BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0043.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004502470.1| putative dehydrogenase subunit [Serratia sp.... 147 1e-33 ref|ZP_06193146.1| sorbitol dehydrogenase small subunit [Serrati... 147 2e-33 ref|YP_001005686.1| putative dehydrogenase subunit [Yersinia ent... 132 4e-29 ref|YP_001478040.1| putative dehydrogenase subunit [Serratia pro... 130 1e-28 ref|YP_367034.1| hypothetical protein Bcep18194_C7346 [Burkholde... 130 1e-28 >ref|YP_004502470.1| putative dehydrogenase subunit [Serratia sp. AS12] ref|YP_004507422.1| putative dehydrogenase subunit [Serratia sp. AS9] gb|AEF47161.1| putative dehydrogenase subunit [Serratia sp. AS9] gb|AEF52113.1| putative dehydrogenase subunit [Serratia sp. AS12] gb|AEG29820.1| putative dehydrogenase subunit [Serratia sp. AS13] Length = 187 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 74/168 (44%), Positives = 98/168 (58%), Gaps = 6/168 (3%) Query: 26 GISRRHVLIGLAALVAEAGFWSNPLFSNAQTPAVPAAAPPPSPEALA-FLNFSKRITGHA 84 G RR VL G+A+++ P + A+ A +P A F S+ IT H Sbjct: 18 GFRRRDVLFGMASVLVATSLLGYPFLTQAEQQTAAA-----NPLVFARFFTLSRTITEHQ 72 Query: 85 DLKTDTGVRIEAAMRKTYPDFAAQSARLGALLQDGQEPKALLAAATDAGLRDLTLAIVAA 144 D+ RI A+ + P+F+AQ +L ALLQ Q K L A AGL+DL AI++A Sbjct: 73 DIDQGMSARIFTALSDSIPNFSAQIKQLSALLQPEQSAKQLQTLAIQAGLQDLLTAIISA 132 Query: 145 WYTGTIGKGKQAVVVSYAEALMYRPVSDGQTVPTYCNYGPVWWTKAPP 192 WYTGT+G G+QAV+++Y +ALMYRP SD VPTYC GP+WWT APP Sbjct: 133 WYTGTVGHGQQAVLIAYKDALMYRPASDALIVPTYCGNGPLWWTAAPP 180 >ref|ZP_06193146.1| sorbitol dehydrogenase small subunit [Serratia odorifera 4Rx13] gb|EFA14280.1| sorbitol dehydrogenase small subunit [Serratia odorifera 4Rx13] Length = 187 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/168 (44%), Positives = 98/168 (58%), Gaps = 6/168 (3%) Query: 26 GISRRHVLIGLAALVAEAGFWSNPLFSNAQTPAVPAAAPPPSPEALA-FLNFSKRITGHA 84 G RR VL G+A+++ P + A+ A +P A F S+ IT H Sbjct: 18 GFRRRDVLFGMASVLVATSLLGYPFLTQAEQQTAAA-----NPLVFARFFTLSRTITEHQ 72 Query: 85 DLKTDTGVRIEAAMRKTYPDFAAQSARLGALLQDGQEPKALLAAATDAGLRDLTLAIVAA 144 D+ RI A+ + P+F+AQ +L ALLQ Q K L A AGL+DL AI++A Sbjct: 73 DIDQGMSARIFTALSDSIPNFSAQIKQLSALLQPEQSAKQLQTLAIQAGLQDLLTAIISA 132 Query: 145 WYTGTIGKGKQAVVVSYAEALMYRPVSDGQTVPTYCNYGPVWWTKAPP 192 WYTGT+G G+QAV+++Y +ALMYRP SD VPTYC GP+WWT APP Sbjct: 133 WYTGTVGHGQQAVLIAYKDALMYRPASDALIVPTYCGNGPLWWTAAPP 180 >ref|YP_001005686.1| putative dehydrogenase subunit [Yersinia enterocolitica subsp. enterocolitica 8081] emb|CAL11462.1| putative dehydrogenase subunit [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 