BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0027.p (184 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004750963.1| hypothetical protein CFU_0302 [Collimonas fu... 177 5e-43 ref|YP_316002.1| hypothetical protein Tbd_2244 [Thiobacillus den... 126 1e-27 ref|YP_001352729.1| hypothetical protein mma_1039 [Janthinobacte... 120 1e-25 ref|YP_003775903.1| membrane protein [Herbaspirillum seropedicae... 115 3e-24 ref|YP_001861533.1| hypothetical protein Bphy_5410 [Burkholderia... 102 2e-20 >ref|YP_004750963.1| hypothetical protein CFU_0302 [Collimonas fungivorans Ter331] gb|AEK60140.1| hypothetical protein CFU_0302 [Collimonas fungivorans Ter331] Length = 186 Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 103/174 (59%), Positives = 126/174 (72%), Gaps = 5/174 (2%) Query: 2 DETEYAVDELVQAGYPRDAITTFYLNPAGQHDTYPVGGDRNESPGAKDTPTGVAAGAATG 61 D+ YAV +LVQAGYPR+AI +FYLNPAGQHD YP+GGDR++SPGA+ T TG+AAGAA G Sbjct: 13 DDVHYAVSKLVQAGYPREAICSFYLNPAGQHDIYPIGGDRDKSPGAEKTDTGLAAGAAVG 72 Query: 62 AIVGATVGSTTAPVTGPAGPALGGLVGAHLGSLVGTLNATDDT--DEGGRHTQEVEVRKA 119 A +GA VG+ PV GP LG LVGAHLG LVG+L+AT D+ + + E+RK+ Sbjct: 73 AGMGAGVGAAVVPVI---GPVLGSLVGAHLGGLVGSLDATKDSRGKDAKDNDSRQEIRKS 129 Query: 120 GMRVAVAVEGIPQENEAIALLHSLKAADIERSEGHIEHGDWEDFDPLTPPRYVD 173 GMRVAVAV QE+ A ALL +L A D+ER G I GDW DFDPL+ P Y+D Sbjct: 130 GMRVAVAVADDRQESAATALLKALGATDMERGNGTIADGDWRDFDPLSKPCYID 183 >ref|YP_316002.1| hypothetical protein Tbd_2244 [Thiobacillus denitrificans ATCC 25259] gb|AAZ98197.1| putative membrane protein [Thiobacillus denitrificans ATCC 25259] Length = 196 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 8/173 (4%) Query: 7 AVDELVQAGYPRDAITTFYLNPAGQHDTYPVGGDRNESPGAKDTPTGVAAGAATGAIVGA 66 A EL++AG+P + FY NP GQH TYP+GGD NESPG D +G GA G G Sbjct: 18 AARELLRAGFPAAELGLFYFNPQGQHATYPIGGDENESPGTHDAKSGAVRGAVGGVGAGT 77 Query: 67 TVGSTTAPVTGPAGPALGGLVGAHLGSLVGTLNATDDTDEGGR-------HTQEVEVRKA 119 VG+ T PV GPA P G VGA+ GSLVG L ++++E + RKA Sbjct: 78 LVGAATIPVLGPAAPLFGAAVGAYTGSLVGALKHMEESEEAASPPPERAPRAAAADTRKA 137 Query: 120 GMRVAVAVEGIPQENEAIALLHSLKAADIERSEGHIEHGDWEDFDPLTPPRYV 172 G+ +AVAV+ + A+ +L + +A ++E ++G +++GDW DFDPL P + + Sbjct: 138 GIMLAVAVDTADERQTAVEVLGA-QADELEEAQGTLQNGDWVDFDPLAPRKLI 189 >ref|YP_001352729.1| hypothetical protein mma_1039 [Janthinobacterium sp. Marseille] gb|ABR88855.