BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0036.p (181 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775734.1| 1,4-alpha-glucan branching protein [Herbaspi... 139 2e-31 ref|YP_001892469.1| 1,4-alpha-glucan branching enzyme [Ralstonia... 90 1e-16 ref|YP_003775910.1| 1,4-alpha-glucan branching protein [Herbaspi... 88 7e-16 ref|YP_003747448.1| 1,4-alpha-glucan branching enzyme [Ralstonia... 79 2e-13 gb|EGH14830.1| glycogen branching enzyme [Pseudomonas syringae p... 78 7e-13 >ref|YP_003775734.1| 1,4-alpha-glucan branching protein [Herbaspirillum seropedicae SmR1] gb|ADJ63826.1| 1,4-alpha-glucan branching enzyme protein [Herbaspirillum seropedicae SmR1] Length = 819 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/182 (50%), Positives = 108/182 (59%), Gaps = 32/182 (17%) Query: 22 DLQLASSLQQGRLGDPFALLGPRYTA-------------------LPXPFAL-LGPRYTA 61 D L + L QGRLGDPFALLGPR A P A+ + R +A Sbjct: 38 DESLVARLMQGRLGDPFALLGPREIADAPEATQKAKAKRLRLCCYFPGASAVQVYARTSA 97 Query: 62 LPGPGES-DPHGVLLGNLAQ--PATMNA-------AEGSANGIFYGEVNLPVQAHHE-IP 110 P + D G LLG+L + PAT A +G+F+GEV LP +A IP Sbjct: 98 APDELHAPDSTGSLLGSLHEWSPATGQGESDHDQEAPRQRSGVFFGEVKLPRRAVQPPIP 157 Query: 111 YVLHVAWPGKNGKREEVQITEDPYAFGLLVSDFDLHLFREGRHRQLGRCLGSQVMRIDGV 170 YV HV W G +G RE +QITED YAFGLL+SDFDLHLFREGRHRQL RCLGSQVM+IDGV Sbjct: 158 YVFHVTWRGADG-RETLQITEDAYAFGLLLSDFDLHLFREGRHRQLARCLGSQVMQIDGV 216 Query: 171 DG 172 +G Sbjct: 217 EG 218 >ref|YP_001892469.1| 1,4-alpha-glucan branching enzyme [Ralstonia pickettii 12J] ref|YP_002983971.1| glycogen branching enzyme [Ralstonia pickettii 12D] gb|ACD29042.1| 1,4-alpha-glucan branching enzyme [Ralstonia pickettii 12J] gb|ACS65299.1| 1,4-alpha-glucan branching enzyme [Ralstonia pickettii 12D] Length = 768 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/154 (38%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 22 DLQLASSLQQGRLGDPFALLGP-RYTALPXPFALLGPRYTALPGPGESDPHGVLLGNLAQ 80 D +L GRLGDPFA+LGP R P ++ Y D G ++ + Sbjct: 27 DQMQVDALTHGRLGDPFAVLGPHRLDTEDGPRWVVRAFYPGARRVQAIDSRGQIITEMTP 86 Query: 81 PATMNAAEGSANGIFYGEVNLPVQAHHEIP--YVLHVAWPGKNGKREEVQITEDPYAFGL 138 G+F+G + Q + P Y L V WP G E VQ TEDPYAFGL Sbjct: 87 VGR--------TGLFHGPLRADAQDVYGHPELYRLRVIWPAGTGH-EAVQETEDPYAFGL 137 Query: 139 LVSDFDLHLFREGRHRQLGRCLGSQVMRIDGVDG 172 L+ D D+HL EG H L CLG+Q MRIDG+ G Sbjct: 138 