BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0017.p         (114 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775876.1| hypothetical protein Hsero_2469 [Herbaspiril...   140   7e-32
ref|YP_002501205.1| hypothetical protein Mnod_6077 [Methylobacte...    75   3e-12
ref|YP_001524751.1| hypothetical protein AZC_1835 [Azorhizobium ...    69   3e-10
ref|YP_004548946.1| hypothetical protein Sinme_1593 [Sinorhizobi...    69   4e-10
ref|NP_385793.2| hypothetical protein SMc00259 [Sinorhizobium me...    69   4e-10

>ref|YP_003775876.1| hypothetical protein Hsero_2469 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63968.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score =  140 bits (353), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 80/102 (78%)

Query: 13  FARTARHPGAPDPVRIVSLAGPAMAVTITLEAGRNLRDAIAIPLAAAGIAGGTVRIENLK 72
           F+RT RHPGAPDP RIVSLAGPAM +  TLEAGRNLRDAI+IPL+ AG+ GGTVR   L 
Sbjct: 7   FSRTVRHPGAPDPQRIVSLAGPAMQLDFTLEAGRNLRDAISIPLSRAGLEGGTVRFGQLA 66

Query: 73  VAPHHYLMPALSDDGKHAAFYSDPHEVAGGVTIELACATFGQ 114
           +A  H+LMPAL+ D +HAAFYS PH +  G  I+ ACAT+G+
Sbjct: 67  IAELHFLMPALAVDDQHAAFYSAPHAMEEGTLIDYACATYGR 108


>ref|YP_002501205.1| hypothetical protein Mnod_6077 [Methylobacterium nodulans ORS 2060]
 gb|ACL60902.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 293

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 55/96 (57%)

Query: 19  HPGAPDPVRIVSLAGPAMAVTITLEAGRNLRDAIAIPLAAAGIAGGTVRIENLKVAPHHY 78
            PG P P R ++ AGP + +   L  G  L DA+ +PL AAG+ G  V +E     P  Y
Sbjct: 17  QPGPPRPERRIAAAGPLLRLAPDLTPGATLLDALGLPLRAAGLGGAVVHLEGGAFEPFAY 76

Query: 79  LMPALSDDGKHAAFYSDPHEVAGGVTIELACATFGQ 114
           +MPALS D  +AA+YS+    AG   +E A ATFG+
Sbjct: 77  VMPALSTDPAYAAYYSETFRPAGETRLERASATFGE 112


>ref|YP_001524751.1| hypothetical protein AZC_1835 [Azorhizobium caulinodans ORS 571]
 dbj|BAF87833.1| hypothetical protein AZC_1835 [Azorhizobium caulinodans ORS 571]
          Length = 330

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 54/99 (54%)

Query: 15  RTARHPGAPDPVRIVSLAGPAMAVTITLEAGRNLRDAIAIPLAAAGIAGGTVRIENLKVA 74
           R  + PG     R  S+      + ITLE G +L +AIA PL AAG  GG+V   +  +A
Sbjct: 46  RALKQPGPAAARRFESVCTGLEEMDITLEPGLSLNEAIARPLLAAGWTGGSVCFTDGWLA 105

Query: 75  PHHYLMPALSDDGKHAAFYSDPHEVAGGVTIELACATFG 113
           P H++MPA + D  HAA+YS  H   G   IE A  TFG
Sbjct: 106 PFHFVMPAPAPDETHAAWYSQTHSPDGEALIEQANITFG 144


>ref|YP_004548946.1| hypothetical protein Sinme_1593 [Sinorhizobium meliloti AK83]
 gb|AEG04355.1| hypothetical protein SinmeB_1436 [Sinorhizobium meliloti BL225C]
 gb|AEG53332.1| hypothetical protein Sinme_1593 [Sinorhizobium meliloti AK83]
 gb|AEH78987.1| hypothetical protein SM11_chr1718 [Sinorhizobium meliloti SM11]
          Length = 284

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 53/100 (53%)

Query: 15  RTARHPGAPDPVRIVSLAGPAMAVTITLEAGRNLRDAIAIPLAAAGIAGGTVRIENLKVA 74
           R+ R PGAP   R++SL   A    +T + GR++ +A+   LA  G     + +     A
Sbjct: 2   RSLRQPGAPFTPRVISLGCHAEKARLTFKPGRSVLEAVHEALAETGCDSAMIEVRGGAFA 61

Query: 75  PHHYLMPALSDDGKHAAFYSDPHEVAGGVTIELACATFGQ 114
           P  Y+ P LSDDG HAA+YSD H   G   IE    TFG+
Sbjct: 62  PLAYVTPTLSDDGIHAAWYSDIHAPDGRAPIEDLVMTFGR 101


>ref|NP_385793.2| hypothetical protein SMc00259 [Sinorhizobium meliloti 1021]
 emb|CAC46266.2| Hypothetical protein SMc00259 [Sinorhizobium meliloti 1021]
          Length = 285

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 53/100 (53%)

Query: 15  RTARHPGAPDPVRIVSLAGPAMAVTITLEAGRNLRDAIAIPLAAAGIAGGTVRIENLKVA 74
           R+ R PGAP   R++SL   A    +T + GR++ +A+   LA  G     + +     A
Sbjct: 3   RSLRQPGAPFTPRVISLGCHAEKARLTFKPGRSVLEAVHEALAETGCDSAMIEVRGGAFA 62

Query: 75  PHHYLMPALSDDGKHAAFYSDPHEVAGGVTIELACATFGQ 114
           P  Y+ P LSDDG HAA+YSD H   G   IE    TFG+
Sbjct: 63  PLAYVTPTLSDDGIHAAWYSDIHAPDGRAPIEDLVMTFGR 102