BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0047.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775897.1| two component hybrid sensor histidine kinase...   158   3e-37
ref|YP_632059.1| sensory box sensor histidine kinase/response re...   100   5e-20
ref|YP_001861530.1| PAS/PAC sensor hybrid histidine kinase [Burk...   100   1e-19
ref|ZP_01465884.1| PAS sensor Signal Tranduction Histidine Kinas...    96   1e-18
ref|YP_004668486.1| sensory box sensor histidine kinase/response...    96   2e-18

>ref|YP_003775897.1| two component hybrid sensor histidine kinase/response regulator
            protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63989.1| two component hybrid sensor histidine kinase/response regulator
            protein [Herbaspirillum seropedicae SmR1]
          Length = 1278

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/119 (64%), Positives = 91/119 (76%)

Query: 11   QADAAGLHILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQHDFDVLFTDVSL 70
            Q DA GL +LVVEDN+DS QLVCELL  LGH+A GV S EEAL  LE+  FDVLFTDV+L
Sbjct: 1158 QEDAGGLRLLVVEDNIDSQQLVCELLETLGHQARGVISGEEALQALEEQGFDVLFTDVNL 1217

Query: 71   PGMSGLELAKRTSEKTPALKIIFASGYGAQISKNIGPGTFSLPKPYDIDQLQDILDNIG 129
            PGMSG+ELAK    + P L +IFASGYG  +++N+G    +LPKPYDIDQLQ+ILD I 
Sbjct: 1218 PGMSGVELAKAALGRFPDLAVIFASGYGTMVARNVGFAAHALPKPYDIDQLQEILDKIA 1276


>ref|YP_632059.1| sensory box sensor histidine kinase/response regulator [Myxococcus
           xanthus DK 1622]
 gb|ABF87284.1| sensory box sensor histidine kinase/response regulator [Myxococcus
           xanthus DK 1622]
          Length = 862

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 3/125 (2%)

Query: 4   SVSSMPDQADAAGLHILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQHDFDV 63
           + +  P +    GL IL+VED+ + L  VCELL  +GH    V  AEEA   L   +FD+
Sbjct: 733 ATTPAPARVKQTGLRILLVEDDENILLPVCELLETMGHTVTAVACAEEATPLLRTQEFDL 792

Query: 64  LFTDVSLPGMSGLELAKRTSEKTPALKIIFASGYGAQISKNI-GP--GTFSLPKPYDIDQ 120
           LFTDVSLPG SG+ELA +  +  P L++I ASG+GA +     GP      LPKPY + Q
Sbjct: 793 LFTDVSLPGKSGIELAHQAVQDVPGLRVIIASGHGANVDIGAKGPLDSAVILPKPYGLSQ 852

Query: 121 LQDIL 125
           ++  L
Sbjct: 853 IEQAL 857


>ref|YP_001861530.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
 gb|ACC74484.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
          Length = 815

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 73/112 (65%), Gaps = 1/112 (0%)

Query: 17  LHILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQHDFDVLFTDVSLPGMSGL 76
           L ILVVED  D+   +CEL+A+LGH  E  GSAEEAL  L+   FDVL TD++LPGMSG 
Sbjct: 702 LRILVVEDERDARDALCELIAMLGHTFEAAGSAEEALERLQLRPFDVLLTDLTLPGMSGF 761

Query: 77  ELAKRTSEKTPALKIIFASGYGAQISKNIGPGTFS-LPKPYDIDQLQDILDN 127
           ELA+       A +++F+SG  A +S    P  ++ L KPY  DQL+D LD+
Sbjct: 762 ELARAAVALRAAQRVVFSSGLDATVSDASLPFAWTALRKPYSFDQLKDALDS 813


>ref|ZP_01465884.1| PAS sensor Signal Tranduction Histidine Kinase [Stigmatella
           aurantiaca DW4/3-1]
 ref|YP_003954077.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gb|EAU63343.1| PAS sensor Signal Tranduction Histidine Kinase [Stigmatella
           aurantiaca DW4/3-1]
 gb|ADO72250.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 853

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 74/135 (54%), Gaps = 12/135 (8%)

Query: 1   MTTSVSSMPDQADAAGLHILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQHD 60
           +T    S+P  A     H+L+VED+        ELL VLGHR   V SAEEA A L    
Sbjct: 716 LTAGGGSLP--AAKGSRHVLLVEDDEAIRTSALELLDVLGHRVLAVASAEEARAALATDH 773

Query: 61  FDVLFTDVSLPGMSGLELAKRTSEKTPALKIIFASGYGAQISKNIGP---GTFSLPKPYD 117
           FD+LFTDVSLPG SG+ELA+    + P L++I ASGYG  ++   G        LPKPYD
Sbjct: 774 FDILFTDVSLPGQSGVELAREAVHQYPRLQVIIASGYGVTLTPGEGALLGSAVLLPKPYD 833

Query: 118 IDQLQDILDNIGRQL 132
                  L  IGR L
Sbjct: 834 -------LAGIGRAL 841


>ref|YP_004668486.1| sensory box sensor histidine kinase/response regulator [Myxococcus
           fulvus HW-1]
 gb|AEI67408.1| sensory box sensor histidine kinase/response regulator [Myxococcus
           fulvus HW-1]
          Length = 859

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 73/119 (61%), Gaps = 5/119 (4%)

Query: 14  AAGLHILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQHDFDVLFTDVSLPGM 73
           A  L IL+VED+ +     CELL  LGH    V SAEEA+  L+ + F++LFTDVSLPG 
Sbjct: 740 APALRILLVEDDENIRLPACELLETLGHTVTAVISAEEAIPLLDSNAFELLFTDVSLPGQ 799

Query: 74  SGLELAKRTSEKTPALKIIFASGYGAQISKNIGPGTFS----LPKPYDIDQLQDILDNI 128
           SG+ELA    +K P L++I ASG+G  +    G GT      LPKPY + Q++  L ++
Sbjct: 800 SGIELALHAVQKLPRLRVIIASGHGTHVDTG-GSGTLDGAVLLPKPYGLSQIEQALAHV 857