BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0017.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001355195.1| hypothetical protein mma_3505 [Janthinobacte...   153   8e-36
ref|YP_003776101.1| hypothetical protein Hsero_2697 [Herbaspiril...   145   2e-33
ref|YP_001101505.1| hypothetical protein HEAR3277 [Herminiimonas...   141   3e-32
gb|EFV87229.1| secreted repeat protein [Achromobacter xylosoxida...   127   6e-28
ref|YP_775619.1| hypothetical protein Bamb_3731 [Burkholderia am...   122   2e-26

>ref|YP_001355195.1| hypothetical protein mma_3505 [Janthinobacterium sp. Marseille]
 gb|ABR90289.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 124

 Score =  153 bits (387), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 93/124 (75%), Gaps = 5/124 (4%)

Query: 4   LPLSLLTLTLLSSAV--PAAFAEEMAVKKTDDVLVTTKGMTVYTFDNDPV--GKSVCNGP 59
           + LS + L+ +++ V   +A+A+ + VKK D +LVTT GMTVYTFD D    GKS CNGP
Sbjct: 1   MKLSQIVLSAVAAVVLSGSAYAQSVPVKKADGILVTTSGMTVYTFDKDVADSGKSACNGP 60

Query: 60  CATAWPPVAPVGT-PSAPFSVIKRDDGSPQLALNGKPLYLFASDKNPGDRNGDNFKNIWH 118
           CATAWPPV+      SAP+SV+ RDDG+PQLA  GKPLYLFASDK  GDR GDNFK+IWH
Sbjct: 61  CATAWPPVSAKDVKASAPYSVVTRDDGTPQLAYKGKPLYLFASDKKAGDRTGDNFKDIWH 120

Query: 119 VVKN 122
           VVK+
Sbjct: 121 VVKD 124


>ref|YP_003776101.1| hypothetical protein Hsero_2697 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64193.1| exported protein [Herbaspirillum seropedicae SmR1]
          Length = 123

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 79/108 (73%), Gaps = 2/108 (1%)

Query: 16  SAVPAAFAEEMAVKKTDDVLVTTKGMTVYTFDNDP--VGKSVCNGPCATAWPPVAPVGTP 73
           SA   A A+   VK  D +LV   GMTVYTFD D    GKSVCNGPCA  WPPVAP+G+P
Sbjct: 15  SASVTALAQGAGVKAMDGILVDAHGMTVYTFDKDTPNNGKSVCNGPCAKLWPPVAPMGSP 74

Query: 74  SAPFSVIKRDDGSPQLALNGKPLYLFASDKNPGDRNGDNFKNIWHVVK 121
           +AP+S + RDDGS QLA  GKPLYL+  DK PGDR GDNFK++WHVVK
Sbjct: 75  AAPYSTVTRDDGSAQLAYQGKPLYLYEQDKKPGDRAGDNFKDVWHVVK 122


>ref|YP_001101505.1| hypothetical protein HEAR3277 [Herminiimonas arsenicoxydans]
 emb|CAL63384.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 124

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/123 (58%), Positives = 87/123 (70%), Gaps = 6/123 (4%)

Query: 3   LLPLSLLTLTLLSSAVPAAFAEEMAVKKTDDVLVTTKGMTVYTFDNDPV--GKSVCNGPC 60
           L+  S +   LLSSA   +FA+ + VKK D +LVT+ GMTVYTFD D    GKS CNGPC
Sbjct: 5   LILFSAIAALLLSSA---SFAQTVPVKKVDGILVTSTGMTVYTFDKDVADSGKSTCNGPC 61

Query: 61  ATAWPPVAPVGT-PSAPFSVIKRDDGSPQLALNGKPLYLFASDKNPGDRNGDNFKNIWHV 119
              WPPV+     P+ P+S++ RDDGS QLA  GKPLYLFA+DK  GDRNGDN K+IWHV
Sbjct: 62  TANWPPVSAKDVKPTPPYSIVTRDDGSAQLAYKGKPLYLFAADKKAGDRNGDNVKDIWHV 121

Query: 120 VKN 122
           VK+
Sbjct: 122 VKD 124


>gb|EFV87229.1| secreted repeat protein [Achromobacter xylosoxidans C54]
          Length = 122

 Score =  127 bits (319), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 61/114 (53%), Positives = 74/114 (64%), Gaps = 2/114 (1%)

Query: 10  TLTLLSSAVPAAFAEEMAVKKTDDVLVTTKGMTVYTFDNDPVGKSVCNGPCATAWPPV-- 67
           TL L  +A+ +A A   AVK  D +LV + GMT+YTFD D  GKS CN  CA  WPPV  
Sbjct: 8   TLALSCAALFSAGAHAQAVKTQDGILVNSAGMTLYTFDKDAGGKSACNDQCAKIWPPVTA 67

Query: 68  APVGTPSAPFSVIKRDDGSPQLALNGKPLYLFASDKNPGDRNGDNFKNIWHVVK 121
           A     S   S+I RDDGS Q A  GKP+YL+A D  PGD+ GDNFK++WHV+K
Sbjct: 68  AADAKASGDLSIITRDDGSKQWAYKGKPVYLYAKDAKPGDKTGDNFKDVWHVIK 121


>ref|YP_775619.1| hypothetical protein Bamb_3731 [Burkholderia ambifaria AMMD]
 gb|ABI89285.1| Secreted repeat of unknown function [Burkholderia ambifaria AMMD]
          Length = 124

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 74/117 (63%), Gaps = 4/117 (3%)

Query: 8   LLTLTLLSSAVPAAFAEEMAVKKTDDVLVTTKGMTVYTFDNDP--VGKSVCNGPCATAWP 65
           L++  +L+ A  +A A+    K  +  LV   GMTVY FD D    G S C+GPC T WP
Sbjct: 6   LVSSAVLAMASVSASAQGSITKVENGALVAANGMTVYAFDKDKPNAGTSACSGPCETLWP 65

Query: 66  PVAPVGT--PSAPFSVIKRDDGSPQLALNGKPLYLFASDKNPGDRNGDNFKNIWHVV 120
           P     T  P+ P++++KRDDGSPQ A  GKPLY F+ D   GDRNGDNFKN+WHVV
Sbjct: 66  PYKASATDVPAGPYTIVKRDDGSPQWAYKGKPLYFFSKDMKQGDRNGDNFKNVWHVV 122