BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0045.p (479 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_367032.1| cytochrome c, class I [Burkholderia sp. 383] >g... 566 e-159 ref|YP_001005684.1| putative dehydrogenase, cytochrome C subunit... 562 e-158 ref|YP_004502472.1| gluconate 2-dehydrogenase [Serratia sp. AS12... 543 e-152 ref|ZP_06193148.1| hypothetical protein SOD_j00990 [Serratia odo... 541 e-151 ref|YP_002546689.1| Cytochrome c, mono- and diheme variant [Agro... 536 e-150 >ref|YP_367032.1| cytochrome c, class I [Burkholderia sp. 383] gb|ABB06388.1| Cytochrome c, class I [Burkholderia sp. 383] Length = 501 Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 281/461 (60%), Positives = 340/461 (73%), Gaps = 8/461 (1%) Query: 19 APASPASSPAQAGSAQNDIESGRYLAIAADCMACHTA-PAGKPYAGGYAIESPLGTIYAT 77 APA AS+ A A +E G LAIAADCMACHTA GKP+AGGY I SP+G IY++ Sbjct: 39 APAGTASTSADAAL----VEKGHQLAIAADCMACHTALDGGKPFAGGYGIASPMGQIYSS 94 Query: 78 NITPSKAAGIGNYSEAQFARALREGVRADGSHLYPAMPYTSYAMLTDSDVHKLYSYFMHA 137 NITPSK AGIGNY+EAQFARALREGVRADG++LYPAMPYTSY+ L+D+DVH LYSYFM A Sbjct: 95 NITPSKTAGIGNYTEAQFARALREGVRADGAYLYPAMPYTSYSGLSDADVHALYSYFMQA 154 Query: 138 VEPVDTPAASRTQLPFPFNVRMSMLAWNAIFLDTKRFVPDAARSQQINRGQYLAEGLAHC 197 V+PVD AA T LPFPF +RM+M WN +FL KRF D A Q NRG YL LAHC Sbjct: 155 VKPVDE-AAPATNLPFPFGMRMAMAGWNMLFLSNKRFEADPAHDAQWNRGAYLTNVLAHC 213 Query: 198 SACHTPRNFLMGEKGGSALAGAPLGSWHAPNITSDKVSGVGGWSDAELMQYLKTGHAEGK 257 SACHTPRN LM E G L GA LG+W+APNITSD VSG+G W+D EL+ YLKTG A GK Sbjct: 214 SACHTPRNALMAEDFGRNLGGAQLGAWYAPNITSDPVSGIGAWTDDELVSYLKTGRAAGK 273 Query: 258 GQAGGAMAEAVTNSFQHLRDDDVAAIVAYLRTVPPVRDNAQAQPAYSYGKAASDEAVLRG 317 QA G MAEAV NS Q+L D D+ +IV+YLR+ P+RD ++ PA+SYG+A S EA LRG Sbjct: 274 NQAAGPMAEAVQNSLQYLSDADLKSIVSYLRSTKPIRDEGESVPAFSYGRAISSEATLRG 333 Query: 318 TSGPNEHDSLNSGAVLFSGYCASCHAASGSGSSGQDYPSLFHNTTTGARNPANLVSAILF 377 S N + +L +GA LFSGYCASCH A+G GS Q YPSL +NT TG+RNP+NL++AIL+ Sbjct: 334 ASALNANGTLTTGAALFSGYCASCHQANGKGSPSQAYPSLSNNTATGSRNPSNLIAAILY 393 Query: 378 GVERKVGDNEILMPRFDGHSYVNPLTDKQIALIANYVLKQYGNPEVQVSEAYVAQARNGG 437 GV+R+VG +LMP F SYV PL D Q+A IANYVL+QYGNP+V V+ VA AR+GG Sbjct: 394 GVDREVGGEHVLMPSFGEESYVQPLKDDQVAAIANYVLEQYGNPDVTVTADDVAVARSGG 453 Query: 438 EQPVLARLQPFIAPAIGVAILLLLLTAVAVFMARRRRRIPF 478 P+L R++P + P G A+++L+ VF RRR+R+P Sbjct: 454 PVPLLVRVRPLMLP--GAALVVLIAILGVVFWRRRRQRVPL 492 >ref|YP_001005684.1| putative dehydrogenase, cytochrome C subunit [Yersinia enterocolitica subsp. enterocolitica 8081] emb|CAL11460.1| putative