BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0033.p (451 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752362.1| TRAP dicarboxylate transporter, DctM subunit... 817 0.0 ref|YP_003776088.1| TRAP-type C4-dicarboxylate transport system ... 791 0.0 ref|ZP_08276094.1| TRAP dicarboxylate transporter, DctM subunit,... 756 0.0 ref|YP_523099.1| TRAP dicarboxylate transporter subunit DctM [Rh... 719 0.0 ref|YP_287218.1| TRAP dicarboxylate transporter, DctM subunit [D... 680 0.0 >ref|YP_004752362.1| TRAP dicarboxylate transporter, DctM subunit [Collimonas fungivorans Ter331] gb|AEK61539.1| TRAP dicarboxylate transporter, DctM subunit, unknown substrate 4 [Collimonas fungivorans Ter331] Length = 449 Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/449 (90%), Positives = 437/449 (97%) Query: 3 LTPLVLGSLYGIVTILVMCSGMPIAFALGVVATSFMYFFMPASSLDTVTQNVYEEIASIT 62 ++PL LG+LYGIVTI+VMCSGMPIAFALGVVATSFMYFFMPASSLDT+TQNVYEEIAS+T Sbjct: 1 MSPLALGALYGIVTIIVMCSGMPIAFALGVVATSFMYFFMPASSLDTITQNVYEEIASVT 60 Query: 63 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNRVPGGLGIANVFACALFAAMAGSSPATC 122 LLSIPLFILKGAAIG+SPAG+DLYSAIHAWL++VPGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGRSPAGRDLYSAIHAWLSKVPGGLGIANVFACALFAAMAGSSPATC 120 Query: 123 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 182 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVA+EQSLGRLFLAG+ Sbjct: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVASEQSLGRLFLAGV 180 Query: 183 GPGVLLVILFAGYAVFRAHKEYKMAHAIYTGGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 242 GPGVLLVILFAGYAV+RA KEY++AH IY+ GG KSAYLDDEHFT AQKVEMLPRVLPFL Sbjct: 181 GPGVLLVILFAGYAVYRARKEYRLAHEIYSQGGIKSAYLDDEHFTFAQKVEMLPRVLPFL 240 Query: 243 ILLIGVMIALYGGFATPSETAGLGALLAIVLIAVVYRIYKPRELVPFLNSTIKESGMLLL 302 ILLIGVMIALYGGFATPSETAGLGALLAIVLIAVVYR+++PR+L+PFLNSTIKES MLLL Sbjct: 241 ILLIGVMIALYGGFATPSETAGLGALLAIVLIAVVYRMWRPRDLMPFLNSTIKESCMLLL 300 Query: 303 IIGMSLLYSYVMSYLHISQSAAQWVVDMHLSKWLLLAVILLMVIVLGFFLPPVSIILMTA 362 IIGMSLLYSYVMSYLHISQSAAQWVV +HLSKWLLLAVILLMVIVLGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSAAQWVVALHLSKWLLLAVILLMVIVLGFFLPPVSIILMTA 360 Query: 363 PIILPPLREAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIPLSEVIKGTIPF 422 PIILPPLREAGFDLIWFG+VMTVVMEMGLIHPPVGLNLFVIKNIAPDIPLS+VIKGT+PF Sbjct: 361 PIILPPLREAGFDLIWFGVVMTVVMEMGLIHPPVGLNLFVIKNIAPDIPLSDVIKGTLPF 420 Query: 423 LALMFLAVILLCFFPGIATGLPDIIMGVK 451 L LMFLA+ILLC FPGI TGLPD++MG + Sbjct: 421 LLLMFLAIILLCLFPGIVTGLPDLLMGAR 449 >ref|YP_003776088.1| TRAP-type C4-dicarboxylate transport system large