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 173 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/171 (46%), Positives = 109/171 (63%), Gaps = 10/171 (5%) Query: 2 DETEYAVDELVQAGYPRDAITTFYLNPAGQHDTYPVGGDRNESPGAKDTPTGVAAGAATG 61 DE + A+ L +AG P IT+FY+NP GQHD +P+GGDR+ESPG++D+ G AAG A G Sbjct: 13 DEAKAALAALHRAGAPDGQITSFYVNPPGQHDMFPIGGDRDESPGSEDSDKGTAAGLAAG 72 Query: 62 AIVGATVGSTTAPVTGPAGPALGGLVGAHLGSLVGTLNATDDTDEGGRHTQEVEVRKAGM 121 ++G G+ P+ G LVGAH+GSLVG+L++TD+ + +RKAGM Sbjct: 73 GLIGGAAGTAAGPLGA----VTGALVGAHIGSLVGSLSSTDEEKD------IPPLRKAGM 122 Query: 122 RVAVAVEGIPQENEAIALLHSLKAADIERSEGHIEHGDWEDFDPLTPPRYV 172 VAV V +E +AI +L A +ERSEG I +GDW DF+PL+ P +V Sbjct: 123 LVAVTVTSEEEEEKAIDTFRALGAQCVERSEGQIVNGDWTDFNPLSSPVFV 173 >ref|YP_003775903.1| membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63995.1| membrane protein [Herbaspirillum seropedicae SmR1] Length = 180 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 90/171 (52%), Positives = 113/171 (66%), Gaps = 8/171 (4%) Query: 2 DETEYAVDELVQAGYPRDAITTFYLNPAGQHDTYPVGGDRNESPGAKDTPTGVAAGAATG 61 ++ AV+ LV AGYPR+ I++F++NPAGQHD + +GGDR++SPGA+DT G AAG A G Sbjct: 13 EDASRAVEALVAAGYPRERISSFFVNPAGQHDRFALGGDRDKSPGAEDTDRGAAAGVAAG 72 Query: 62 AIVGATVGSTTAPVTGPAGPALGGLVGAHLGSLVGTLNATDDTDEGGRHTQEVEVRKAGM 121 A GA G APV GP GPALGGLVG H+G LVG+L ATD+ Q R AGM Sbjct: 73 ATAGAAAGLAAAPVAGPLGPALGGLVGGHVGGLVGSLGATDE--------QSAPRRAAGM 124 Query: 122 RVAVAVEGIPQENEAIALLHSLKAADIERSEGHIEHGDWEDFDPLTPPRYV 172 VAV V E +A+ L SL DIER++G I GDW+DFDPL P ++ Sbjct: 125 LVAVQVGDQQAEQKALDCLRSLHPEDIERAQGEIRAGDWDDFDPLAAPTWI 175 >ref|YP_001861533.1| hypothetical protein Bphy_5410 [Burkholderia phymatum STM815] gb|ACC74487.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 204 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 12/184 (6%) Query: 5 EYAVDELVQAGYPRDAITTFYLNPAGQHDTYPVGGDRNESPGAKDTPTGVAAGAATGAIV 64 E A + L + G+ + ++ F++NP GQH +P+GGD+N+ A D P G G GA++ Sbjct: 16 ESAAERLFREGFVEEDVSLFFVNPRGQHARFPIGGDQNKDAAATDAPKGAGMGVTIGAVL 75 Query: 65 GATVG-----STTAPVTGPAGPALGGLVGAHLGSLVGTLNATDDTDEGGRHTQEVEVRKA 119 GA +G + +APV A+ VGA++GSL+G + T +G H + V + Sbjct: 76 GAVIGVGIFTAFSAPVL---VSAIAAGVGAYIGSLIGAMYRTRGGGKGA-HAERVHYEER 131 Query: 120 GMRVAVAVEGIP-QENEAIALLHSLKAADIERSEGHIEHGDWEDFDPLTPPRYVDLQGNR 178 V +AV P ++ A +L A IER+ G + G W DFDP PP+ V QG R Sbjct: 132 DSGVLLAVHVTPDSQHTAAHVLREAGGASIERATGRWQQGRWADFDPTRPPQPV--QGER 189 Query: 179 SYTG 182 + G Sbjct: 190 TVDG 193