dehydrogenase, cytochrome C subunit [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 473 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 272/445 (61%), Positives = 327/445 (73%), Gaps = 4/445 (0%) Query: 32 SAQNDIESGRYLAIAADCMACHTAP-AGKPYAGGYAIESPLGTIYATNITPSKAAGIGNY 90 S Q IE G +AIA+DC ACHT P GKP+ GGY I SP+G IY+TNITPS GIG Y Sbjct: 29 SEQQWIEKGEQVAIASDCQACHTKPEGGKPFTGGYGISSPMGMIYSTNITPSTVDGIGKY 88 Query: 91 SEAQFARALREGVRADGSHLYPAMPYTSYAMLTDSDVHKLYSYFMHAVEPVDTPAASRTQ 150 SEA+FARA+R+G+RADGSHLYPAMPYTSY L+D D+H LY YFMHAV +D T+ Sbjct: 89 SEAEFARAVRDGIRADGSHLYPAMPYTSYTKLSDEDIHALYVYFMHAVPAIDEENIP-TE 147 Query: 151 LPFPFNVRMSMLAWNAIFLDTKRFVPDAARSQQINRGQYLAEGLAHCSACHTPRNFLMGE 210 LPFPFN+R +ML WN +FLD RF PD+++S Q NRG YL G HC CHTPRN LMGE Sbjct: 148 LPFPFNMRFAMLGWNMMFLDKGRFEPDSSKSDQWNRGAYLVNGPGHCDTCHTPRNLLMGE 207 Query: 211 KGGSALAGAPLGSWHAPNITSDKVSGVGGWSDAELMQYLKTGHAEGKGQAGGAMAEAVTN 270 G+A AG +G W+APNITSD +SG+GGWS+A+L++YLKTG GK QA G MAEAV N Sbjct: 208 DTGNAFAGGMVGPWYAPNITSDAISGIGGWSNAQLVEYLKTGRVAGKNQAAGGMAEAVQN 267 Query: 271 SFQHLRDDDVAAIVAYLRTVPPVRDNAQAQPAYSYGKAASDEAVLRGTSGPNEHDSLNSG 330 S Q+L + D+ AI YL++ PVRD QPA S+GKA + E LRG +++L+SG Sbjct: 268 SLQYLPESDLQAIALYLKSTTPVRDPQDTQPADSFGKALNVEISLRGQHPSTANNTLDSG 327 Query: 331 AVLFSGYCASCHAASGSGSSGQDYPSLFHNTTTGARNPANLVSAILFGVERKVGDNEILM 390 A LFSG CASCH GSGS Q YPSLF+NT TG+ NPANLVSAILFGV+RKVGD ILM Sbjct: 328 AALFSGNCASCHQPDGSGSKNQAYPSLFNNTATGSSNPANLVSAILFGVDRKVGDEHILM 387 Query: 391 PRFDGHSYVNPLTDKQIALIANYVLKQYGNPEVQVSEAYVAQARNGGEQPVLARLQPFIA 450 P F SYVNPL DKQIALIANYVL YGNP V VSEA VA+ R GG P+LARLQ ++A Sbjct: 388 PNFGPQSYVNPLNDKQIALIANYVLHSYGNPAVTVSEADVAELRAGGPVPLLARLQLYMA 447 Query: 451 PAIGVAILLLLLTAVAVFMARRRRR 475 PA+ A+++LL A+ + + R+RR+ Sbjct: 448 PAMIAAVMVLL--ALILVLGRKRRK 470 >ref|YP_004502472.1| gluconate 2-dehydrogenase [Serratia sp. AS12] ref|YP_004507424.1| gluconate 2-dehydrogenase [Serratia sp. AS9] gb|AEF47163.1| Gluconate 2-dehydrogenase (acceptor) [Serratia sp. AS9] gb|AEF52115.1| Gluconate 2-dehydrogenase (acceptor) [Serratia sp. AS12] gb|AEG29822.1| Gluconate 2-dehydrogenase (acceptor) [Serratia sp. AS13] Length = 462 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 258/440 (58%), Positives = 321/440 (72%), Gaps = 5/440 (1%) Query: 37 IESGRYLAIAADCMACHTAPAG-KPYAGGYAIESPLGTIYATNITPSKAAGIGNYSEAQF 95 ++ G LA+A+DC ACHT P G KP+AGGY I SP+G IY+TNITPS GIG Y+E QF Sbjct: 27 LKQGEQLAVASDCQACHTQPGGGKPFAGGYGINSPMGVIYSTNITPSAQDGIGGYTEQQF 86 Query: 96 