BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0032.p (191 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776089.1| TRAP-type C4-dicarboxylate transport system ... 279 1e-73 ref|YP_004752361.1| Tripartite ATP-independent periplasmic trans... 273 1e-71 ref|ZP_08276093.1| TRAP dicarboxylate transporter, DctQ subunit,... 251 3e-65 ref|YP_523098.1| tripartite ATP-independent periplasmic transpor... 204 7e-51 ref|YP_287219.1| tripartite ATP-independent periplasmic transpor... 192 2e-47 >ref|YP_003776089.1| TRAP-type C4-dicarboxylate transport system small permease [Herbaspirillum seropedicae SmR1] gb|ADJ64181.1| TRAP-type C4-dicarboxylate transport system, small permease component protein [Herbaspirillum seropedicae SmR1] Length = 192 Score = 279 bits (714), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 147/192 (76%), Positives = 165/192 (85%), Gaps = 2/192 (1%) Query: 1 MSHGFEMQPQA--KPTAPANAVVAGLHHALEKFNKLAVFLAMVALMLTSIILTYSVVARY 58 MSHGFEM A +P PA+A VA L L ++++AVFL M+AL++TS ILTYSVV RY Sbjct: 1 MSHGFEMPGAAATRPEVPASAPVAWLGAFLRGYHRVAVFLGMIALLVTSCILTYSVVVRY 60 Query: 59 FFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGFLSPRANQVRMFIVDLVS 118 FFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAG LSP AN+VRMFIVD+VS Sbjct: 61 FFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPLANRVRMFIVDVVS 120 Query: 119 FVFCAFFAWKSWTLFHEAWVDGQTTSSTFAPPLWIPYSMMAIGMTVLTLQLLVQILTRIT 178 +FCAFF WKSW LFHEAWV+GQTTSSTFAPPLWIPYS+MA+GMT+LTLQLLVQ+L RIT Sbjct: 121 LLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLLVQVLVRIT 180 Query: 179 GTVPASVAAKEQ 190 GTVPA+ A Q Sbjct: 181 GTVPATPAGGAQ 192 >ref|YP_004752361.1| Tripartite ATP-independent periplasmic transporter, DctQ component [Collimonas fungivorans Ter331] gb|AEK61538.1| Tripartite ATP-independent periplasmic transporter, DctQ component [Collimonas fungivorans Ter331] Length = 197 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 130/181 (71%), Positives = 152/181 (83%), Gaps = 3/181 (1%) Query: 1 MSHGFEMQPQAKPTAPA---NAVVAGLHHALEKFNKLAVFLAMVALMLTSIILTYSVVAR 57 MSHGF+ +P A P PA N VVA L LE+F+KLA++L+M ALMLTS+I+TYSVVAR Sbjct: 1 MSHGFDPKPNAGPALPAMPDNPVVAVLAGILERFHKLALYLSMTALMLTSLIMTYSVVAR 60 Query: 58 YFFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGFLSPRANQVRMFIVDLV 117 YFFH PTDWQD+A+VFMLVGVIFLC+ Y QSLRGHIGIEAL+ L N VR+ +VDLV Sbjct: 61 YFFHVPTDWQDDATVFMLVGVIFLCAGYAQSLRGHIGIEALSSVLPAGVNAVRLLLVDLV 120 Query: 118 SFVFCAFFAWKSWTLFHEAWVDGQTTSSTFAPPLWIPYSMMAIGMTVLTLQLLVQILTRI 177 SF+FC FF+WKSWTLFHEAW +GQTTSSTFAPPLWIPYS+MA+GMTVLTLQLL Q+L R+ Sbjct: 121 SFLFCGFFSWKSWTLFHEAWSEGQTTSSTFAPPLWIPYSLMALGMTVLTLQLLAQVLARL 180 Query: 178 T 178 T Sbjct: 