BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0026.p (375 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776092.1| 23S RNA-specific pseudouridylate synthase [H... 407 e-111 ref|YP_004754175.1| ribosomal large subunit pseudouridine syntha... 379 e-103 ref|ZP_08132449.1| RNA pseudouridine synthase [Kingella denitrif... 315 9e-84 ref|ZP_07992575.1| pseudouridine synthase [Neisseria mucosa C102... 312 6e-83 ref|ZP_04756769.1| YabO/YceC/SfhB family protein [Neisseria flav... 311 9e-83 >ref|YP_003776092.1| 23S RNA-specific pseudouridylate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ64184.1| 23S RNA-specific pseudouridylate synthase protease protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 201/301 (66%), Positives = 228/301 (75%), Gaps = 3/301 (0%) Query: 76 MRPTAPLPLKDGVAPSYLWLQDAAGVWNNMLDFLTARFPGVTEEAWRQRMARGEVVNQDG 135 MRPT LP+++G++PSYLWLQ G W ML FL RF V E WR+R+ RGEV NQ G Sbjct: 1 MRPTPTLPMREGLSPSYLWLQ--PGPWRTMLSFLAERFTAVPEPVWRERLLRGEVRNQHG 58 Query: 136 VALAPDSAYRRGDCLFYYRDLEGGEAPIPFTEQILHQDAHLLVVDKPHFVPVIPTGRFLH 195 AL PD+ YR GDC+FYYR+L GEA IP E+ILH D HLLV DKPHF+PVIPTGRF+ Sbjct: 59 EALQPDTPYRSGDCIFYYRELPQGEARIPVEEKILHLDDHLLVADKPHFLPVIPTGRFVQ 118 Query: 196 ESLLVRLKKKTGLADLTPIHRLDRETAGVIIFSHNPASRGAYQAMFQQRTMDKTYEALAG 255 E+LLVRLKK TGL DL PIHRLDRETAGVI+FSH PASRG YQ+MFQQR M K YEA+A Sbjct: 119 ETLLVRLKKATGLQDLVPIHRLDRETAGVIVFSHQPASRGKYQSMFQQRAMFKVYEAIAP 178 Query: 256 LLEGRSFPFTHRSRMVD-ADKFFLMREEEGAPNSETHVDLIERRGALGLYRLNPVTGRKH 314 L P HRSR+ + ++FF M E EGAPNSETH+ LIE RGALGLYRL PVTGR+H Sbjct: 179 LRSDLELPRVHRSRVEEIPEQFFKMHEAEGAPNSETHISLIEARGALGLYRLEPVTGRRH 238 Query: 315 QLRVHMAALGIPIVNDNFYPHVVPAGTADNYDAPLKLLARSIAFTDPLSGDVRYFESLRT 374 QLRVHMAALGIPI+ND FYP VP G AD+ D PLKLLARS+ F DPL G R+F S R Sbjct: 239 QLRVHMAALGIPILNDLFYPEAVPVGVADDLDKPLKLLARSLFFIDPLDGSERHFSSERN 298 Query: 375 L 375 L Sbjct: 299 L 299 >ref|YP_004754175.1| ribosomal large subunit pseudouridine synthase A-like protein [Collimonas fungivorans Ter331] gb|AEK63352.1| ribosomal large subunit pseudouridine synthase A-like protein [Collimonas fungivorans Ter331] Length = 307 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 191/296 (64%), Positives = 223/296 (75%), Gaps = 4/296 (1%) Query: 80 APLPLKDGVAPSYLWLQDAAGVWNNMLDFLTARFPGVTEEAWRQRMARGEVVNQDGVALA 139 APLP+ DGVAPSYLWL AG W ++L FL RFP ++ W RMARGEVV+ +GV LA Sbjct: 16 APLPVIDGVAPSYLWL--PAGEWPDLLSFLEQRFPAISSATWVARMARGEVVDGEGVRLA 73 Query: 140 