ARALREGVRADGSHLYPAMPYTSYAMLTDSDVHKLYSYFMHAVEPVDTPAASRTQLPFPF 155 ARALR+GVRADGS+LYPAMPYTSY+ L+D+D+H LY+YFM V+PV+ + T LPFPF Sbjct: 87 ARALRDGVRADGSYLYPAMPYTSYSKLSDADIHALYTYFMQGVKPVEQ-KNTPTALPFPF 145 Query: 156 NVRMSMLAWNAIFLDTKRFVPDAARSQQINRGQYLAEGLAHCSACHTPRNFLMGEKGGSA 215 N+R SM WN +FLD RF P+A +++Q NRG YL G HC CHTPRN LM E Sbjct: 146 NMRFSMAGWNLLFLDKNRFQPNAEKTEQWNRGAYLVNGPGHCDTCHTPRNLLMAESADKP 205 Query: 216 LAGAPLGSWHAPNITSDKVSGVGGWSDAELMQYLKTGHAEGKGQAGGAMAEAVTNSFQHL 275 LAG +GSW+APNITSD VSG+GGWS+ EL+QYLKTG GK QA G MAEAV NS Q+L Sbjct: 206 LAGGMVGSWYAPNITSDAVSGIGGWSNEELVQYLKTGRVAGKNQAAGGMAEAVENSLQYL 265 Query: 276 RDDDVAAIVAYLRTVPPVRDNAQAQPAYSYGKAASDEAVLRGTSGPNEHDSLNSGAVLFS 335 + D+ AI YL++ P+RD Q A +G+ + E LRG N +++++ GA LFS Sbjct: 266 PEQDLMAIAVYLKSTVPIRDAQDKQAADRFGQPLNVEPTLRGLHPSNANNTVSDGAALFS 325 Query: 336 GYCASCHAASGSGSSGQDYPSLFHNTTTGARNPANLVSAILFGVERKVGDNEILMPRFDG 395 G CASCH GSGS Q YPSLF+NT TG+ NPANL+SAILFGV+RK G ++LMP F Sbjct: 326 GNCASCHQPDGSGSKNQAYPSLFNNTATGSGNPANLISAILFGVQRKAGSEDVLMPNFGP 385 Query: 396 HSYVNPLTDKQIALIANYVLKQYGNPEVQVSEAYVAQARNGGEQPVLARLQPFIAPAIGV 455 SYVNPLTD+QIA I+NYVLK YGNPEV VSE VA R GG P+LA+LQP++APAIGV Sbjct: 386 QSYVNPLTDRQIAAISNYVLKNYGNPEVTVSEEDVAMLRTGGPVPLLAKLQPYMAPAIGV 445 Query: 456 AILLLLLTAVAVFMARRRRR 475 A+++LL +++ R+R+ Sbjct: 446 AVVVLL---ALIWLCGRKRK 462 >ref|ZP_06193148.1| hypothetical protein SOD_j00990 [Serratia odorifera 4Rx13] gb|EFA14282.1| hypothetical protein SOD_j00990 [Serratia odorifera 4Rx13] Length = 462 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 258/440 (58%), Positives = 320/440 (72%), Gaps = 5/440 (1%) Query: 37 IESGRYLAIAADCMACHTAPAG-KPYAGGYAIESPLGTIYATNITPSKAAGIGNYSEAQF 95 ++ G LA+A+DC ACHT P G KP+AGGY I SP+G IY+TNITPS GIG Y+E QF Sbjct: 27 LKQGEQLAVASDCQACHTQPGGGKPFAGGYGINSPMGVIYSTNITPSAHDGIGGYTEQQF 86 Query: 96 ARALREGVRADGSHLYPAMPYTSYAMLTDSDVHKLYSYFMHAVEPVDTPAASRTQLPFPF 155 ARALR+GVRADGS+LYPAMPYTSY+ L+D+D+H LY+YFM V+PV+ + T LPFPF Sbjct: 87 ARALRDGVRADGSYLYPAMPYTSYSKLSDADIHALYTYFMQGVKPVEQ-KNTPTALPFPF 145 Query: 156 NVRMSMLAWNAIFLDTKRFVPDAARSQQINRGQYLAEGLAHCSACHTPRNFLMGEKGGSA 215 N+R SM WN +FLD RF P+A +S+Q NRG YL G HC CHTPRN LM E Sbjct: 146 NMRFSMAGWNLLFLDKNRFQPNAEKSEQWNRGAYLVNGPGHCDTCHTPRNLLMAESADKP 205 Query: 216 LAGAPLGSWHAPNITSDKVSGVGGWSDAELMQYLKTGHAEGKGQAGGAMAEAVTNSFQHL 275 LAG +GSW+APNITSD VSG+GGWS+ EL+QYLKTG GK QA G MAEAV NS Q+L Sbjct: 206 LAGGMVGSWYAPNITSDAVSGIGGWSNEELVQYLKTGRVAGKNQAAGGMAEAVENSLQYL 265 Query: 276 RDDDVAAIVAYLRTVPPVRDNAQAQPAYSYGKAASDEAVLRGTSGPNEHDSLNSGAVLFS 335 + D+ AI