BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0031.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752360.1| TRAP transporter solute receptor [Collimonas... 543 e-152 ref|ZP_08276092.1| TRAP transporter solute receptor, unknown sub... 542 e-152 ref|YP_003776090.1| TRAP-type C4-dicarboxylate transport system ... 527 e-147 ref|YP_287220.1| TRAP dicarboxylate transporter- DctP subunit [D... 504 e-141 ref|YP_523097.1| TRAP dicarboxylate transporter subunit DctP [Rh... 504 e-140 >ref|YP_004752360.1| TRAP transporter solute receptor [Collimonas fungivorans Ter331] gb|AEK61537.1| TRAP transporter solute receptor, unknown substrate 4 [Collimonas fungivorans Ter331] Length = 329 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 264/323 (81%), Positives = 291/323 (90%), Gaps = 5/323 (1%) Query: 9 IIGALATAPLWTAGSSAWAQGAPTSLKISHQFPGGTINEGDFRDRLTRMFAEGVAKRTNG 68 ++GALA+ P W+ SS WAQ +LKISHQFPGGTI+EGDFRDRLTRMFA V KR+ Sbjct: 1 MLGALASTPFWSM-SSVWAQSG--ALKISHQFPGGTISEGDFRDRLTRMFAAEVGKRSG- 56 Query: 69 SLKFEIYPGSSLMKVNAQFSAMRKGALDLSLVPLNYAGGEVPETNIGLMPGLVTSYAQGS 128 LKFEIYPGSSLMK N+QFSA+RKGALD SLVPLNYAGGEVPE NIGLMPGLVTSY QG+ Sbjct: 57 -LKFEIYPGSSLMKTNSQFSALRKGALDFSLVPLNYAGGEVPEVNIGLMPGLVTSYEQGA 115 Query: 129 AWKNAEVGKELARILAEKGILIVSWIWQAGGVASRSKPIIDPADAKGMKVRGGSREMDLI 188 AWKN+EVGKEL+RIL EKG++IVSWIWQAGGVASR KPIIDP+DAKG+KVRGGSREMDLI Sbjct: 116 AWKNSEVGKELSRILLEKGVIIVSWIWQAGGVASRGKPIIDPSDAKGLKVRGGSREMDLI 175 Query: 189 LKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGRDKAYWYMFE 248 LKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTS ISFRLEEV+K+LT+GRDKAYWYM E Sbjct: 176 LKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSLISFRLEEVSKSLTSGRDKAYWYMLE 235 Query: 249 PLMISKAVFEKLSKDQQAAIMAVGAEMEQFALKAAQTDDVAVAAVYQKAGAKVVDLNAAT 308 PLMISKA F++L+K+QQ A+MAVGAEMEQFA AA+ DD VAAVYQKAGAKVVDLNAAT Sbjct: 236 PLMISKATFDRLTKEQQVAVMAVGAEMEQFATNAARLDDSGVAAVYQKAGAKVVDLNAAT 295 Query: 309 VKKWQDIARATAWKDFAARNASC 331 VKKWQDIAR TAWKD+AARN +C Sbjct: 296 VKKWQDIARNTAWKDYAARNDNC 318 >ref|ZP_08276092.1| TRAP transporter solute receptor, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30439.1| TRAP transporter solute receptor, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] Length = 339 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 263/342 (76%), Positives = 299/342 (87%), Gaps = 3/342 (0%) Query: 1 MTSQKRRSIIGALATAPLWTAGSSAWAQGAPTSLKISHQFPGGTINEGDFRDRLTRMFAE 60 M S RR+++GA+A +PL++ +AWAQ T+LKISHQFPGGT EGDFRDRL R FA Sbjct: 1 MFSTTRRTLLGAIAASPLFSI-PAAWAQ--TTALKISHQFPGGTATEGDFRDRLCRQFAT 57 Query: 61 GVAKRTNGSLKFEIYPGSSLMKVNAQFSAMRKGALDLSLVPLNYAGGEVPETNIGLMPGL 