BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0012.p (234 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776105.1| hypothetical protein Hsero_2701 [Herbaspiril... 266 3e-69 ref|YP_003673766.1| hypothetical protein M301_0805 [Methylotener... 209 3e-52 ref|YP_003048528.1| hypothetical protein Mmol_1093 [Methylotener... 202 3e-50 ref|YP_004040647.1| hypothetical protein MPQ_2265 [Methylovorus ... 199 2e-49 ref|YP_003052076.1| hypothetical protein Msip34_2307 [Methylovor... 199 2e-49 >ref|YP_003776105.1| hypothetical protein Hsero_2701 [Herbaspirillum seropedicae SmR1] gb|ADJ64197.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 204 Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 133/181 (73%), Positives = 149/181 (82%), Gaps = 2/181 (1%) Query: 54 LTVQVLDIAGAPVPNAVVYAEAVGGQAVPKSL-KQAEVEQKDVKFFPLVSVVQVGTPILF 112 ++VQVLD AG P+PNAVVY E G A P +Q E+EQK+ F PLV+VVQ GTPILF Sbjct: 25 VSVQVLDAAGQPMPNAVVYVEPAGAAAPPAKAPRQVEIEQKNKTFMPLVTVVQTGTPILF 84 Query: 113 PNHDKVRHHVYSFSPAKTFELKLYSGVPTSPILFDKVGTVVLGCNIHDQMVAYVQVVNTP 172 PNHD VRHHVYSFSPAKTFELKLYSGVP SP++FDK GTVVLGCNIHD+MVAYVQVVNTP Sbjct: 85 PNHDNVRHHVYSFSPAKTFELKLYSGVPGSPVVFDKAGTVVLGCNIHDEMVAYVQVVNTP 144 Query: 173 FFGKTDMSGRVKLDGLVNGKYALKAWYFKMAPNEAAMEQPITYQGADLHASVKLNVKAVP 232 FFG TD SG VKL+G+ NGKY LKAWYF M PNEAA+EQP+ QG D AS+KLNVKAVP Sbjct: 145 FFGVTDRSGSVKLEGVGNGKYTLKAWYFTMGPNEAAVEQPLQVQG-DGRASIKLNVKAVP 203 Query: 233 V 233 + Sbjct: 204 L 204 >ref|YP_003673766.1| hypothetical protein M301_0805 [Methylotenera versatilis 301] gb|ADI29189.1| conserved hypothetical protein [Methylotenera versatilis 301] Length = 207 Score = 209 bits (531), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 102/185 (55%), Positives = 132/185 (71%), Gaps = 3/185 (1%) Query: 37 LFALLAAGAALN--AAAATLTVQVLDIAGAPVPNAVVYAEAVGGQAVPKSLKQAEVEQKD 94 LF+ L LN A AA + VQV D+AGA V NAVVY E + P QA + QK+ Sbjct: 12 LFSFLLLTCMLNPHAKAAEIEVQVNDVAGASVENAVVYLEP-KDKTAPILKSQAAIAQKN 70 Query: 95 VKFFPLVSVVQVGTPILFPNHDKVRHHVYSFSPAKTFELKLYSGVPTSPILFDKVGTVVL 154 F PLV+V+Q G+ I+FPN D VRHHVYSFSPAKTFELKLYSGVP++P++FDK GTVVL Sbjct: 71 KTFIPLVTVIQAGSSIIFPNKDSVRHHVYSFSPAKTFELKLYSGVPSTPVVFDKAGTVVL 130 Query: 155 GCNIHDQMVAYVQVVNTPFFGKTDMSGRVKLDGLVNGKYALKAWYFKMAPNEAAMEQPIT 214 GCNIHDQM+A+V VV+TP+F KTD SG+VK+ + NG Y LK W++ + +++P++ Sbjct: 131 GCNIHDQMLAFVYVVDTPYFAKTDASGKVKIGDVPNGDYLLKVWHYALRKENVTVDKPVS 190 Query: 215 YQGAD 219 + AD Sbjct: 191 TKDAD 195 >ref|YP_003048528.1| hypothetical protein Mmol_1093 [Methylotenera mobilis JLW8] gb|ACT48001.1| conserved hypothetical protein [Methylotenera mobilis JLW8] Length = 196 Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 