BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0011.p (189 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776106.1| transcription regulator protein [Herbaspiril... 285 3e-75 ref|ZP_06685188.1| transcriptional regulatory protein [Achromoba... 160 9e-38 ref|ZP_07044034.1| probable Kregulator, TetR family protein [Com... 157 7e-37 gb|EFV82341.1| transcriptional regulator [Achromobacter xylosoxi... 156 1e-36 ref|YP_003976131.1| TetR family transcriptional regulator [Achro... 155 2e-36 >ref|YP_003776106.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64198.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 285 bits (728), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 138/189 (73%), Positives = 162/189 (85%) Query: 1 MVDTILDAMARVLVDRGYAKTNTNLVAEAAGISVGSLYQYFPNKDALIFALRERHVARML 60 MVDTILDAM+RVLV+RGYAKTNTNLVAE+AGISVGSLYQYFPNKDALIFALRERH RML Sbjct: 17 MVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNKDALIFALRERHATRML 76 Query: 61 QLFEEVVAKMDASGSLVRDFEALIEALVAAHLVEPELNRILEEEFPSFHLPVSNHVRQRF 120 LFE+ VA +D +G+L DF+ +I A+VAAHL+EPELNRILEEEFP+++LPVS +RQ F Sbjct: 77 ALFEDAVAHIDDAGTLSSDFDQVISAVVAAHLLEPELNRILEEEFPAYNLPVSTEIRQGF 136 Query: 121 FEAIRGVLIKHRKSISAPDVDVAAFVVQRMLKALVNAVVLIAPPGLNAASVRSEIVPAVV 180 FEAI VL KHR SI+ PD+D+AAFV+QRMLKAL+ AVVL P G+ SVRSEI+PAV+ Sbjct: 137 FEAIHRVLEKHRDSITTPDLDLAAFVLQRMLKALIKAVVLTGPGGVPPGSVRSEILPAVI 196 Query: 181 GYLTAQRSN 189 GYLT RS+ Sbjct: 197 GYLTLPRSD 205 >ref|ZP_06685188.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC 43553] gb|EFF77978.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC 43553] Length = 259 Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 123/183 (67%), Gaps = 2/183 (1%) Query: 2 VDTILDAMARVLVDRGYAKTNTNLVAEAAGISVGSLYQYFPNKDALIFALRERHVARMLQ 61 VDTIL A ARVL GYA TNTNL+AE AG+SVGSLYQYFPNK+ALI AL +RH +ML Sbjct: 20 VDTILQATARVLAAHGYAGTNTNLIAETAGVSVGSLYQYFPNKNALIAALHQRHDNQMLD 79 Query: 62 LFEEVVAKMDASGSLVRDFEALIEALVAAHLVEPELNRILEEEFPSFHLPVSNHV-RQRF 120 + ++V+ + + +L A+++A++ AHL+EP L+R+LE EFP F +P + + Q Sbjct: 80 VIDDVL-NSNPAATLKERVAAIVQAMLHAHLLEPALHRVLEREFPLFDIPGDHSLADQDI 138 Query: 121 FEAIRGVLIKHRKSISAPDVDVAAFVVQRMLKALVNAVVLIAPPGLNAASVRSEIVPAVV 180 +R +L HR I+ D D+A +VV R++++LV+A+ L P G + + +V AV+ Sbjct: 139 HRRMRHLLELHRAEIAQQDRDLATYVVLRIMESLVHAMALEPPAGFDTRQLEQSVVDAVM 198 Query: 181 GYL 183 GYL Sbjct: 199 GYL 201 >ref|ZP_07044034.1| probable Kregulator, TetR family protein [Comamonas testosteroni S44] gb|EFI62343.1| probable Kregulator, TetR family protein [Comamonas testosteroni S44] Length = 191 