permease [Herbaspirillum seropedicae SmR1] gb|ADJ64180.1| TRAP-type C4-dicarboxylate transport system, large permease component protein [Herbaspirillum seropedicae SmR1] Length = 449 Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/449 (91%), Positives = 434/449 (96%) Query: 3 LTPLVLGSLYGIVTILVMCSGMPIAFALGVVATSFMYFFMPASSLDTVTQNVYEEIASIT 62 ++PL LG LYG+VTI+VMCSGMPIAFALGVVAT FMYFFMP SSLDT+TQNVYEEIASIT Sbjct: 1 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 Query: 63 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNRVPGGLGIANVFACALFAAMAGSSPATC 122 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLN+VPGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC 120 Query: 123 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 182 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI Sbjct: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 Query: 183 GPGVLLVILFAGYAVFRAHKEYKMAHAIYTGGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 242 GPGVLLV+LFAGYAV+RA KEY++AHA+Y+ GGAKSAYLDDEHFTLAQKVEMLPRVLPFL Sbjct: 181 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 Query: 243 ILLIGVMIALYGGFATPSETAGLGALLAIVLIAVVYRIYKPRELVPFLNSTIKESGMLLL 302 ILLIGVM+ALYGG ATPSETAGLGALLA+VLIAVVYRIYKPRE+ PFL+STIKESGMLLL Sbjct: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL 300 Query: 303 IIGMSLLYSYVMSYLHISQSAAQWVVDMHLSKWLLLAVILLMVIVLGFFLPPVSIILMTA 362 IIGMSLLYSYVMSYLHISQSAAQWVVD+HLSKWLLLAVIL MVIVLGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 Query: 363 PIILPPLREAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIPLSEVIKGTIPF 422 PIILPPL+ AGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDI L +VIKGTIPF Sbjct: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 Query: 423 LALMFLAVILLCFFPGIATGLPDIIMGVK 451 LALMFLAV+LLC FPGIAT LPD++MG K Sbjct: 421 LALMFLAVLLLCMFPGIATLLPDLLMGAK 449 >ref|ZP_08276094.1| TRAP dicarboxylate transporter, DctM subunit, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30441.1| TRAP dicarboxylate transporter, DctM subunit, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] Length = 449 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/449 (84%), Positives = 417/449 (92%) Query: 3 LTPLVLGSLYGIVTILVMCSGMPIAFALGVVATSFMYFFMPASSLDTVTQNVYEEIASIT 62 ++ L LG +YG+ T++VM SGMPIAFALGVVA SFMYFFMPASSLDTVTQNVYEE+ASIT Sbjct: 1 MSELTLGLMYGVATLVVMFSGMPIAFALGVVAVSFMYFFMPASSLDTVTQNVYEEMASIT 60 Query: 63 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNRVPGGLGIANVFACALFAAMAGSSPATC 122 LLSIPLFILKGAAIGKSPAGKDLYSAIH WL++VPGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHTWLHKVPGGLGIANVFACALFAAMAGSSPATC 