BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0010.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775927.1| AraC family ethanolamine operon transcriptio... 247 1e-63 ref|YP_982847.1| helix-turn-helix domain-containing protein [Pol... 203 2e-50 ref|YP_521866.1| AraC family transcriptional regulator [Rhodofer... 180 2e-43 emb|CBA27072.1| hypothetical protein Csp_A00450 [Curvibacter put... 158 6e-37 ref|YP_004311531.1| AraC family transcriptional regulator [Marin... 135 4e-30 >ref|YP_003775927.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64019.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 128/209 (61%), Positives = 147/209 (70%), Gaps = 4/209 (1%) Query: 1 LRTVVAHDVDEHAHNLTNWEQRYDQITHGRFCGELNEWQAHGLQIFRERSSRAVLQSCCV 60 LRT VA DVDEHAHNLT+WEQRYDQIT G F G L EWQ+ GLQIFRE SSRAV QSC V Sbjct: 20 LRTTVARDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSDGLQIFREASSRAVRQSCQV 79 Query: 61 WPDAFWFGIEPQARGMRINGRNVGAGMIMTQPGHREFELMTPDDHEILGIVIQRNTLLAA 120 WPDA+WFGIE + GMRINGR VG ++MT+PG EFEL+TPD HEI GIV+QR+ L A+ Sbjct: 80 WPDAYWFGIEARTTGMRINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQAS 139 Query: 121 ADRLGCRIEWSRLAAAELLHVGQDALLACAQHIQTLL----DAQAPQGAQAMQQDHVITT 176 A RLGC+ +W RL AELL V L C Q I LL A A ++Q+ V+ Sbjct: 140 AARLGCQPDWQRLGQAELLKVDHGGLEDCRQQIAALLAMAGQASGAHAALQLRQEAVLVA 199 Query: 177 LLAMLDAGEVENDACTSLLRRRRAVNXHR 205 LLAMLD GE+E +A S LRRRR VN R Sbjct: 200 LLAMLDEGEIEAEAGASFLRRRRIVNDAR 228 >ref|YP_982847.1| helix-turn-helix domain-containing protein [Polaromonas naphthalenivorans CJ2] gb|ABM37926.1| transcriptional regulator, AraC family [Polaromonas naphthalenivorans CJ2] Length = 347 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 106/219 (48%), Positives = 141/219 (64%), Gaps = 14/219 (6%) Query: 1 LRTVVAHDVDEHAHNLTNWEQRYDQITHGRFCGELNEWQAHGLQIFRERSSRAVLQSCCV 60 +R V AHD D+HA NLT WEQRYDQ+T G F G L E + +Q+F E +S+AV QSCCV Sbjct: 28 IRKVQAHDADDHARNLTAWEQRYDQVTRGPFHGTLTELRMPAMQVFMEHTSQAVRQSCCV 87 Query: 61 WPDAFWFGI--------EPQARGMRINGRNVGAGMIMTQPGHREFELMTPDDHEILGIVI 112 WPDAFWFG+ E RINGR A IM +PG+REFEL+TP D+ I GIVI Sbjct: 88 WPDAFWFGVPGGANTAGERSGMNARINGRLGDADTIMVRPGNREFELLTPADYAIYGIVI 147 Query: 113 QRNTLLAAADRLGCRIEWSRLAAAELLHVGQDALLACAQHIQTLL-----DAQA-PQGAQ 166 +R++LL A +LGCRI+W++L AE+LHV + A LAC Q + L+ D++ P + Sbjct: 148 KRDSLLVTASQLGCRIDWAQLERAEVLHVAESARLACQQTLARLILQGRADSEGQPVASV 207 Query: 167 AMQQDHVITTLLAMLDAGEVENDACTSLLRRRRAVNXHR 205 A + V+ +L+MLDA EV++ S +RR+R V R Sbjct: 208 ACAEQAVMLAVLSMLDASEVDSAVSNSFMRRQRIVARAR 246 >ref|YP_521866.1| AraC family transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD68335.1| transcriptional regulator, AraC family [Rhodoferax ferrireducens T118] Length = 330 