BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0018.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775876.1| hypothetical protein Hsero_2469 [Herbaspiril...   155   2e-36
ref|YP_001240334.1| hypothetical protein BBta_4388 [Bradyrhizobi...    99   2e-19
ref|YP_001418788.1| hypothetical protein Xaut_3907 [Xanthobacter...    99   2e-19
ref|YP_001791404.1| hypothetical protein Lcho_2374 [Leptothrix c...    98   4e-19
ref|NP_771350.1| hypothetical protein bll4710 [Bradyrhizobium ja...    97   7e-19

>ref|YP_003775876.1| hypothetical protein Hsero_2469 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63968.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/106 (72%), Positives = 92/106 (86%), Gaps = 4/106 (3%)

Query: 1   LLARIRPDEDLTIAIEEVCRTHGIKNAVVRGSVGSIIGAEFDDGRVIEDRATEILVRSGH 60
           +LARIRPD+DLT+A+E  C  HG+ NA+VRGSVGSIIGAEFDDGRV+EDRATEIL+R+G 
Sbjct: 187 VLARIRPDQDLTMAVEAACAEHGMANAIVRGSVGSIIGAEFDDGRVLEDRATEILIRAGE 246

Query: 61  VSRGHEGVRAQLDIALIDPRGHVCEGVLARGRNPVLICFELVLEEL 106
           V +G    RA+L+I LI+P+G VCEGVLARG NPVLICFELVL+EL
Sbjct: 247 VRQG----RARLEIGLINPQGQVCEGVLARGCNPVLICFELVLQEL 288


>ref|YP_001240334.1| hypothetical protein BBta_4388 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36428.1| hypothetical protein BBta_4388 [Bradyrhizobium sp. BTAi1]
          Length = 285

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 68/103 (66%)

Query: 4   RIRPDEDLTIAIEEVCRTHGIKNAVVRGSVGSIIGAEFDDGRVIEDRATEILVRSGHVSR 63
           R+RP++D    +E  C+  GI+ A +RG VGS IGA F  G V+E  ATE+ + +G ++ 
Sbjct: 182 RLRPNQDFAACLEAFCQAQGIREARIRGGVGSTIGARFASGEVVEPFATELTITAGVIAP 241

Query: 64  GHEGVRAQLDIALIDPRGHVCEGVLARGRNPVLICFELVLEEL 106
           G +G+ A LD+AL+D  G + +G L RG NPVL+  ELVLE L
Sbjct: 242 GADGLEAVLDVALVDYTGALAQGRLVRGDNPVLMTMELVLEVL 284


>ref|YP_001418788.1| hypothetical protein Xaut_3907 [Xanthobacter autotrophicus Py2]
 gb|ABS69131.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 290

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 69/106 (65%), Gaps = 1/106 (0%)

Query: 2   LARIRPDEDLTIAIEEVCRTHGIKNAVVRGSVGSIIGAEFDDGRVIEDRATEILVRSGHV 61
            AR+RP+ ++  A+EE+CR HG     +RG VGS+IGA F D   ++D ATE+ V SG V
Sbjct: 182 FARVRPNVEIGAAVEELCRRHGFAGGHLRGGVGSLIGARFADAPTVDDYATEVFVTSGTV 241

Query: 62  SRGHEG-VRAQLDIALIDPRGHVCEGVLARGRNPVLICFELVLEEL 106
           +    G + AQ+D+AL+   G + EG L  G NPVLI FEL +EE+
Sbjct: 242 APDASGALAAQIDLALVSLTGAMAEGRLVPGANPVLITFELAVEEI 287


>ref|YP_001791404.1| hypothetical protein Lcho_2374 [Leptothrix cholodnii SP-6]
 gb|ACB34639.1| conserved hypothetical protein [Leptothrix cholodnii SP-6]
          Length = 289

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 4   RIRPDEDLTIAIEEVCRTHGIKNAVVRGSVGSIIGAEFDDGRVIEDRATEILVRSGHVSR 63
           R+ P++D+   +E VCR HG   A +RG VGS +GA FDDGR++E   TE LVR G +  
Sbjct: 186 RLSPNQDVCSTLEAVCRAHGRSTATLRGGVGSTVGAVFDDGRIVEPFVTETLVRQGRIVA 245

Query: 64  GHEG-VRAQLDIALIDPRGHVCEGVLARGRNPVLICFELVL 103
             +G  RA++D+ ++D  G   +G LARG+NPVL+ FELVL
Sbjct: 246 DADGQPRAEIDVTMVDYLGGQHQGRLARGQNPVLVTFELVL 286


>ref|NP_771350.1| hypothetical protein bll4710 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49975.1| bll4710 [Bradyrhizobium japonicum USDA 110]
          Length = 286

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 65/105 (61%), Gaps = 1/105 (0%)

Query: 4   RIRPDEDLTIAIEEVCRTHGIKNAVVRGSVGSIIGAEFDDGRVIEDRATEILVRSGHVSR 63
           R+RP++D    +E  CR HGI  A + G VGS IGA F  G V E  ATE+ V +G ++ 
Sbjct: 182 RLRPNQDFAFCLEGFCREHGIARAKIHGGVGSTIGARFTHGGVTEPFATELAVTAGAIAP 241

Query: 64  GHEG-VRAQLDIALIDPRGHVCEGVLARGRNPVLICFELVLEELE 107
           G  G + A LD+ALID  G + EG L RG NPVL+  ELVLE L 
Sbjct: 242 GPSGALEAALDVALIDYTGGIAEGRLIRGDNPVLMTMELVLEVLS 286