BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0029.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_298798.1| LysR family transcriptional regulator [Ralstoni... 460 e-127 ref|YP_001862757.1| LysR family transcriptional regulator [Burkh... 459 e-127 ref|XP_002534171.1| SDS degradation transcriptional activation p... 459 e-127 ref|YP_364054.1| LysR family transcriptional regulator [Xanthomo... 457 e-127 ref|YP_003979072.1| LysR family transcriptional regulator [Achro... 456 e-126 >ref|YP_298798.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ63954.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 294 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 231/293 (78%), Positives = 255/293 (87%) Query: 1 MREINLDRLRTLVAIADHGSFAEAARVLHLAPPTISLHIADLEERIGAALLSRKRGQIRP 60 MREI+LDRLRTLVAIADHGSFA AAR LHLAPPT+SLHIA+LE RIGA LLSRKRGQ+RP Sbjct: 1 MREISLDRLRTLVAIADHGSFAGAARALHLAPPTVSLHIAELEHRIGAPLLSRKRGQVRP 60 Query: 61 TTIGETLIERARRLLADAEQALEDVQRQVQGLAGRVRLGASTGAIAHLLPQALEVLGQDH 120 + IGE L+ER RRLLADAEQAL+D+QRQV+GL GR RLGASTGAIAHLLPQALEVL Q H Sbjct: 61 SAIGEVLLERGRRLLADAEQALDDIQRQVEGLEGRARLGASTGAIAHLLPQALEVLRQQH 120 Query: 121 PGIDVQVEVLTSQDTLTRLSEGTLDVGLVALPQTPVARLVVQPWRRDPVMAFLPSGWRSP 180 PGID+Q+ VLTSQ+TL+RL++GTLD+GLVALPQ PVA LV++PWRRDPVMAF+P W+ P Sbjct: 121 PGIDIQIAVLTSQETLSRLADGTLDIGLVALPQPPVAGLVIKPWRRDPVMAFVPGHWQCP 180 Query: 181 AQVTPEWLAAQPLILNDAGTRLSHLTQEWFAGGGQRPAPRIQLNYNDAIKSLVAAGYGAT 240 A+VTPEWLAAQPLILNDA TRLS T EWFA G PAPRIQLNYNDAIKSLVAAGYGA Sbjct: 181 ARVTPEWLAAQPLILNDATTRLSRQTAEWFAAAGHHPAPRIQLNYNDAIKSLVAAGYGAA 240 Query: 241 LLPHEQGAPLPDPRVQMLPLRPALWRQLGIAHRAENIERPTQHVLDVLWRFSL 293 LLPHE PLPD R+ M PLRPALWR+LGIAHRA +ER TQHVLDVLW L Sbjct: 241 LLPHEATTPLPDKRIVMRPLRPALWRRLGIAHRAGYVERSTQHVLDVLWDLRL 293 >ref|YP_001862757.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC75711.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 294 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 229/293 (78%), Positives = 255/293 (87%) Query: 1 MREINLDRLRTLVAIADHGSFAEAARVLHLAPPTISLHIADLEERIGAALLSRKRGQIRP 60 MREI+LDRLRTLVAIAD GSFA+AAR LHLAPPT+SLHIA+LE+R+GA LLSRKRGQ+RP Sbjct: 1 MREISLDRLRTLVAIADRGSFADAARALHLAPPTVSLHIAELEQRVGAPLLSRKRGQVRP 60 Query: 61 TTIGETLIERARRLLADAEQALEDVQRQVQGLAGRVRLGASTGAIAHLLPQALEVLGQDH 120 + IGE L+ERARRLLADAEQ LED+QRQVQGL GR RLGASTGAIAHLLPQALEVL Q H Sbjct: 61 SAIGEVLVERARRLLADAEQTLEDIQRQVQGLEGRARLGASTGAIAHLLPQALEVLRQHH 