PDSAYRRGDCLFYYRDLEGGEAPIPFTEQILHQDAHLLVVDKPHFVPVIPTGRFLHESLL 199 P S YRRG +FYYR+L E PIPF IL+QD +LV DKPHF+PVIP+GRFLHE+LL Sbjct: 74 PGSPYRRGMRIFYYRELPA-ETPIPFEASILYQDERILVADKPHFLPVIPSGRFLHETLL 132 Query: 200 VRLKKKTGLADLTPIHRLDRETAGVIIFSHNPASRGAYQAMFQQRTMDKTYEALAGLLEG 259 VRLKK+TGLADLTPIHRLDRETAGV+IFSH+ ASRGAYQ++FQQR +DKTYEALA G Sbjct: 133 VRLKKQTGLADLTPIHRLDRETAGVVIFSHDVASRGAYQSLFQQRLVDKTYEALAPSAPG 192 Query: 260 RSFPFTHRSRMVDADKFFLMREEEGAPNSETHVDLIERRGALGLYRLNPVTGRKHQLRVH 319 P +RSRMV+ FF M+E G PNSET ++LIE+R YRL P+TG+KHQLRVH Sbjct: 193 LVLPLVYRSRMVEGTPFFRMQEVAGEPNSETRIELIEQRETCSRYRLRPLTGKKHQLRVH 252 Query: 320 MAALGIPIVNDNFYPHVVPAGTADNYDAPLKLLARSIAFTDPLSGDVRYFESLRTL 375 +AALGIPI+ND FYP V P D+ APLKLLAR IAF DPL G R+F S R L Sbjct: 253 LAALGIPIINDAFYPEVHPC-KGDDLSAPLKLLAREIAFVDPLDGRRRHFASQREL 307 >ref|ZP_08132449.1| RNA pseudouridine synthase [Kingella denitrificans ATCC 33394] gb|EGC18370.1| RNA pseudouridine synthase [Kingella denitrificans ATCC 33394] Length = 309 Score = 315 bits (806), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 161/307 (52%), Positives = 209/307 (68%), Gaps = 8/307 (2%) Query: 76 MRPTAPLPLKDGVAPSYLWL-QDAAGVWNNMLDFLTARFPGVTEEAWRQRMARGEVVNQD 134 M+ PLPL GV PSYL L D +L FL ARFP V E AW+ R+ G VVNQ Sbjct: 4 MKAKNPLPLLHGVKPSYLVLPHDKQFYGQPLLHFLCARFPFVGEAAWKARLNSGMVVNQH 63 Query: 135 GVALAPDSAYRRGDCLFYYRDLEGGEAP-IPFTEQILHQDAHLLVVDKPHFVPVIPTGRF 193 G + ++++ G+ +FYYR+ P IPF E ILH D HL+VVDKPHF+PVIP+GRF Sbjct: 64 GRPINEHASFQPGETIFYYRETSRESEPRIPFDEHILHIDQHLIVVDKPHFLPVIPSGRF 123 Query: 194 LHESLLVRLKKKTGL-----ADLTPIHRLDRETAGVIIFSHNPASRGAYQAMFQQRTMDK 248 L E+LL RL+ + L AD+TP+HRLD++TAGV++ SHNPASR AYQ MF ++T+ K Sbjct: 124 LRETLLTRLRLRADLQHLNVADITPVHRLDKDTAGVMLLSHNPASRAAYQQMFAEKTVQK 183 Query: 249 TYEALAGLLEGRSFPFTHRSRMVDADKFFLMREEEGAPNSETHVDLIERRGALGLYRLNP 308 TY ALA +P T +SR+V + FFL +E +G PN++T + L+E G + LY L P Sbjct: 184 TYHALAPTRLDLPYPLTVQSRLVRGESFFLTQEVDGTPNAQTEIRLLEMHGDVSLYELKP 243 Query: 309 VTGRKHQLRVHMAALGIPIVNDNFYPHVVPAGTADNYDAPLKLLARSIAFTDPLSGDVRY 368 +TG+KHQLRVHM LG+P++ND YP V+PAGT D Y PLKLLA+SI F DP+SG+ R Sbjct: 244 LTGKKHQLRVHMMKLGMPLLNDALYPDVLPAGTED-YAKPLKLLAKSIGFIDPISGEERV 302 Query: 369 FESLRTL 375 FES + L Sbjct: 303 FESRQAL 309 >ref|ZP_07992575.1| pseudouridine synthase [Neisseria mucosa C102] gb|EFV81619.1| pseudouridine synthase [Neisseria mucosa C102] Length = 307 Score = 312 bits (799), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 163/304 (53%), Positives = 204/304 (67%), Gaps = 8/304 (2%) Query: 79 TAPLPLKDGVAPSYLWLQDAAGVWN-NMLDFLTARFPGVTEEAWRQRMARGEVVNQDGVA 137 T PLPL DGV PSYL L + +L FL A FP V EE WR+R+ G VV DGV Sbjct: 5 TNPLPLLDGVKPSYLVLPHEKQFYGLPLLHFLCAHFPFVGEENWRRRLNSGFVVGADGVP 64 Query: 138 LAPDSAYRRGDCLFYYRDLEGGEAP-IPFTEQILHQDAHLLVVDKPHFVPVIPTGRFLHE 196 ++ + G +FYYR+ P IPF E+ILH D HLLVVDKPHF+PVIP+GRFL E Sbjct: 65 FDENTLFEPGKTMFYYRETSRESEPRIPFDEKILHIDEHLLVVDKPHFLPVIPSGRFLRE 124 Query: 197 SLLVRLK-----KKTGLADLTPIHRLDRETAGVIIFSHNPASRGAYQAMFQQRTMDKTYE 251 +LL RL+ + + D+TPIHRLD++TAGV++ S NPA+R YQ MFQ++T+ KTYE Sbjct: 125 TLLTRLRLRPELQHLNVEDITPIHRLDKDTAGVMLLSLNPATRRDYQTMFQEKTVQKTYE 184 Query: 252 ALAGLLEGRSFPFTHRSRMVDADKFFLMREEEGAPNSETHVDLIERRGALGLYRLNPVTG 311 A+A +P SRM +KFFL RE EG PN+ T ++LIE RGA LYRL P TG Sbjct: 185 AVAPTRTDLDYPLHISSRMERGEKFFLTRETEGKPNAHTTIELIENRGAFSLYRLTPHTG 244 Query: 312 RKHQLRVHMAALGIPIVNDNFYPHVVPAGTADNYDAPLKLLARSIAFTDPLSGDVRYFES 371 +KHQLRVHM +L +P++ND YP + AG D YD PLKLLA+ I FTDP+SG++R FES Sbjct: 245 KKHQLRVHMMSLNMPLMNDALYPTPLAAGDED-YDKPLKLLAKRIEFTDPVSGEIRVFES 303 Query: 372 LRTL 375 TL Sbjct: 304 RFTL 307 >ref|ZP_04756769.1| YabO/YceC/SfhB family protein [Neisseria flavescens SK114] gb|EER57362.1| YabO/YceC/SfhB family protein [Neisseria flavescens SK114] Length = 307 Score = 311 bits (798), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 162/304 (53%), Positives = 205/304 (67%), Gaps = 8/304 (2%) Query: 79 TAPLPLKDGVAPSYLWLQDAAGVWN-NMLDFLTARFPGVTEEAWRQRMARGEVVNQDGVA 137 T PLPL DGV PSYL L + +L FL FP V EE WR+R+ G VV DGV Sbjct: 5 TNPLPLLDGVKPSYLVLPHEKQFYGLPLLHFLCVHFPFVGEENWRRRLNSGFVVGADGVP 64 Query: 138 LAPDSAYRRGDCLFYYRDLEGGEAP-IPFTEQILHQDAHLLVVDKPHFVPVIPTGRFLHE 196 ++ + G +FYYR+ P IPF E+ILH D HL+VVDKPHF+PVIP+GRFL E Sbjct: 65 FDENTLFEPGKTMFYYRETSRESEPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRE 124 Query: 197 SLLVRLKKKTGL-----ADLTPIHRLDRETAGVIIFSHNPASRGAYQAMFQQRTMDKTYE 251 +LL RL+ ++ L D+TPIHRLD++TAGV++ S NPA+R YQ MFQ++T+ KTYE Sbjct: 125 TLLTRLRLRSELQHLNVEDITPIHRLDKDTAGVMLLSLNPATRRDYQTMFQEKTVQKTYE 184 Query: 252 ALAGLLEGRSFPFTHRSRMVDADKFFLMREEEGAPNSETHVDLIERRGALGLYRLNPVTG 311 A+A +P SRM +KFFL RE EG PN+ T ++LIE RGA LYRL P TG Sbjct: 185 AVAPTRTDLDYPLDLSSRMERGEKFFLTRETEGEPNAHTTIELIENRGAFSLYRLTPHTG 244 Query: 312 RKHQLRVHMAALGIPIVNDNFYPHVVPAGTADNYDAPLKLLARSIAFTDPLSGDVRYFES 371 +KHQLRVHM +L +P++ND YP+ + AG D YD PLKLLA+ I FTDP+SG++R FES Sbjct: 245 KKHQLRVHMMSLNMPLMNDALYPNPLAAGDED-YDRPLKLLAKRIEFTDPVSGEIRVFES 303 Query: 372 LRTL 375 TL Sbjct: 304 GFTL 307