120 Query: 123 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 182 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI Sbjct: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 Query: 183 GPGVLLVILFAGYAVFRAHKEYKMAHAIYTGGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 242 GPGVLLV LF+GYAV+RA KEY++AHA + G SAYL+ EHFTLAQKVEMLPRVLPF+ Sbjct: 181 GPGVLLVGLFSGYAVYRARKEYRLAHAAFLNNGTASAYLEVEHFTLAQKVEMLPRVLPFI 240 Query: 243 ILLIGVMIALYGGFATPSETAGLGALLAIVLIAVVYRIYKPRELVPFLNSTIKESGMLLL 302 +LL+GVM+ALYGG+ATPSETAGLGA+LA+VLIA+VY I+KPR+L P L+STIKES MLLL Sbjct: 241 VLLLGVMVALYGGYATPSETAGLGAMLALVLIAIVYGIWKPRDLAPILSSTIKESSMLLL 300 Query: 303 IIGMSLLYSYVMSYLHISQSAAQWVVDMHLSKWLLLAVILLMVIVLGFFLPPVSIILMTA 362 IIGMSLLYSYVMSYLHISQSAAQWVV M LSKW+LL VILLMV+V GFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSAAQWVVAMELSKWVLLTVILLMVVVFGFFLPPVSIILMTA 360 Query: 363 PIILPPLREAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIPLSEVIKGTIPF 422 PIILPPL+ AGFDLIWFG+VMT+VMEMGLIHPPVGLN+FVIKNIAPDIPL +VI G +PF Sbjct: 361 PIILPPLKAAGFDLIWFGVVMTIVMEMGLIHPPVGLNIFVIKNIAPDIPLKDVIVGVMPF 420 Query: 423 LALMFLAVILLCFFPGIATGLPDIIMGVK 451 + LMF+AVILLC FP IATGLP ++MGVK Sbjct: 421 VGLMFVAVILLCVFPEIATGLPAMLMGVK 449 >ref|YP_523099.1| TRAP dicarboxylate transporter subunit DctM [Rhodoferax ferrireducens T118] gb|ABD69568.1| TRAP dicarboxylate transporter- DctM subunit [Rhodoferax ferrireducens T118] Length = 449 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/449 (82%), Positives = 409/449 (91%) Query: 3 LTPLVLGSLYGIVTILVMCSGMPIAFALGVVATSFMYFFMPASSLDTVTQNVYEEIASIT 62 ++ L +G YG VT+LVM SGMPIAFALG VA +FMYFFMPASSLDTVTQNVYEE+ASIT Sbjct: 1 MSELSIGLSYGAVTLLVMFSGMPIAFALGTVAVTFMYFFMPASSLDTVTQNVYEEMASIT 60 Query: 63 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNRVPGGLGIANVFACALFAAMAGSSPATC 122 LLSIPLFI+KGAAIGKSPAG+DLYSAIHAWL++VPGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFIMKGAAIGKSPAGQDLYSAIHAWLHKVPGGLGIANVFACALFAAMAGSSPATC 120 Query: 123 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 182 SAIGSAGIPEMR+RGYSPGFAAGIIAAGGTLGILLPPSI MILYAVAAEQSLGRLFLAGI Sbjct: 121 SAIGSAGIPEMRKRGYSPGFAAGIIAAGGTLGILLPPSIVMILYAVAAEQSLGRLFLAGI 180 Query: 183 GPGVLLVILFAGYAVFRAHKEYKMAHAIYTGGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 242 GPG+LLV LFAGYAV RA +EYK A IY GG KSAYL +EHFTLAQKVEMLPRVLPF+ Sbjct: 181 GPGLLLVALFAGYAVVRARQEYKQALVIYQQGGPKSAYLIEEHFTLAQKVEMLPRVLPFV 240 Query: 243 ILLIGVMIALYGGFATPSETAGLGALLAIVLIAVVYRIYKPRELVPFLNSTIKESGMLLL 302 ILLIGVM+ALYGG ATPSETAGLG L+A+ LIAVVY I++P+++ P L ST+KES ML+L