BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0002.p (276 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002987423.1| hypothetical protein Dd703_1805 [Dickeya dad... 234 2e-59 ref|ZP_06844432.1| conserved hypothetical protein [Burkholderia ... 189 3e-46 ref|YP_552984.1| hypothetical protein Bxe_B2355 [Burkholderia xe... 187 1e-45 ref|ZP_04578361.1| predicted protein [Oxalobacter formigenes OXC... 184 1e-44 ref|YP_001766561.1| hypothetical protein Mrad2831_5820 [Methylob... 170 2e-40 >ref|YP_002987423.1| hypothetical protein Dd703_1805 [Dickeya dadantii Ech703] gb|ACS85601.1| conserved hypothetical protein [Dickeya dadantii Ech703] Length = 262 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/261 (48%), Positives = 158/261 (60%) Query: 16 RAALDHLVINTHYDIDAAQTLFDGLGFTVTPRGYHTLGSVNHLVVLAGGYLELIGQPRDS 75 R LDHLV+NTHYD D A LF LGFT+TP+G+H+LGSVNHLV+L YLEL+G P + Sbjct: 2 RLFLDHLVLNTHYDTDGAAALFRQLGFTLTPKGHHSLGSVNHLVLLGDSYLELLGLPAEQ 61 Query: 76 DKVRQEILDSPVGIDGLVYAVDDIEACHDRWLALGLDAQPVQHFSRPVQVADKSVDARFS 135 RQE+L P G+DG+V+ +I+A GL QPV+HFSRPV + +S ARFS Sbjct: 62 TPQRQELLAGPRGLDGVVFRSQNIDASAAALQTAGLAIQPVRHFSRPVILNGESHPARFS 121 Query: 136 TARLRPGQFAAGRVYACRHLTPELVWRPEWMAHANGVRGISSLLVVDKDPVQAAESYARL 195 T L F GRVY C+H TPELVWR EW HANGV +S L+ V P AA + L Sbjct: 122 TVHLAAELFVEGRVYFCQHHTPELVWRDEWRRHANGVTHLSRLVGVTAAPDDAARRFQAL 181 Query: 196 GLWGADFALEFAGAGSLPARFGELAACAPQRDVRFTAIRFRGGDRGFISARARALGLPVR 255 G FALEF + R+ EL R +FT +R GGDR ++ +A + LP Sbjct: 182 GDLDVAFALEFVTPTAFGERYAELPPPGGGRTSQFTVLRLHGGDRPALARQAEQVSLPCH 241 Query: 256 EDVDTLALALPAFRTLLEFAD 276 + L +ALPAF TLLEF D Sbjct: 242 VEPQRLLVALPAFNTLLEFVD 262 >ref|ZP_06844432.1| conserved hypothetical protein [Burkholderia sp. Ch1-1] gb|EFG67919.1| conserved hypothetical protein [Burkholderia sp. Ch1-1] Length = 300 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 105/256 (41%), Positives = 142/256 (55%), Gaps = 14/256 (5%) Query: 17 AALDHLVINTHYDIDAAQTLFDGLGFTVTPRGYHTLGSVNHLVVLAGGYLELIGQPRDSD 76 + LDH+V+N ++ DAA + F+ LGF TPRGYH+LGSVNHL++ G YLEL+G P + Sbjct: 7 STLDHVVVNAMFETDAAASCFEALGFASTPRGYHSLGSVNHLMMFDGHYLELVGLPPGAT 66 Query: 77 KVRQEILDSPVGIDGLVYAVDDIEACHDRWLALGLDAQPVQHFSRPVQVADKSVDARFST 136 +R+EIL+S +GIDGLV+ DD + + R + G+ A Q F+RPV + ARF T Sbjct: 67 TLRREILESRLGIDGLVFKTDDAQETYARLIDAGVRASEPQSFTRPVDIEGVEQIARFRT 126 Query: 137 ARLRPGQFAAGRVYACRHLTPELVWRPEWMAHANGVRGISSLLVVDKDPVQAAESYA--- 193 RL + +AGRVY C HLTPE V+R EW H NG + + ++V DP A YA Sbjct: 127 TRLAAEELSAGRVYFCEHLTPEWVFRAEWTKHPNGAQRLKECVIVSDDPQLEARRYALIA 186 Query: 194 -----------RLGLWGADFALEFAGAGSLPARFGELAACAPQRDVRFTAIRFRGGDRGF 242 R + DF L+F + AR+G+L A RD F A+ D Sbjct: 187 GESDLTSPSSHRSRIALRDFDLDFIDGAAYRARYGDLVCNAAGRDSYFGAVVVEVSDLAA 246 Query: 243 ISARARALGLPVREDV 258 + AR AL V E V Sbjct: 247 MRARLDALASHVDESV 262 >ref|YP_552984.1| hypothetical protein Bxe_B2355 [Burkholderia xenovorans LB400] gb|ABE33634.1| hypothetical protein Bxe_B2355 [Burkholderia xenovorans LB400] Length = 300 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 105/256 (41%), Positives = 143/256 (55%), Gaps = 18/256 (7%) Query: 19 LDHLVINTHYDIDAAQTLFDGLGFTVTPRGYHTLGSVNHLVVLAGGYLELIGQPRDSDKV 78 LDH+V+N ++ DAA + F+ LGF +TPRGYH+LGSVNHL++ G YLEL+G P + + Sbjct: 9 LDHVVVNAMFETDAAASCFEALGFALTPRGYHSLGSVNHLMMFDGHYLELVGLPPGATTL 68 Query: 79 RQEILDSPVGIDGLVYAVDDIEACHDRWLALGLDAQPVQHFSRPVQVADKSVDARFSTAR 138 R+EIL+S +GIDGLV+ DD + + R + G+ A Q F+RPV + ARF T R Sbjct: 69 RREILESRLGIDGLVFKTDDAQGTYARLIDAGVRASDPQSFTRPVDIDGVEQIARFRTTR 128 Query: 139 LRPGQFAAGRVYACRHLTPELVWRPEWMAHANGVRGISSLLVVDKDPVQAAESYA----- 193 L + +AGRVY C HLTPE V+R EW H NG + + ++V +P A YA Sbjct: 129 LAAEELSAGRVYFCEHLTPEWVFRAEWAKHPNGAQRLKECVIVSDEPQLEARRYALIAGE 188 Query: 194 -----------RLGLWGADFALEFAGAGSLPARFGELAACAPQRDVRFTAIRFRGGDRGF 242 R+ L DF L+F + AR+G+L A RD F A+ D Sbjct: 189 SDLTSPSARHSRIAL--GDFDLDFIDGAAYRARYGDLVCNAAGRDSYFGAVVVEVSDLAA 246 Query: 243 ISARARALGLPVREDV 258 + AR AL V E V Sbjct: 247 VRARLDALTSHVDESV 262 >ref|ZP_04578361.1| predicted protein [Oxalobacter formigenes OXCC13] gb|EEO29334.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 253 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 108/223 (48%), Positives = 134/223 (60%), Gaps = 11/223 (4%) Query: 18 ALDHLVINTHYDIDAAQTLFDGLGFTVTPRGYHTLGSVNHLVVLAGGYLELIGQPRDSDK 77 +LDHLVINT +++D+ + F LGFTVTP+ +H+LGSVNHL+V YLELIG RD Sbjct: 5 SLDHLVINTRFNLDSYRAFFSRLGFTVTPKSHHSLGSVNHLIVFQDTYLELIGLERDG-P 63 Query: 78 VRQEILDSPVGIDGLVYAVDDIEACHDRWLALGLDAQPVQHFSRPVQVADKSVDARFSTA 137 VR++I++S +GIDGLV + D EA GL A +Q F+R ++ +K A F Sbjct: 64 VRKDIMESRMGIDGLVLRMQDEEAVVAGLKKAGLLAFSLQKFNRLLENGEK---AEFLAV 120 Query: 138 RLRPGQFAAGRVYACRHLTPELVWRPEWMAHANGVRGISSLLVVDKDPVQAAESYARLG- 196 RL PGQFA GRVY CRHLTPELVW+P M H NGV GI L + DP E+Y RLG Sbjct: 121 RLEPGQFAEGRVYFCRHLTPELVWQPGHMTHPNGVSGIGKLTIAAADPDVTREAYGRLGK 180 Query: 197 LWGADFALEFAGAGSLPARFGELAACAPQRDVRFTAIRFRGGD 239 L G + L+ RFG L P RF AI F G D Sbjct: 181 LKGIE--LDICDLEEARKRFG-LQTVQPD---RFLAITFTGAD 217 >ref|YP_001766561.1| hypothetical protein Mrad2831_5820 [Methylobacterium radiotolerans JCM 2831] gb|ACB27759.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM 2831] Length = 270 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 118/256 (46%), Positives = 147/256 (57%), Gaps = 13/256 (5%) Query: 18 ALDHLVINTHYDIDAAQTLFDGLGFTVTPRGYHTLGSVNHLVVLAGGYLELIGQPRDSDK 77 ALDH+VIN +D A LF LGF +TPRG+H+LGS+NHL++ AG YLEL+G P ++ Sbjct: 13 ALDHVVINVLRRMDEAADLFAALGFRLTPRGHHSLGSINHLMMTAGPYLELVGVP-ETGP 71 Query: 78 VRQEILDSPVGIDGLVYAVDDIEACHDRWLALGLDAQPVQHFSRPVQVADKSVDARFSTA 137 RQ++LDSP G++GLV A D +A H R ALGL A P FSRPV V + ARF T Sbjct: 72 QRQDVLDSPFGLNGLVVASRDADATHARLAALGLAAGPPVAFSRPVTVDGREAAARFRTV 131 Query: 138 RLRPGQFAAGRVYACRHLTPELVWRPEWMAHANGVRGISSLLVVDKDPVQAAESYARLGL 197 R+ +F AGR+Y C H TP+LVWRPEW+ H NG GI +L + P E+ A L Sbjct: 132 RVPADRFPAGRLYHCEHRTPDLVWRPEWLDHPNGFSGIDALTIESPAP----EADAALYA 187 Query: 198 WGADFALEFAGAGSLPARFGEL-AACAPQRDVRFTAIRFRGGDRGFISARARALGLP--- 253 A E G G R GE A P RF A+ R RG + ARA+ LP Sbjct: 188 AATGTAAEATGDGWT-LRLGETRVAIVPGPAARFAALTLRF--RGLDALEARAVALPEAA 244 Query: 254 -VREDVDTLALALPAF 268 VR + L LPAF Sbjct: 245 WVRHGPEAATLTLPAF 260