120 V KR+ GSLKFE+YPGSSLMK NAQFS+MRKGALD+SLVPL+YAGGE+PE NIGLMPGL Sbjct: 58 EVEKRSKGSLKFEVYPGSSLMKTNAQFSSMRKGALDMSLVPLSYAGGEMPEVNIGLMPGL 117 Query: 121 VTSYAQGSAWKNAEVGKELARILAEKGILIVSWIWQAGGVASRSKPIIDPADAKGMKVRG 180 VTSY QG WKNAEVG+EL R+L EKGI++VSWIWQAGGVASR+ PI++P DAKG+K+RG Sbjct: 118 VTSYEQGYGWKNAEVGRELNRLLLEKGIVVVSWIWQAGGVASRTIPIVEPEDAKGLKIRG 177 Query: 181 GSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGRD 240 GSREMDLILK AGAAVV+LPSNEIYAAMQTGAMDAA+TSSTS ISFRLEEV+K+LTTGR Sbjct: 178 GSREMDLILKAAGAAVVSLPSNEIYAAMQTGAMDAALTSSTSLISFRLEEVSKSLTTGRG 237 Query: 241 KAYWYMFEPLMISKAVFEKLSKDQQAAIMAVGAEMEQFALKAAQTDDVAVAAVYQKAGAK 300 KAYW+MFEPLM+SK VF+KLSKDQQA IMAVG E+E A K+AQTDD VAAVYQK GAK Sbjct: 238 KAYWFMFEPLMMSKVVFDKLSKDQQAIIMAVGGELETMARKSAQTDDSLVAAVYQKTGAK 297 Query: 301 VVDLNAATVKKWQDIARATAWKDFAARNASCANLLKLAEKLL 342 VVDL+ ATVKKWQ IARATAWKD+A RNA+CANLLKLAEK L Sbjct: 298 VVDLSEATVKKWQTIARATAWKDYAERNANCANLLKLAEKTL 339 >ref|YP_003776090.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64182.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 255/287 (88%), Positives = 271/287 (94%) Query: 56 RMFAEGVAKRTNGSLKFEIYPGSSLMKVNAQFSAMRKGALDLSLVPLNYAGGEVPETNIG 115 RMFA+ V++RT G+LKFEIYPGSSLMK NAQFSAMRKGALD+SLVPLNYAGGEVPETNIG Sbjct: 2 RMFAQQVSERTKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNIG 61 Query: 116 LMPGLVTSYAQGSAWKNAEVGKELARILAEKGILIVSWIWQAGGVASRSKPIIDPADAKG 175 LMPGLVTSY QG+AWKNAEVGKELAR+LAEKG++IVSWIWQAGGVASR KPI+DP+DAKG Sbjct: 62 LMPGLVTSYQQGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAKG 121 Query: 176 MKVRGGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKAL 235 MKVRGGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSF+SFRLEEVAKAL Sbjct: 122 MKVRGGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKAL 181 Query: 236 TTGRDKAYWYMFEPLMISKAVFEKLSKDQQAAIMAVGAEMEQFALKAAQTDDVAVAAVYQ 295 TTGRDKAYWYMFEPLMISKAVFE+L KDQQ+ IMAVGAEMEQFA KAAQ DD+AVA VYQ Sbjct: 182 TTGRDKAYWYMFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVYQ 241 Query: 296 KAGAKVVDLNAATVKKWQDIARATAWKDFAARNASCANLLKLAEKLL 342 KAGAKVVDLNA VKKWQDIAR TAWKDFAARNA+CA LL LAEK L Sbjct: 242 KAGAKVVDLNAEVVKKWQDIARNTAWKDFAARNANCAKLLALAEKTL 288 >ref|YP_287220.1| TRAP dicarboxylate transporter- DctP subunit [Dechloromonas aromatica RCB] gb|AAZ48750.1| TRAP dicarboxylate transporter- DctP subunit [Dechloromonas aromatica RCB] Length = 341 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 248/338 (73%), Positives = 285/338 (84%), Gaps = 2/338 (0%) Query: 6 RRSII-GALATAPLWTAGSSAWAQGAPTSLKISHQFPGGTINEGDFRDRLTRMFAEGVAK 64 RR+I+ G +AT L + + WAQ A LKISHQFPGGT EGDFRDRL R F+ + K