BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0024.p (223 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776093.1| HipA-like protein [Herbaspirillum seropedica... 317 8e-85 ref|ZP_08273325.1| Amidase [Oxalobacteraceae bacterium IMCC9480]... 193 2e-47 ref|YP_004752602.1| HipA-like protein [Collimonas fungivorans Te... 139 4e-31 ref|ZP_08874170.1| HipA-like protein [Verminephrobacter sp. At4] 119 4e-25 ref|YP_004155525.1| hipa n-terminal domain-containing protein [V... 117 1e-24 >ref|YP_003776093.1| HipA-like protein [Herbaspirillum seropedicae SmR1] gb|ADJ64185.1| HipA-like protein [Herbaspirillum seropedicae SmR1] Length = 446 Score = 317 bits (812), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 160/224 (71%), Positives = 179/224 (79%), Gaps = 6/224 (2%) Query: 1 MSMLRSLRIRLGVTEVGSLFALDDGRVYFRFDDAYAVD-PNRPVLSQLYRGSTEERTVAQ 59 MSMLRSLRIRLG TEVGSLFALDDGR YFRFDDAYA+ P RPVLSQLY STEERT AQ Sbjct: 1 MSMLRSLRIRLGQTEVGSLFALDDGRCYFRFDDAYALQGPQRPVLSQLYSASTEERTRAQ 60 Query: 60 LLNPALEANRGDGKGGLPAFFQNLLPEGQLRKHLIERAGLAPDDEFGLLAYCGKDLPGDV 119 LL+P L ANRGDG+GGLP FFQNLLPEGQLRKHL++RAGLAPDDEFGLLAYCG+DLPGDV Sbjct: 61 LLDPTLAANRGDGRGGLPPFFQNLLPEGQLRKHLVQRAGLAPDDEFGLLAYCGRDLPGDV 120 Query: 120 SALSETLDDRHLGRLIGQGRDSYEMSAGQLPTPDGESISGVQPKIGLVRAAGGRYVMRSK 179 SA +E LD+R LGRL+GQG DSYEMS+GQLP P GES+SGVQPK+ LVR AGGRYVMRSK Sbjct: 121 SASAEELDERGLGRLLGQGHDSYEMSSGQLPVPGGESLSGVQPKLALVREAGGRYVMRSK 180 Query: 180 DSRGAHFIGSCRPRIIRKCRKWNSPRWHWRAPPVCKCASTNWCR 223 DS G+HFI + N P+ + + + A + CR Sbjct: 181 DSHGSHFIAK-----LPATDYPNMPQVEFSSLTLAAAAGVHTCR 219 >ref|ZP_08273325.1| Amidase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33197.1| Amidase [Oxalobacteraceae bacterium IMCC9480] Length = 562 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 98/160 (61%), Positives = 119/160 (74%), Gaps = 2/160 (1%) Query: 1 MSMLRSLRIRLGVTEVGSLFALDDGRVYFRFDDAYAVDPNRPVLSQLYRGSTEERTVAQL 60 MS +RSLRIR+G+T+ GSLF LDDGRVYFRFD+AYA++P RP+LS + G + T A+L Sbjct: 1 MSAVRSLRIRIGLTDAGSLFGLDDGRVYFRFDEAYALNPARPILSMSFTGEDDVATRARL 60 Query: 61 LNPALEANRGDGKGGLPAFFQNLLPEGQLRKHLIERAGLAPDDEFGLLAYCGKDLPGDVS 120 L+P L A G G G LP FF+NLLPEG LRKHL+ AGL+PDDE GLLAYCG DLPGDV Sbjct: 61 LDPLLPATFGAGNGKLPGFFRNLLPEGMLRKHLLSDAGLSPDDELGLLAYCGTDLPGDVW 120 Query: 121 ALSETLDDRHLGRLIGQGRDSYEMSAGQL--PTPDGESIS 158 AL+ETLDD LGRL+ QG D+ + G L P P+ +S Sbjct: 121 ALAETLDDVALGRLLTQGHDACRWTIGLLVAPLPNAARVS 160 >ref|YP_004752602.1| HipA-like protein [Collimonas fungivorans Ter331] gb|AEK61779.1| HipA-like protein [Collimonas fungivorans Ter331] Length = 437 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 84/185 (45%), Positives = 106/185 (57%), Gaps = 3/185 (1%) Query: 4 LRSLRIRLGVTEVGSLFALDDGRVYFRFDDAYAVDPNRPVLSQLYRGSTEERTVAQLLNP 63 L +L I + G LF D V F+ D AYA DP RP LS R +T ++ +A LLNP Sbjct: 3 LSALDIFVAERLAGVLFQYGD-MVRFQVDPAYAQDPQRPTLSLSMRAATPQQDMALLLNP 61 Query: 64 ALEANRGDGKGGLPAFFQNLLPEGQLRKHLIERAGLAPDDEFGLLAYCGKDLPGDVSALS 123 G+ LPAFFQNLLPEG LRK + A DD F LLA CG+DLPG V A+ Sbjct: 62 LAAIFNSPGQMRLPAFFQNLLPEGVLRKQIALERKCAEDDHFELLAACGRDLPGAVRAIP 121 Query: 124 ETLDDRHLGRLIGQGRDSYEMSAGQLPTPDGESISGVQPKIGLVRAAGGRYVMRSKDSRG 183 L + RL+ Q +++ E S P DG SISG+QPK+ L+ GGRYV R++ + Sbjct: 122 TRLTRATMTRLVTQDKEAIEESVSAAPLVDGVSISGMQPKLALI-LEGGRYVSRTRH-KD 179 Query: 184 AHFIG 188 AH IG Sbjct: 180 AHIIG 184 >ref|ZP_08874170.1| HipA-like protein [Verminephrobacter sp. At4] Length = 441 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/190 (41%), Positives = 102/190 (53%), Gaps = 8/190 (4%) Query: 5 RSLRIRLGVTE--VGSLFALDDGRVYFRF---DDAYAVDPNRPVLSQLYRGSTEERTVAQ 59 R+L + LG + VG L+ GR D Y D PV SQ R + A Sbjct: 4 RALHVFLGTRKRFVGQLYQYGTGRTAITRLVPDPDYWSDGAAPVFSQNAR-VADAHARAM 62 Query: 60 LLNPALEANRGDGKG-GLPAFFQNLLPEGQLRKHLIERAGLAPDDEFGLLAYCGKDLPGD 118 L + +G+G LP FFQNLLPEG LR+HL E L D+FGLL+ CG DLPG Sbjct: 63 FLAEYIVQPFFNGEGENLPIFFQNLLPEGLLRRHLEEIGNLDKGDDFGLLSLCGTDLPGA 122 Query: 119 VSALSETLDDRHLGRLIGQGRDSYEMSAGQLPTPDGESISGVQPKIGLVRAAGGRYVMRS 178 V LD + + R++ Q D+ E + + P+ S+SGVQPK+ LV+AA GRYV R+ Sbjct: 123 VCVEQAPLDKQSVARVVTQNNDTLEPTVTPVALPEATSLSGVQPKLSLVQAA-GRYVART 181 Query: 179 KDSRGAHFIG 188 K+ RG H I Sbjct: 182 KNPRGVHIIA 191 >ref|YP_004155525.1| hipa n-terminal domain-containing protein [Variovorax paradoxus EPS] gb|ADU37414.1| HipA N-terminal domain protein [Variovorax paradoxus EPS] Length = 430 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/188 (42%), Positives = 98/188 (52%), Gaps = 9/188 (4%) Query: 4 LRSLRIRLGVTEVGSLFALDDGRVYFRFDDAYAVDPNRPVLSQLYRGS---TEERTVAQL 60 ++ L I LG G LF D F + P + VLS S T+ A + Sbjct: 3 VKILEISLGTRRFGKLFQYAD-LCRFVAEPELIAAPPQEVLSLSMVASDPATQAALWADV 61 Query: 61 LNPALEANRGDGKGGLPAFFQNLLPEGQLRKHLIERAGLAPDDEFGLLAYCGKDLPGDVS 120 NP A G LP FFQNLLPEG LR H+ + G +D F LLA CG DLPG VS Sbjct: 62 KNPLFNAQGGQ----LPRFFQNLLPEGVLRSHIAQLRGCRENDHFELLAACGGDLPGAVS 117 Query: 121 ALSETLDDRHLGRLIGQGRDSYEMSAGQLPTPDGESISGVQPKIGLVRAAGGRYVMRSKD 180 A ++D L RLI Q +D+ EMS +LP P G S+SGVQPK+GL R GGRYV R++ Sbjct: 118 AKPVSVDRGTLQRLITQDQDALEMSVVELPMPQGISVSGVQPKLGL-RRQGGRYVARTRA 176 Query: 181 SRGAHFIG 188 I Sbjct: 177 GASTRVIA 184