LLGDLDMHLLNEGTHWALASCLGAQAMRIDGISG 171 >ref|YP_003775910.1| 1,4-alpha-glucan branching protein [Herbaspirillum seropedicae SmR1] gb|ADJ64002.1| 1,4-alpha-glucan branching enzyme protein [Herbaspirillum seropedicae SmR1] Length = 804 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 82/149 (55%), Gaps = 6/149 (4%) Query: 25 LASSLQQGRLGDPFALLGPRYTALPXPFALLGPRYTALPGPGESDPH-GVLLGNLAQPAT 83 + +L GRL PF LLGPRY + A + + H GVLL L Q Sbjct: 53 MLEALLAGRLTQPFDLLGPRYASAKGDGAAVRCFHPGAEAVRVRCRHSGVLLAELQQ--- 109 Query: 84 MNAAEGSANGIFYGEVNLPVQAHHEIPYVLHVAWPGKNGKREEVQITEDPYAFGLLVSDF 143 +G +G F G V Q HE+PYVL V W +G R VQ TEDPYAFGLL+ + Sbjct: 110 -YPVDGQPSGFFSGLVPGLEQRRHEVPYVLEVDWRIPDGSR-SVQSTEDPYAFGLLLGEL 167 Query: 144 DLHLFREGRHRQLGRCLGSQVMRIDGVDG 172 DLHL +EGRHRQL CLG++ M IDGV G Sbjct: 168 DLHLLQEGRHRQLADCLGARPMEIDGVPG 196 >ref|YP_003747448.1| 1,4-alpha-glucan branching enzyme [Ralstonia solanacearum CFBP2957] emb|CBJ53031.1| 1,4-alpha-glucan branching enzyme [Ralstonia solanacearum CFBP2957] Length = 765 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/152 (40%), Positives = 76/152 (50%), Gaps = 10/152 (6%) Query: 22 DLQLASSLQQGRLGDPFALLGP-RYTALPXPFALLGPRYTALPGPGESDPHGVLLGNLAQ 80 D +L GRLGDPFA+LGP R P ++ + DP G ++ LA Sbjct: 26 DRNALDALTHGRLGDPFAVLGPHRLETADGPSRVVRAFHPGARRVQAIDPRGQVMAELAP 85 Query: 81 PATMNAAEGSANGIFYGEVNLPVQAHHEIPYVLHVAWPGKNGKREEVQITEDPYAFGLLV 140 G+F+G+ H Y L V WP G E VQ EDPYAFGLL+ Sbjct: 86 VGR--------TGLFHGQFGQWPADAHPSAYRLRVTWPAGTGH-EAVQEAEDPYAFGLLL 136 Query: 141 SDFDLHLFREGRHRQLGRCLGSQVMRIDGVDG 172 + DLHL EGRH +L RCLG+Q MR DGV G Sbjct: 137 GELDLHLIAEGRHWELARCLGAQAMRQDGVAG 168 >gb|EGH14830.1| glycogen branching enzyme [Pseudomonas syringae pv. glycinea str. race 4] Length = 741 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 78/172 (45%), Gaps = 35/172 (20%) Query: 8 DAHHDSNQAGRALPDLQLASSLQQGRLGDPFALLGP-------RYTALPXPFALLGPRYT 60 +A H + RA+P +L + DPF++LGP +Y P A L R Sbjct: 2 NAPHKTGTGRRAIPAAVDIDALIRAEHRDPFSILGPHGDGGSGQYVRAYLP-AALSVRLL 60 Query: 61 ALPGPGESDPHGVLLGNLAQPATMNAAEGSANGIFYGEVNLPVQAHHEIPYVLHVAWPGK 120 A G LG + G F G + P PY+L V W G Sbjct: 61 A-------KDDGRELGEMEM--------SEVPGFFVGHLEQPQ------PYLLKVQWAGG 99 Query: 121 NGKREEVQITEDPYAFGLLVSDFDLHLFREGRHRQLGRCLGSQVMRIDGVDG 172 QITEDPY+FG L+ + DL+LF EG HR L CLG+QV ++DGVDG Sbjct: 100 E------QITEDPYSFGPLLGEMDLYLFAEGNHRDLSSCLGAQVTKVDGVDG 145