120 Query: 121 PGIDVQVEVLTSQDTLTRLSEGTLDVGLVALPQTPVARLVVQPWRRDPVMAFLPSGWRSP 180 P ID+Q+ VLTSQ+TL+RL++GTLDVGLVALPQ PV LV++PWRRDPVMAF+P+ WR P Sbjct: 121 PAIDIQIAVLTSQETLSRLADGTLDVGLVALPQPPVVGLVIKPWRRDPVMAFVPAHWRCP 180 Query: 181 AQVTPEWLAAQPLILNDAGTRLSHLTQEWFAGGGQRPAPRIQLNYNDAIKSLVAAGYGAT 240 A+VTPEWLAAQPLILNDA TRLS LT EWFA G P PRIQLN+NDAIKSLVAAGYGA Sbjct: 181 ARVTPEWLAAQPLILNDATTRLSRLTAEWFATAGHHPVPRIQLNFNDAIKSLVAAGYGAA 240 Query: 241 LLPHEQGAPLPDPRVQMLPLRPALWRQLGIAHRAENIERPTQHVLDVLWRFSL 293 LLPHE PLPD R+ M PLRPALWR+LGIA+RA +ER TQHVLDVLW L Sbjct: 241 LLPHEATTPLPDKRIVMRPLRPALWRRLGIAYRAGYVERSTQHVLDVLWDLRL 293 >ref|XP_002534171.1| SDS degradation transcriptional activation protein, putative [Ricinus communis] gb|EEF28209.1| SDS degradation transcriptional activation protein, putative [Ricinus communis] Length = 294 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 230/293 (78%), Positives = 256/293 (87%) Query: 1 MREINLDRLRTLVAIADHGSFAEAARVLHLAPPTISLHIADLEERIGAALLSRKRGQIRP 60 MREI+LDRLRTLVAIADHGSFAEAAR LHLAPPT+SLHIA+LE RIGA LLSRKRGQIRP Sbjct: 1 MREISLDRLRTLVAIADHGSFAEAARALHLAPPTVSLHIAELEHRIGAPLLSRKRGQIRP 60 Query: 61 TTIGETLIERARRLLADAEQALEDVQRQVQGLAGRVRLGASTGAIAHLLPQALEVLGQDH 120 + IGE L+ER RRLLADA +AL+D+QRQV+GL GR RLGASTGAIAHLLPQALEVL Q H Sbjct: 61 SAIGELLVERGRRLLADAGRALDDIQRQVEGLEGRARLGASTGAIAHLLPQALEVLRQQH 120 Query: 121 PGIDVQVEVLTSQDTLTRLSEGTLDVGLVALPQTPVARLVVQPWRRDPVMAFLPSGWRSP 180 P ID+Q+ VLTSQ+TL+RL++GT+D+GLVALPQ VA LV++PWRRDPVMAF+P+ W+SP Sbjct: 121 PAIDIQIAVLTSQETLSRLTDGTVDIGLVALPQPAVAGLVIKPWRRDPVMAFVPAHWKSP 180 Query: 181 AQVTPEWLAAQPLILNDAGTRLSHLTQEWFAGGGQRPAPRIQLNYNDAIKSLVAAGYGAT 240 A+VTPEWLAAQPLILNDA TRLS T EWFA GG PAPRIQLNYNDAIKSLVAAGYGA Sbjct: 181 ARVTPEWLAAQPLILNDATTRLSRQTAEWFAAGGHHPAPRIQLNYNDAIKSLVAAGYGAA 240 Query: 241 LLPHEQGAPLPDPRVQMLPLRPALWRQLGIAHRAENIERPTQHVLDVLWRFSL 293 LLPHE PLPD R+ M PLRPALWR+LGIAHRA +ER TQHVLDVLW L Sbjct: 241 LLPHEATTPLPDKRIVMRPLRPALWRRLGIAHRAGYVERSTQHVLDVLWSLRL 293 >ref|YP_364054.1| LysR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] emb|CAJ24000.