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 98/205 (47%), Positives = 129/205 (62%) Query: 1 LRTVVAHDVDEHAHNLTNWEQRYDQITHGRFCGELNEWQAHGLQIFRERSSRAVLQSCCV 60 +RT+ A D DEHAHNLT+WEQ YDQIT G F G L E +Q+FRER+S+AV QSCCV Sbjct: 25 IRTIEAFDADEHAHNLTDWEQSYDQITRGHFHGALAELHLPQMQVFRERTSQAVRQSCCV 84 Query: 61 WPDAFWFGIEPQARGMRINGRNVGAGMIMTQPGHREFELMTPDDHEILGIVIQRNTLLAA 120 WPDAFWFG+ Q+ RINGR G IM +PG EFEL+TP D+ I GIVI+R L A Sbjct: 85 WPDAFWFGLPEQSDQTRINGRLAGEHAIMVRPGACEFELVTPPDYAIYGIVIRREALWQA 144 Query: 121 ADRLGCRIEWSRLAAAELLHVGQDALLACAQHIQTLLDAQAPQGAQAMQQDHVITTLLAM 180 A+ GCRI+W++L E++HV + + Q + LL + ++Q ++ LLA+ Sbjct: 145 AELSGCRIDWAQLTGTEVMHVDSSSRASLLQTLSGLLQDGGGCTDRDLRQQVLVNALLAL 204 Query: 181 LDAGEVENDACTSLLRRRRAVNXHR 205 LD V++ S RR+R V R Sbjct: 205 LDTRAVDSAVSGSFQRRQRIVAKAR 229 >emb|CBA27072.1| hypothetical protein Csp_A00450 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 344 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/205 (42%), Positives = 120/205 (58%), Gaps = 2/205 (0%) Query: 1 LRTVVAHDVDEHAHNLTNWEQRYDQITHGRFCGELNEWQAHGLQIFRERSSRAVLQSCCV 60 LR + A D DEHA NLTNWEQ YDQ T G F G L E Q +Q+FRE +S+ + Q+CCV Sbjct: 43 LRVIEARDADEHAGNLTNWEQCYDQTTPGSFHGLLEEMQLPDMQVFRESTSQGMRQTCCV 102 Query: 61 WPDAFWFGIEPQARGMRINGRNVGAGMIMTQPGHREFELMTPDDHEILGIVIQRNTLLAA 120 WPDA WFG+ A+ RINGR ++ +PG+ EFEL+TP D+ I G+V++++ L A Sbjct: 103 WPDALWFGLPYSAQATRINGRTATPDSVLVRPGNCEFELVTPADYTIFGVVVRQDALREA 162 Query: 121 ADRLGCRIEWSRLAAAELLHVGQDALLACAQHIQTLLDAQAPQGAQAMQQDHVITTLLAM 180 A R+G ++W RL+ AE++ A C + LL A Q + LL + Sbjct: 163 AHRMGFELDWERLSRAEVVQASPAARHQCLHTLHALLAGDAVSSTDP--QHLALDALLPL 220 Query: 181 LDAGEVENDACTSLLRRRRAVNXHR 205 LD G V++ SL RR+R V R Sbjct: 221 LDTGVVDSAVRDSLARRQRIVAKAR 245 >ref|YP_004311531.1| AraC family transcriptional regulator [Marinomonas mediterranea MMB-1] gb|ADZ89695.1| transcriptional regulator, AraC family [Marinomonas mediterranea MMB-1] Length = 321 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 107/207 (51%), Gaps = 1/207 (0%) Query: 1 LRTVVAHDVDEHAHNLTNWEQRYDQITHGRFCGELNEWQAHGLQIFRERSSRAVLQSCCV 60 +R A D D HA NLTNW Q YDQ + G F G + E LQ+F+E +S+A+ Q C V Sbjct: 14 IRRTEAFDADLHAENLTNWNQEYDQTSRGSFFGSITELAFDDLQVFQEYTSQALQQKCIV 73 Query: 61 WPDAFWFGIEPQAR-GMRINGRNVGAGMIMTQPGHREFELMTPDDHEILGIVIQRNTLLA 119 WPD+ W GI + + RING ++ IM +PG EF+L TP+D+ + G+V+Q +L+ Sbjct: 74 WPDSVWLGIPVENQEASRINGLSIHPNTIMCRPGDYEFQLTTPEDYNLYGMVVQLESLMK 133 Query: 120 AADRLGCRIEWSRLAAAELLHVGQDALLACAQHIQTLLDAQAPQGAQAMQQDHVITTLLA 179 A G + W L L + + L +Q +LD A M D ++ LL Sbjct: 134 TAAIHGVELNWKELMQHGRLALPEQTLRDVRVVLQRMLDMSTHTKANRMSYDVLMMALLE 193 Query: 180 MLDAGEVENDACTSLLRRRRAVNXHRR 206 +L + + + RR+ V+ RR Sbjct: 194 VLKEETPQPASTQTFHRRKEVVDTARR 220