181 T 181 >ref|ZP_08276093.1| TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30440.1| TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] Length = 187 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 117/179 (65%), Positives = 142/179 (79%) Query: 1 MSHGFEMQPQAKPTAPANAVVAGLHHALEKFNKLAVFLAMVALMLTSIILTYSVVARYFF 60 MSHGFE++P P P N VVA L AL+ FN+ + L+M AL+LT+++LTYSVV+RYFF Sbjct: 1 MSHGFELEPVKGPAVPDNPVVAKLAKALDAFNQGLLMLSMGALILTALVLTYSVVSRYFF 60 Query: 61 HQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGFLSPRANQVRMFIVDLVSFV 120 PTDWQDEASVFMLVGV F C AYVQ+LRGHIGIEALA L PR N RM VD++S + Sbjct: 61 KLPTDWQDEASVFMLVGVTFFCCAYVQALRGHIGIEALASILPPRVNAARMMFVDVMSLL 120 Query: 121 FCAFFAWKSWTLFHEAWVDGQTTSSTFAPPLWIPYSMMAIGMTVLTLQLLVQILTRITG 179 FC FF+WKSW LFHEA+V+G TTSSTFAPPLWIPY MMA GM++L+LQ+ +Q+L R+T Sbjct: 121 FCLFFSWKSWALFHEAFVEGFTTSSTFAPPLWIPYGMMAFGMSLLSLQIAMQVLIRVTN 179 >ref|YP_523098.1| tripartite ATP-independent periplasmic transporter DctQ [Rhodoferax ferrireducens T118] gb|ABD69567.1| Tripartite ATP-independent periplasmic transporter, DctQ component [Rhodoferax ferrireducens T118] Length = 165 Score = 204 bits (518), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 94/139 (67%), Positives = 112/139 (80%) Query: 24 LHHALEKFNKLAVFLAMVALMLTSIILTYSVVARYFFHQPTDWQDEASVFMLVGVIFLCS 83 L +L N + L+M AL+LTS +LTYSV RYFF TDWQDEASVFMLVG IF+C+ Sbjct: 2 LARSLNWINLQVLRLSMAALVLTSAVLTYSVATRYFFKTATDWQDEASVFMLVGAIFMCT 61 Query: 84 AYVQSLRGHIGIEALAGFLSPRANQVRMFIVDLVSFVFCAFFAWKSWTLFHEAWVDGQTT 143 AYVQS+RGH+GIEALA L N+VR +VD+VS +FC+FFAWKSWTLFHEAW +GQTT Sbjct: 62 AYVQSMRGHVGIEALATLLPASVNRVRATVVDIVSTLFCSFFAWKSWTLFHEAWAEGQTT 121 Query: 144 SSTFAPPLWIPYSMMAIGM 162 SS+FAPPLWIPYS+MA+GM Sbjct: 122 SSSFAPPLWIPYSLMAVGM 140 >ref|YP_287219.1| tripartite ATP-independent periplasmic transporter DctQ [Dechloromonas aromatica RCB] gb|AAZ48749.1| Tripartite ATP-independent periplasmic transporter, DctQ component [Dechloromonas aromatica RCB] Length = 183 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 91/163 (55%), Positives = 114/163 (69%), Gaps = 1/163 (0%) Query: 1 MSHGFEMQPQAK-PTAPANAVVAGLHHALEKFNKLAVFLAMVALMLTSIILTYSVVARYF 59 MSHGFE++ K P P ++ G++ + + +FL+ AL+ ++IL SV RYF Sbjct: 1 MSHGFEIEGAVKAPEIPETGILGGINRVMTGLHTAIMFLSSGALLGAALILCSSVFLRYF 60 Query: 60 FHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGFLSPRANQVRMFIVDLVSF 119 PTDWQDE SVF+LVG F+C+ YVQS RGHIGIEAL G L P AN++R+ DLVS Sbjct: 61 LKIPTDWQDEMSVFLLVGATFMCAGYVQSQRGHIGIEALGGLLPPLANRLRLLFCDLVSL 120 Query: 120 VFCAFFAWKSWTLFHEAWVDGQTTSSTFAPPLWIPYSMMAIGM 162 +FCAFF+WKS LFHEAWVDGQTTSS++APPL IPY M GM Sbjct: 121 LFCAFFSWKSILLFHEAWVDGQTTSSSWAPPLAIPYGFMTAGM 163