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gb|ACA14445.1| LysR family transcriptional regulator [Enterobacter cloacae] gb|ACE81800.1| putative transcriptional regulator, LysR family [Enterobacter cloacae] Length = 294 Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust. Identities = 229/292 (78%), Positives = 253/292 (86%) Query: 1 MREINLDRLRTLVAIADHGSFAEAARVLHLAPPTISLHIADLEERIGAALLSRKRGQIRP 60 MREI+LDRLRTLVAIAD GSFAEAARVLHLAPPT+SLHIADLE R+G LLSR RG+I+P Sbjct: 1 MREISLDRLRTLVAIADLGSFAEAARVLHLAPPTVSLHIADLESRVGGKLLSRTRGRIQP 60 Query: 61 TTIGETLIERARRLLADAEQALEDVQRQVQGLAGRVRLGASTGAIAHLLPQALEVLGQDH 120 + IGETL+ERARRLLADAEQALEDV+RQVQGLAGRVRLGASTGAIA L+PQALE LGQ H Sbjct: 61 SAIGETLVERARRLLADAEQALEDVERQVQGLAGRVRLGASTGAIAQLMPQALETLGQRH 120 Query: 121 PGIDVQVEVLTSQDTLTRLSEGTLDVGLVALPQTPVARLVVQPWRRDPVMAFLPSGWRSP 180 P IDVQV VLTSQ+TL +L+EG+L++GLVALPQTPV L ++PWRRDPVMAFLP+ W P Sbjct: 121 PAIDVQVAVLTSQETLKKLAEGSLEIGLVALPQTPVKELRIEPWRRDPVMAFLPARWECP 180 Query: 181 AQVTPEWLAAQPLILNDAGTRLSHLTQEWFAGGGQRPAPRIQLNYNDAIKSLVAAGYGAT 240 VTP WLAAQPLILND TRLS LT EWFA G++P PRIQLNYNDAIKSLVAAGYGAT Sbjct: 181 DVVTPGWLAAQPLILNDKTTRLSRLTSEWFASDGRQPTPRIQLNYNDAIKSLVAAGYGAT 240 Query: 241 LLPHEQGAPLPDPRVQMLPLRPALWRQLGIAHRAENIERPTQHVLDVLWRFS 292 LLPHE PLPD R+ M PL+P LWRQLGIAHR ++ERPTQHVLDVLW S Sbjct: 241 LLPHEASTPLPDTRIVMRPLQPLLWRQLGIAHRGGDVERPTQHVLDVLWGLS 292 >ref|YP_003979072.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP16357.1| bacterial regulatory helix-turn-helix protein, LysR family protein 89 [Achromobacter xylosoxidans A8] Length = 297 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 230/291 (79%), Positives = 259/291 (89%) Query: 1 MREINLDRLRTLVAIADHGSFAEAARVLHLAPPTISLHIADLEERIGAALLSRKRGQIRP 60 MREI+LDRLRTLVAIAD GSFA+AAR LHLAPPTISLH+ADLE RIGA LL+RKRGQ+RP Sbjct: 1 MREISLDRLRTLVAIADLGSFADAARALHLAPPTISLHVADLEARIGAPLLTRKRGQVRP 60 Query: 61 TTIGETLIERARRLLADAEQALEDVQRQVQGLAGRVRLGASTGAIAHLLPQALEVLGQDH 120 T+IGETL+ERARRLLADA+QAL+DVQRQVQGLAGRVRLGASTGAIAHLLPQALE LG++H Sbjct: 61 TSIGETLLERARRLLADADQALDDVQRQVQGLAGRVRLGASTGAIAHLLPQALETLGRNH 120 Query: 121 PGIDVQVEVLTSQDTLTRLSEGTLDVGLVALPQTPVARLVVQPWRRDPVMAFLPSGWRSP 180 PGIDVQV VLTSQ+TL RL++G+LDVGLVALPQ P+ LV++PWRRDPVMAFLP+ W++P Sbjct: 121 PGIDVQVAVLTSQETLLRLADGSLDVGLVALPQPPLEGLVLRPWRRDPVMAFLPASWQAP 180 Query: 181 AQVTPEWLAAQPLILNDAGTRLSHLTQEWFAGGGQRPAPRIQLNYNDAIKSLVAAGYGAT 240 A++TP WLA +PLILNDA TRLS LT EWFA G P RIQLNYNDAIKSLVAAGYGAT Sbjct: 181 ARLTPAWLAERPLILNDASTRLSRLTGEWFAAAGLNPRARIQLNYNDAIKSLVAAGYGAT 240 Query: 241 LLPHEQGAPLPDPRVQMLPLRPALWRQLGIAHRAENIERPTQHVLDVLWRF 291 LLPHE AP PDPR++M PLRPALWR LGIAHRA +E+ T+HVLDVLW Sbjct: 241 LLPHEATAPQPDPRIEMRPLRPALWRPLGIAHRAGQVEQATRHVLDVLWEL 291