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 88/188 (46%), Positives = 121/188 (64%), Gaps = 6/188 (3%) Query: 1 MVDTILDAMARVLVDRGYAKTNTNLVAEAAGISVGSLYQYFPNKDALIFALRERHVARML 60 MVD IL+A ARVL +RGYA TNTNLVAE AG+SVGS+YQYFPNKD+LI AL ERH M Sbjct: 1 MVDAILEATARVLSERGYAGTNTNLVAERAGVSVGSVYQYFPNKDSLITALHERHAVEMH 60 Query: 61 QLFEEVVAKMDASGSLVRDFEALIEALVAAHLVEPELNRILEEEFPSFHLPV-SNHVRQR 119 E V+A + G L R A++ A +AAH V PEL+++LE+EFP F P + Q Sbjct: 61 AAMETVLAGTTSPGLLER-LAAIVHAWLAAHQVAPELHQVLEKEFPFFDAPSDQSEADQS 119 Query: 120 FFEAIRGVLIKHRKSISAPDVDVAAFVVQRMLKALVNAVVLIAPPGLNAASVRSE--IVP 177 IR +L +HR + D+++A ++V R +++L++A V+ PPG ++E IV Sbjct: 120 IHCRIRQLLEEHRDEVVQEDLNLATWIVLRTMESLIHAAVI--PPGTPHPIQKTEQAIVE 177 Query: 178 AVVGYLTA 185 ++GYL Sbjct: 178 ILIGYLCG 185 >gb|EFV82341.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 210 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/184 (47%), Positives = 122/184 (66%), Gaps = 4/184 (2%) Query: 2 VDTILDAMARVLVDRGYAKTNTNLVAEAAGISVGSLYQYFPNKDALIFALRERHVARMLQ 61 VDTIL A ARVL + GYA TNTN +AE AG+SVGSLYQYFPNK+ALI AL +RH +ML Sbjct: 20 VDTILQATARVLAEYGYAGTNTNRIAETAGVSVGSLYQYFPNKNALIAALHDRHDKQMLA 79 Query: 62 LFEEVVAKMDASGSLVRDFEALIEALVAAHLVEPELNRILEEEFPSFHLPVSNHVR--QR 119 L +EV+ + + +L A++ A + AHL+EP L+R+LE EFP F P +H R Q Sbjct: 80 LIDEVL-DGNPAATLRERVAAIVAASLRAHLLEPALHRVLEREFPLFDQP-RDHSRADQD 137 Query: 120 FFEAIRGVLIKHRKSISAPDVDVAAFVVQRMLKALVNAVVLIAPPGLNAASVRSEIVPAV 179 +R +L HR+ I+ D ++A +VV R++++LV+AV L P G + + +V AV Sbjct: 138 IHRRMRHLLELHREEIAQQDRELATYVVLRIMESLVHAVALEPPAGFDPRQLEGAVVDAV 197 Query: 180 VGYL 183 +GYL Sbjct: 198 MGYL 201 >ref|YP_003976131.1| TetR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP13416.1| bacterial regulatory protein, TetR family protein 1 [Achromobacter xylosoxidans A8] Length = 216 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/184 (46%), Positives = 119/184 (64%), Gaps = 4/184 (2%) Query: 2 VDTILDAMARVLVDRGYAKTNTNLVAEAAGISVGSLYQYFPNKDALIFALRERHVARMLQ 61 V+TIL A ARVL GYA TNTNL+AE AG+SVGSLYQYFPNK+ALI AL RH +ML Sbjct: 20 VETILQATARVLATHGYAGTNTNLIAETAGVSVGSLYQYFPNKNALIAALHNRHDNQMLD 79 Query: 62 LFEEVVAKMDASGSLVRDFEALIEALVAAHLVEPELNRILEEEFPSFHLPVSNHVR--QR 119 + + V+ + + +L A++EA++ AH++EP L+R+LE EFP F P H R Q Sbjct: 80 VIDGVL-DSNPAATLRERVAAIVEAMLHAHMLEPALHRVLEREFPLFDQP-HEHSRADQD 137 Query: 120 FFEAIRGVLIKHRKSISAPDVDVAAFVVQRMLKALVNAVVLIAPPGLNAASVRSEIVPAV 179 +R +L HR I+ D D+A +VV R++++LV+A L P G + + +V AV Sbjct: 138 IHRRMRHLLELHRAEIAQQDRDLATYVVLRIMESLVHAAALEPPAGFSTQQLEQAVVDAV 197 Query: 180 VGYL 183 +GYL Sbjct: 198 MGYL 201