Sbjct: 5 RRNILKGMVATPALALSPNLLWAQAA-GELKISHQFPGGTATEGDFRDRLCRRFSAEITK 63 Query: 65 RTNGSLKFEIYPGSSLMKVNAQFSAMRKGALDLSLVPLNYAGGEVPETNIGLMPGLVTSY 124 RTNG+L+ +YPGSSLMK NAQFS++RKGALD++LVPL+YAGGEVPETNIGLMPG+VTSY Sbjct: 64 RTNGALRGTVYPGSSLMKTNAQFSSVRKGALDMTLVPLSYAGGEVPETNIGLMPGIVTSY 123 Query: 125 AQGSAWKNAEVGKELARILAEKGILIVSWIWQAGGVASRSKPIIDPADAKGMKVRGGSRE 184 Q +WK AE+GK LA ILA+KG+L+VSWIWQAGGVASR KPIIDP DAKG+KVRGGSRE Sbjct: 124 EQAVSWKKAEIGKALANILADKGVLVVSWIWQAGGVASRVKPIIDPEDAKGLKVRGGSRE 183 Query: 185 MDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGRDKAYW 244 MD++LK+AGA V+TLPSNEIYAAMQTGA+DAAMTSSTS ISFRLEEV KALTTGR K YW Sbjct: 184 MDMVLKQAGATVLTLPSNEIYAAMQTGALDAAMTSSTSLISFRLEEVGKALTTGRGKTYW 243 Query: 245 YMFEPLMISKAVFEKLSKDQQAAIMAVGAEMEQFALKAAQTDDVAVAAVYQKAGAKVVDL 304 +MFEPL+IS+AVFEKL K QQ AIMAVGAEME +AL+ A+ DD AVAAVYQKAG K DL Sbjct: 244 FMFEPLLISRAVFEKLPKAQQDAIMAVGAEMEAYALEGARADDQAVAAVYQKAGGKAYDL 303 Query: 305 NAATVKKWQDIARATAWKDFAARNASCANLLKLAEKLL 342 + A+VKKWQ IAR TAWKDFAA+N SCA +LKLAE L Sbjct: 304 SDASVKKWQAIARDTAWKDFAAKNESCARILKLAEATL 341 >ref|YP_523097.1| TRAP dicarboxylate transporter subunit DctP [Rhodoferax ferrireducens T118] gb|ABD69566.1| TRAP dicarboxylate transporter- DctP subunit [Rhodoferax ferrireducens T118] Length = 338 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 246/343 (71%), Positives = 288/343 (83%), Gaps = 11/343 (3%) Query: 5 KRRSII---GALA--TAPLWTAGSSAWAQGAPTSLKISHQFPGGTINEGDFRDRLTRMFA 59 +RR ++ G LA T P S A+AQ ++LKISHQFPGGTI EGDFRDRL R FA Sbjct: 2 QRRQLLQSMGGLAASTMPF----SLAFAQ--TSALKISHQFPGGTIKEGDFRDRLVRNFA 55 Query: 60 EGVAKRTNGSLKFEIYPGSSLMKVNAQFSAMRKGALDLSLVPLNYAGGEVPETNIGLMPG 119 V KR+ G++KFEIYPGSSLMK NAQFS+MRKGALD++L+PL+YAGGEVPE NIGLMPG Sbjct: 56 AEVEKRSKGAMKFEIYPGSSLMKTNAQFSSMRKGALDMALIPLSYAGGEVPELNIGLMPG 115 Query: 120 LVTSYAQGSAWKNAEVGKELARILAEKGILIVSWIWQAGGVASRSKPIIDPADAKGMKVR 179 LV SY Q +WK VG EL R+L EKGI+++SWIWQAGGVASR KP+++P DAKGMK+R Sbjct: 116 LVVSYEQAYSWKTKPVGIELTRVLQEKGIVLISWIWQAGGVASRGKPVVEPEDAKGMKIR 175 Query: 180 GGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGR 239 GGSREMD+ILK+AGAAVV+LPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGR Sbjct: 176 GGSREMDMILKDAGAAVVSLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGR 235 Query: 240 DKAYWYMFEPLMISKAVFEKLSKDQQAAIMAVGAEMEQFALKAAQTDDVAVAAVYQKAGA 299 AYW+MFEPLM+SKA+F+KL KDQ+ +M VGAEME+FAL+AA+ DD+ VAAVYQKAGA Sbjct: 236 TGAYWFMFEPLMMSKAIFDKLPKDQRDMLMTVGAEMEKFALEAAKKDDIDVAAVYQKAGA 295 Query: 300 KVVDLNAATVKKWQDIARATAWKDFAARNASCANLLKLAEKLL 342 KVVDL+ T+KKWQDIAR TAWKD+ A+N CA LL LA++ L Sbjct: 296 KVVDLSDGTIKKWQDIARKTAWKDYGAKNEGCAKLLALAQQTL 338