548.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gb|ADQ85312.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 821 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 103/258 (39%), Positives = 151/258 (58%), Gaps = 10/258 (3%) Query: 1 MVEDDPGDVELSRYELTRAGIACDVQQVDTEDAFVDALSRYRPDIVLGDFSLPNFDGMSA 60 MVED P D ELS EL RAG+ C+ +V+TE F D + Y P ++L D+SLP FDGMSA Sbjct: 6 MVEDSPTDAELSLRELKRAGMTCEFMRVETEQDFRDQIQDYHPQLILSDYSLPQFDGMSA 65 Query: 61 LQIVQQITPDTPFLFVSGTMGEERAIKALKQGAYDYVLKSNLARLPSAVERALQEAHQNQ 120 L I +++ P+ PF+FVSGT+GEE AI +LK GA DY++K+NL+RLPSAV AL+ A + Sbjct: 66 LHIARELAPEIPFIFVSGTIGEETAIHSLKNGAADYIIKNNLSRLPSAVTSALERAEEKI 125 Query: 121 IRNKMEQALQAERNLLSAIFDTTGALGLMLDKEGRIVRFNQAAERTTGYTLSQVQGKHFW 180 + +ME+ L+ L A+ + D++G+ + N + ++ GKH Sbjct: 126 LHKRMERELENSNRLFRVFMQNLPAIAFIKDQQGQYIFANASTVDALQLPHEEIIGKHDT 185 Query: 181 DVFFP--AEELEPVRNHFLNWHAQTQPLQYQSRWLTASGERREILW-LTTFLQEDHGSAL 237 +F P A+E+ L AQ + +Q+ ++ A + LW LTTF +D Sbjct: 186 MLFPPQLAQEMRAAEQQTL---AQGEAIQHVRQFPLADDVK---LWLLTTFPVQDMDGNF 239 Query: 238 NYICS-GIDITQWRQAED 254 N+I GIDIT+ R+AE+ Sbjct: 240 NHIGGIGIDITEQRKAEE 257 >ref|ZP_01619340.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gb|EAW38800.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 650 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/259 (36%), Positives = 146/259 (56%), Gaps = 14/259 (5%) Query: 1 MVEDDPGDVELSRYELTRAGIACDVQQVDTEDAFVDALSRYRPDIVLGDFSLPNFDGMSA 60 ++EDD D EL + L + GI + V+ F + L PD++L D+ LP+FDG++A Sbjct: 6 LLEDDLVDRELIQTLLIKGGIEAEFTCVNRCSEFEEVLKTLFPDLILSDYVLPSFDGIAA 65 Query: 61 LQIVQQITPDTPFLFVSGTMGEERAIKALKQGAYDYVLKSNLARLPSAVERALQEAHQNQ 120 L+I QQI P+ PF+ VSG +GEERAI+ALKQGA DYVLK L RL +V+RAL+E+ + Q Sbjct: 66 LEIAQQICPEVPFIMVSGMLGEERAIEALKQGATDYVLKQRLERLVPSVKRALRESQERQ 125 Query: 121 IRNKMEQALQAERNLLSAIFDTTGALGLMLDKEGRIVRFNQAAERTTGYTLSQVQGKHFW 180 R ++E+AL+ +LL AI D + + L+ E +++ +N AAER G+ Q + Sbjct: 126 ERLRVEEALRQTDDLLKAIVDASPVAIITLNLEKKVITWNIAAERIYGW-----QSQEVI 180 Query: 181 DVFFPAEELEPVRNHFLNWHAQTQPLQYQSRW---LTASGERREILWLTTFLQEDH---G 234 D P + P + N Q Q LQ +R G+ +++ ++ L H G Sbjct: 181 DQLLPL--IPPEEDEQFNRLFQ-QALQNYTRTNYEFQHRGKNNDLIEISISLAPLHNAEG 237 Query: 235 SALNYICSGIDITQWRQAE 253 + + + +DIT ++ E Sbjct: 238 NVCGVVMTAVDITTRKRIE 256 >ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] emb|CAL61113.1| putative two-component response regulator [Herminiimonas arsenicoxydans] Length = 818 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/165 (44%), Positives = 107/165 (64%) Query: 1 MVEDDPGDVELSRYELTRAGIACDVQQVDTEDAFVDALSRYRPDIVLGDFSLPNFDGMSA 60 MVED P D EL+ EL R+GI ++V+TE L+ ++PD+VL DFS+P+FDG+SA Sbjct: 6 MVEDTPTDAELASRELKRSGILHQARRVETEQELRHELADFKPDVVLSDFSMPHFDGLSA 65 Query: 61 LQIVQQITPDTPFLFVSGTMGEERAIKALKQGAYDYVLKSNLARLPSAVERALQEAHQNQ 120 L++V+Q PDTPF+FVSG +GEE AI++LK GA DYV+K+NL+RLPSAV RA++ Q Sbjct: 66 LKVVRQELPDTPFIFVSGRIGEELAIESLKLGASDYVIKTNLSRLPSAVTRAMEHVEQRD 125 Query: 121 IRNKMEQALQAERNLLSAIFDTTGALGLMLDKEGRIVRFNQAAER 165 R ++E L + + + D++GR + N ++ Sbjct: 126 ARRRIETELLESNLMFRTFMENLPGAAFIKDQDGRYLYCNHGLDK 170 >emb|CBX26913.1| hypothetical protein N47_A09420 [uncultured Desulfobacterium sp.] Length = 459 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 153/261 (58%), Gaps = 15/261 (5%) Query: 2 VEDDPGDVELSRYELTRAGIACDVQQVDTEDAFVDALSRYRPDIVLGDFSLPNFDGMSAL 61 +ED+P D EL L+ AGI C++ + DT++ F+ + + DI+L D++LP+FDG+SAL Sbjct: 10 LEDNPNDSELIEEILSDAGIECEIIRTDTKEGFLSEIEKGCVDIILADYTLPSFDGLSAL 69 Query: 62 QIVQQITPDTPFLFVSGTMGEERAIKALKQGAYDYVLKSNLARLPSAVERALQEAH-QNQ 120 I + P+ PF+FV+GT+GE+ A+++LK+GA DYVLK L RL +++RAL+EA + + Sbjct: 70 DIALKNCPEAPFVFVTGTLGEDIAVESLKRGATDYVLKDRLIRLVPSIQRALKEAEFKKK 129 Query: 121 IRNKMEQALQAERNLLSAIFDTTGALGLMLDKEGRIVRFNQAAERTTGYTLSQVQGKHFW 180 + K ++ ++E N + + A L DK G + + E GY S++ G+ F+ Sbjct: 130 QKRKDDELRESEENFRELVENINDAFFLADDK-GVVTYISNPVESFWGYKPSEIIGRSFY 188 Query: 181 DVFFPAEELEPVRNHFLN-WHAQTQPLQYQSRWLTASGERREILWLTT----FLQEDHGS 235 + +P E+L+ V F N P+++ R +G EI+W+ + LQ++ Sbjct: 189 EFIYP-EDLDIVEQEFRNKISGYRTPIEF--RLTKKTG---EIIWVRSSGRIILQDNKII 242 Query: 236 ALNYICSGIDITQWRQAEDRV 256 + I+IT+ +++E+++ Sbjct: 243 GARGLL--INITESKKSEEKL 261