YL++ P+RD Q A +G+ + E LRG N +++++ GA LFS Sbjct: 266 PEQDLMAIAVYLKSTVPIRDAQDKQAADRFGQPLNVEPTLRGLHPSNANNTVSDGAALFS 325 Query: 336 GYCASCHAASGSGSSGQDYPSLFHNTTTGARNPANLVSAILFGVERKVGDNEILMPRFDG 395 G CASCH GSGS Q YPSLF+NT TG+ NPANL+SAILFGV+RK G ++LMP F Sbjct: 326 GNCASCHQPDGSGSKNQAYPSLFNNTATGSGNPANLISAILFGVQRKAGSEDVLMPNFGP 385 Query: 396 HSYVNPLTDKQIALIANYVLKQYGNPEVQVSEAYVAQARNGGEQPVLARLQPFIAPAIGV 455 SYVNPLTD+QIA I+NYVLK YGNP V VSE VA R GG P+LA+LQP++APAIGV Sbjct: 386 QSYVNPLTDRQIAAISNYVLKNYGNPAVTVSEEDVAMLRTGGPVPLLAKLQPYMAPAIGV 445 Query: 456 AILLLLLTAVAVFMARRRRR 475 A+++LL +++ R+R+ Sbjct: 446 AVVVLL---ALIWLCGRKRK 462 >ref|YP_002546689.1| Cytochrome c, mono- and diheme variant [Agrobacterium radiobacter K84] gb|ACM31225.1| Cytochrome c, mono- and diheme variant [Agrobacterium radiobacter K84] Length = 485 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 254/449 (56%), Positives = 323/449 (71%), Gaps = 3/449 (0%) Query: 28 AQAGSAQNDIESGRYLAIAADCMACHTAP-AGKPYAGGYAIESPLGTIYATNITPSKAAG 86 AQ Q +E GR +A AADCMACHT P + +P+AGGY I SPLGTIY+TNITPSK AG Sbjct: 33 AQISDPQALVEKGRGIATAADCMACHTVPHSNRPFAGGYPIVSPLGTIYSTNITPSKTAG 92 Query: 87 IGNYSEAQFARALREGVRADGSHLYPAMPYTSYAMLTDSDVHKLYSYFMHAVEPVDTPAA 146 IGNY+E F RA+R+G+R DG HLYPAMPYT+YA +TD+D+H LY+YFM+ VEPVD AA Sbjct: 93 IGNYTEDDFDRAVRKGIRKDGGHLYPAMPYTAYAEITDADMHALYAYFMNGVEPVDDKAA 152 Query: 147 SRTQLPFPFNVRMSMLAWNAIFLDTKRFVPDAARSQQINRGQYLAEGLAHCSACHTPRNF 206 ++T LPFPFN+R SM+ WN ++ F PD +++++INRG YLA L HCS+CH+PR Sbjct: 153 NQTDLPFPFNIRFSMMFWNLLYSTKVPFQPDPSKTEEINRGAYLAGALGHCSSCHSPRGL 212 Query: 207 LMGEKGGSALAGAPLGSWHAPNITSDKVSGVGGWSDAELMQYLKTGHAEGKGQAGGAMAE 266 LMGE GS LAG +G W+APNITSD VSG+GGWS EL+QY + GHA+GK QA G MAE Sbjct: 213 LMGESAGSYLAGGAVGPWYAPNITSDPVSGIGGWSTDELVQYFRDGHADGKNQAAGGMAE 272 Query: 267 AVTNSFQHLRDDDVAAIVAYLRTVPPVRDNAQAQPAYSYGKAASDEAVLRGTSGPNEHDS 326 AV NS Q+L D D+ A+ +YL++VP +RD + A+ YG A S E+ +RG EH+S Sbjct: 273 AVQNSLQYLPDADLHALASYLKSVPAIRDPGDTRAAHEYGAAVSSESSIRGAYSQTEHNS 332 Query: 327 LNSGAVLFSGYCASCHAASGSGSSGQDYPSLFHNTTTGARNPANLVSAILFGVERKVGDN 386 L +GA L+SGYCASCH G+GS YPSLFHN+ TGA PANLV+ IL+GV+R+ Sbjct: 333 LRNGAQLYSGYCASCHRIDGAGSENHAYPSLFHNSATGASQPANLVATILYGVDRETAGK 392 Query: 387 EILMPRFDGHSYVNPLTDKQIALIANYVLKQYGNPEVQVSEAYVAQARNGGEQPVLARLQ 446 ++LMP F SYV PLTD+QI ++NYVL +GNP +V+ A VA AR GG P LAR+Q Sbjct: 393 QVLMPGFGAQSYVTPLTDQQIVDVSNYVLMNFGNPATKVTLADVAIARTGGPVPFLARVQ 452 Query: 447 PFIAPAIGVAILLLLLTAVAVFMARRRRR 475 P+I I + ++LL VA F R+RR Sbjct: 453 PYILTVILSLVAIVLL--VAAFWVLRKRR 479