193 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 73/176 (41%), Positives = 101/176 (57%), Gaps = 6/176 (3%) Query: 26 GISRRHVLIGLAALVAEAGFWSNPLFSNAQTPAVPAAAPPPSPEALA-FLNFSKRITGHA 84 G +RR +L+GLA+ + P + A+ A +P A A F S+ +T H Sbjct: 18 GFTRRELLVGLASTMVATSLLGYPFLTQAEQQTAAA-----NPLAFAQFFTLSQTLTEHQ 72 Query: 85 DLKTDTGVRIEAAMRKTYPDFAAQSARLGALLQDGQEPKALLAAATDAGLRDLTLAIVAA 144 D+ RI A+ + F++Q ++L AL+QDGQ + L A A L+ AIVAA Sbjct: 73 DIDQGMSARIFTALHNSDKQFSSQISQLTALMQDGQSAQQLQALAQQHQLQKTVSAIVAA 132 Query: 145 WYTGTIGKGKQAVVVSYAEALMYRPVSDGQTVPTYCNYGPVWWTKAPPAIRVSAPV 200 WYTGT+G G+QAV+++Y +ALMYRP SD VPTYC GP+WWT PP I + PV Sbjct: 133 WYTGTVGHGQQAVLIAYKDALMYRPASDALVVPTYCGNGPLWWTATPPDINLPKPV 188 >ref|YP_001478040.1| putative dehydrogenase subunit [Serratia proteamaculans 568] gb|ABV40912.1| putative dehydrogenase subunit [Serratia proteamaculans 568] Length = 186 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/173 (44%), Positives = 100/173 (57%), Gaps = 6/173 (3%) Query: 26 GISRRHVLIGLAALVAEAGFWSNPLFSNAQTPAVPAAAPPPSPEALA-FLNFSKRITGHA 84 G SRR VL+GLA+ + + S P S A+ A +P A F S+ +T H Sbjct: 18 GFSRREVLLGLASTLLASSLLSYPFLSLAEQQTASA-----NPLQFARFFKISQTLTEHN 72 Query: 85 DLKTDTGVRIEAAMRKTYPDFAAQSARLGALLQDGQEPKALLAAATDAGLRDLTLAIVAA 144 D+ RI A+ P F AQ +LG LLQ GQ + L A AGL+D+ AI+ A Sbjct: 73 DIDQGMSARIFTALHNQSPQFTAQVEQLGGLLQPGQSAQQLQQQAVQAGLQDVVTAIITA 132 Query: 145 WYTGTIGKGKQAVVVSYAEALMYRPVSDGQTVPTYCNYGPVWWTKAPPAIRVS 197 WYTGT+G G+ A +++Y +ALMYRP SD VPTYC GP+WWT APPA+ VS Sbjct: 133 WYTGTVGHGQTAQLIAYKDALMYRPASDALIVPTYCGNGPLWWTAAPPAVNVS 185 >ref|YP_367034.1| hypothetical protein Bcep18194_C7346 [Burkholderia sp. 383] gb|ABB06390.1| hypothetical protein Bcep18194_C7346 [Burkholderia sp. 383] Length = 245 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/199 (45%), Positives = 117/199 (58%), Gaps = 11/199 (5%) Query: 20 KVKLTGGISRRHVLIGLAALVAEAGFWSNPLFSNAQTPAVPAAAPPPSPEALAFLNFSKR 79 +V GI+RR L +AA + + G LF+ A A A PS +A FL S Sbjct: 58 RVAARAGITRRAALKVMAAALTQVG-----LFTVAPGHAF---AQQPSLDAKTFLALSSA 109 Query: 80 ITGHADLKTDTGVRIEAAMRKTYPDFAAQSARLGALLQDGQEPKALLAAATDAGLRDLTL 139 +TGHA+L T R+ A +T FAA++A L ++ GQ P LLA A AGL D L Sbjct: 110 LTGHANLDPMTARRLVDAFHRTDAGFAARAAALAQRVRAGQTPAQLLADADSAGLHDTAL 169 Query: 140 AIVAAWYTGTIGKGKQAVVVSYAEALMYRPVSDGQTVPTYCNYGPVWWTKAPPAIRVSAP 199 AIVAAWYTGT+G G++AV+V+YA+ALMY V DG + PTYC+ GP+WWT PP V AP Sbjct: 170 AIVAAWYTGTVGHGQKAVMVTYADALMYDTVQDGMSAPTYCSNGPLWWTAEPPPADV-AP 228 Query: 200 VAPAPVPAPPTTGTPEPKA 218 P + AP T+ P+ A Sbjct: 229 --PRKMVAPATSQHPQKHA 245