99/184 (53%), Positives = 126/184 (68%), Gaps = 1/184 (0%) Query: 36 ALFALLAAGAALNAAAATLTVQVLDIAGAPVPNAVVYAEAVGGQAVPKSLKQAEVEQKDV 95 A +L + + AA LTVQV D AG P+ NAVVY E + +L +A +EQK+ Sbjct: 4 AALSLFLLATSFQSHAADLTVQVNDQAGNPLSNAVVYLET-DVKPSHNALSEANIEQKNK 62 Query: 96 KFFPLVSVVQVGTPILFPNHDKVRHHVYSFSPAKTFELKLYSGVPTSPILFDKVGTVVLG 155 +F+P VSVVQVGT I FPN D VRHHVYSFSPAK FELKLYSGVP P++FDK GTV+LG Sbjct: 63 QFWPFVSVVQVGTSINFPNKDSVRHHVYSFSPAKVFELKLYSGVPAKPVVFDKPGTVILG 122 Query: 156 CNIHDQMVAYVQVVNTPFFGKTDMSGRVKLDGLVNGKYALKAWYFKMAPNEAAMEQPITY 215 CNIHD M+AY+ +V TP+FGK+D+ G VKL L +G++ LKAW++ EQ IT Sbjct: 123 CNIHDNMLAYIHIVETPYFGKSDVKGIVKLTDLPSGQHTLKAWHYATVKENFITEQKITI 182 Query: 216 QGAD 219 + + Sbjct: 183 KNNE 186 >ref|YP_004040647.1| hypothetical protein MPQ_2265 [Methylovorus sp. MP688] gb|ADQ85411.1| conserved hypothetical protein [Methylovorus sp. MP688] Length = 195 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 98/184 (53%), Positives = 131/184 (71%), Gaps = 2/184 (1%) Query: 46 ALNAAAATLTVQVLDIAGAPVPNAVVYAEAVGGQAVPKSLKQAEVEQKDVKFFPLVSVVQ 105 A + AA LT+ V D +G P+P+AVV+AE A+P A VEQK+ +F PLVSVVQ Sbjct: 7 AYSTWAAELTITVTDASGTPLPDAVVWAEPNTKLALPVP-GTAAVEQKNRQFLPLVSVVQ 65 Query: 106 VGTPILFPNHDKVRHHVYSFSPAKTFELKLYSGVPTSPILFDKVGTVVLGCNIHDQMVAY 165 GT + FPN DKV+HHVYSFSPAKTFELKLYSGVP++P++FDK GTVVLGCNIHDQM+A+ Sbjct: 66 TGTSVSFPNRDKVKHHVYSFSPAKTFELKLYSGVPSTPVVFDKAGTVVLGCNIHDQMLAF 125 Query: 166 VQVVNTPFFGKTDMSGRVKLDGLVNGKYALKAWYFKMAPNEAAMEQPITYQGADLHASVK 225 ++VV+TP+F +D +G+ L + NG Y L W++ + NE A+ + AD +VK Sbjct: 126 IRVVDTPYFALSDSTGKATLTNVPNGPYTLAVWHYAQS-NENALFEKAMVVKADEQTAVK 184 Query: 226 LNVK 229 L++ Sbjct: 185 LDIN 188 >ref|YP_003052076.1| hypothetical protein Msip34_2307 [Methylovorus glucosetrophus SIP3-4] gb|ACT51549.1| conserved hypothetical protein [Methylovorus glucosetrophus SIP3-4] Length = 209 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 98/184 (53%), Positives = 131/184 (71%), Gaps = 2/184 (1%) Query: 46 ALNAAAATLTVQVLDIAGAPVPNAVVYAEAVGGQAVPKSLKQAEVEQKDVKFFPLVSVVQ 105 A + AA LT+ V D +G P+P+AVV+AE A+P A VEQK+ +F PLVSVVQ Sbjct: 21 AYSTWAAELTITVTDASGTPLPDAVVWAEPNTKLALPVP-GTAAVEQKNRQFLPLVSVVQ 79 Query: 106 VGTPILFPNHDKVRHHVYSFSPAKTFELKLYSGVPTSPILFDKVGTVVLGCNIHDQMVAY 165 GT + FPN DKV+HHVYSFSPAKTFELKLYSGVP++P++FDK GTVVLGCNIHDQM+A+ Sbjct: 80 TGTSVSFPNRDKVKHHVYSFSPAKTFELKLYSGVPSTPVVFDKAGTVVLGCNIHDQMLAF 139 Query: 166 VQVVNTPFFGKTDMSGRVKLDGLVNGKYALKAWYFKMAPNEAAMEQPITYQGADLHASVK 225 ++VV+TP+F +D +G+ L + NG Y L W++ + NE A+ + AD +VK Sbjct: 140 IRVVDTPYFALSDSTGKATLTNVPNGPYTLAVWHYAQS-NENALFEKAMVIKADEQTAVK 198 Query: 226 LNVK 229 L++ Sbjct: 199 LDIN 202