Sbjct: 241 ILLIGVMVALYGGLATPSETAGLGGLMALGLIAVVYGIWRPKDVAPILTSTLKESTMLML 300 Query: 303 IIGMSLLYSYVMSYLHISQSAAQWVVDMHLSKWLLLAVILLMVIVLGFFLPPVSIILMTA 362 IIGMSLLYSYVMS+LHISQ AAQW+V M LSKW+LL VILLMVIVLGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSHLHISQGAAQWIVAMQLSKWVLLGVILLMVIVLGFFLPPVSIILMTA 360 Query: 363 PIILPPLREAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIPLSEVIKGTIPF 422 PIILPPL+ AGFDLIWFG+VMT+VMEMGLIHPPVGLN+FVIKN+APDIPL +VI G +PF Sbjct: 361 PIILPPLKAAGFDLIWFGVVMTIVMEMGLIHPPVGLNIFVIKNVAPDIPLKDVIWGVMPF 420 Query: 423 LALMFLAVILLCFFPGIATGLPDIIMGVK 451 + LMF AV LLC FPGI TGLP+++MGVK Sbjct: 421 VGLMFGAVFLLCLFPGIVTGLPNLVMGVK 449 >ref|YP_287218.1| TRAP dicarboxylate transporter, DctM subunit [Dechloromonas aromatica RCB] gb|AAZ48748.1| TRAP dicarboxylate transporter, DctM subunit [Dechloromonas aromatica RCB] Length = 450 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/443 (76%), Positives = 390/443 (88%) Query: 8 LGSLYGIVTILVMCSGMPIAFALGVVATSFMYFFMPASSLDTVTQNVYEEIASITLLSIP 67 +G LYG+ T+ VM SG+PIAFALG +A FM FMPA++ DT+TQNV+EE+A+ITLLSIP Sbjct: 6 IGILYGLGTLAVMFSGIPIAFALGSIAVLFMLLFMPAAATDTITQNVFEEMANITLLSIP 65 Query: 68 LFILKGAAIGKSPAGKDLYSAIHAWLNRVPGGLGIANVFACALFAAMAGSSPATCSAIGS 127 LFILKGAAIG+S AG DLY AIHAW++++PGGLGIANVFACALFAAMAGSSPATCSAIG Sbjct: 66 LFILKGAAIGRSRAGADLYLAIHAWMHKIPGGLGIANVFACALFAAMAGSSPATCSAIGG 125 Query: 128 AGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGIGPGVL 187 AGIPEMR RGYSPGFAAGIIAAGGTLGILLPPSITMIL+AVAAEQSLGRLFLAGI PG+L Sbjct: 126 AGIPEMRARGYSPGFAAGIIAAGGTLGILLPPSITMILFAVAAEQSLGRLFLAGIFPGLL 185 Query: 188 LVILFAGYAVFRAHKEYKMAHAIYTGGGAKSAYLDDEHFTLAQKVEMLPRVLPFLILLIG 247 LV LFAGYAVFR EY A ++ GGAKSAYLD+ T A K MLPRV+PF++LLIG Sbjct: 186 LVFLFAGYAVFRFKVEYNSALDVWHSGGAKSAYLDEMRMTRADKTRMLPRVIPFVLLLIG 245 Query: 248 VMIALYGGFATPSETAGLGALLAIVLIAVVYRIYKPRELVPFLNSTIKESGMLLLIIGMS 307 VM+ALYGG+ATPSETAGLG +LA+ LIA +Y +++P +L P LNST+KES ML+ IIGMS Sbjct: 246 VMLALYGGYATPSETAGLGGILALALIAGIYGVWRPSQLKPILNSTLKESTMLMFIIGMS 305 Query: 308 LLYSYVMSYLHISQSAAQWVVDMHLSKWLLLAVILLMVIVLGFFLPPVSIILMTAPIILP 367 LLYSYVMSYLHISQSAA+W+V MHLSKWLLLA IL+ V++LGFFLPPVSIILMTAPIILP Sbjct: 306 LLYSYVMSYLHISQSAAEWIVAMHLSKWLLLAAILIFVVILGFFLPPVSIILMTAPIILP 365 Query: 368 PLREAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIPLSEVIKGTIPFLALMF 427 PL+ AGFDLIWFGIVMTVVMEMGLIHPPVGLN+FVIKN+APDIPL +++ G PF+ LMF Sbjct: 366 PLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNIFVIKNVAPDIPLKDIVWGVFPFVGLMF 425 Query: 428 LAVILLCFFPGIATGLPDIIMGV 450 LAVILLC FPGIAT LPD++MGV Sbjct: 426 LAVILLCIFPGIATWLPDVVMGV 448