BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0001.p         (195 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775735.1| hypothetical protein Hsero_2328 [Herbaspiril...   197   9e-49
ref|YP_004156182.1| hemerythrin hhe cation binding domain-contai...   137   6e-31
ref|YP_003052335.1| Hemerythrin HHE cation-binding domain-contai...   134   9e-30
ref|YP_001101508.1| hypothetical protein HEAR3280 [Herminiimonas...   133   1e-29
ref|YP_004040889.1| hemerythrin hhe cation-binding domain-contai...   132   2e-29

>ref|YP_003775735.1| hypothetical protein Hsero_2328 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63827.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 157

 Score =  197 bits (500), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 95/150 (63%), Positives = 123/150 (82%)

Query: 1   VLLKADHQEAKELFDKYENIKEHAGDDQKMEIAKKVCGALLIHMEIEEKIFYPRVRQKID 60
            LL+ DH+EA+ELF+K+E+IK+ A   +K E+A+KVCGALLIHMEIEEKIFYP+VRQ+I 
Sbjct: 8   TLLQGDHREAEELFEKFEDIKDKASAQEKFELAQKVCGALLIHMEIEEKIFYPQVRQRIG 67

Query: 61  DADLMNEALVEHDGAKSLIQQIGELKPGDPMFDAKIKVLGEQIEHHVEEEEKEMFPKARD 120
           D DLMNE++VEH GAK LI+Q+GELK  DPMFDAK+KVL EQI+HHVEEEE EMFPK R 
Sbjct: 68  DDDLMNESVVEHAGAKDLIKQLGELKADDPMFDAKMKVLSEQIQHHVEEEESEMFPKVRK 127

Query: 121 SGLDLIELGSQLFEAKNRLRVEHGLPALST 150
           + LDL  LG++L + K +++ E GL  +++
Sbjct: 128 ANLDLQVLGAELLKGKTQMQEEQGLAPVAS 157


>ref|YP_004156182.1| hemerythrin hhe cation binding domain-containing protein
           [Variovorax paradoxus EPS]
 gb|ADU38071.1| Hemerythrin HHE cation binding domain protein [Variovorax paradoxus
           EPS]
          Length = 164

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/151 (50%), Positives = 98/151 (64%), Gaps = 5/151 (3%)

Query: 2   LLKADHQEAKELFDKYE---NIKEHAGDDQKMEIAKKVCGALLIHMEIEEKIFYPRVRQK 58
           LL  DH+  K++F  YE   N K  +  D+K E+A ++C  L +H +IEE+IFYP VR+ 
Sbjct: 14  LLDTDHKNVKKMFTAYEELANSKAASAADKKRELASQICAELTVHTQIEEEIFYPAVREA 73

Query: 59  IDDADLMNEALVEHDGAKSLIQQIGELKPGDPMFDAKIKVLGEQIEHHVEEEEKEMFPKA 118
           I + DL++EA VEH  AK LI QI E    D MFDAK+KVLGE I+HHV+EE  EMFPKA
Sbjct: 74  IKETDLLDEAEVEHASAKDLIAQIQEATEIDDMFDAKVKVLGEYIDHHVKEERNEMFPKA 133

Query: 119 RDS-GLDLIELGSQLFEAKNRLRVE-HGLPA 147
           R + GLDL+ +  QL   K  L  E  G PA
Sbjct: 134 RAARGLDLVAMREQLMARKEELMGELMGEPA 164


>ref|YP_003052335.1| Hemerythrin HHE cation-binding domain-containing protein
           [Methylovorus glucosetrophus SIP3-4]
 gb|ACT51808.1| Hemerythrin HHE cation binding domain protein [Methylovorus
           glucosetrophus SIP3-4]
          Length = 191

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 65/137 (47%), Positives = 91/137 (66%)

Query: 6   DHQEAKELFDKYENIKEHAGDDQKMEIAKKVCGALLIHMEIEEKIFYPRVRQKIDDADLM 65
           DH+  K+LF +Y  + E    + K  +A ++C  L +H  +EE+IFYP  R  I D DL+
Sbjct: 31  DHKNVKKLFKQYSKLAEKEDIEGKTLVANQICLELTVHARVEEEIFYPAARAAIHDDDLL 90

Query: 66  NEALVEHDGAKSLIQQIGELKPGDPMFDAKIKVLGEQIEHHVEEEEKEMFPKARDSGLDL 125
           NEA+VEH  AKSLI QI  + P DPM+DAK+ VL E I+HHVEEEE EMFPK + + +DL
Sbjct: 91  NEAVVEHSTAKSLIGQIQSMNPSDPMYDAKMTVLSEYIDHHVEEEETEMFPKVKKAKVDL 150

Query: 126 IELGSQLFEAKNRLRVE 142
            EL +++ + + +L  E
Sbjct: 151 EELEAEVSKRRGQLMAE 167


>ref|YP_001101508.1| hypothetical protein HEAR3280 [Herminiimonas arsenicoxydans]
 emb|CAL63387.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 173

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 92/142 (64%)

Query: 1   VLLKADHQEAKELFDKYENIKEHAGDDQKMEIAKKVCGALLIHMEIEEKIFYPRVRQKID 60
            LL  DH++ K+LF +YE + +    D K++IA ++C  L +H  +EE+IFYP  R  I 
Sbjct: 30  TLLIDDHKKVKKLFKEYEKLSKKEDIDGKVDIAHQICEELTVHATVEEEIFYPAARAAIH 89

Query: 61  DADLMNEALVEHDGAKSLIQQIGELKPGDPMFDAKIKVLGEQIEHHVEEEEKEMFPKARD 120
             DL+NEA VEH  AK LI QI E+   DPM+DA++KVL E I HHVEEEE EMFPK+R 
Sbjct: 90  ADDLLNEAEVEHATAKDLIAQIQEMSGDDPMYDARMKVLSEYINHHVEEEETEMFPKSRK 149

Query: 121 SGLDLIELGSQLFEAKNRLRVE 142
           + +DL  L  ++ E K  L  E
Sbjct: 150 AKMDLEGLAVEMMERKEELMAE 171


>ref|YP_004040889.1| hemerythrin hhe cation-binding domain-containing protein
           [Methylovorus sp. MP688]
 gb|ADQ85653.1| Hemerythrin HHE cation binding domain protein [Methylovorus sp.
           MP688]
          Length = 191

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/137 (47%), Positives = 90/137 (65%)

Query: 6   DHQEAKELFDKYENIKEHAGDDQKMEIAKKVCGALLIHMEIEEKIFYPRVRQKIDDADLM 65
           DH+  K+LF +Y  + E    + K  +A ++C  L +H  +EE+IFYP  R  I D DL+
Sbjct: 31  DHKNVKKLFKQYSKLAEKEDIEGKTLVANQICLELTVHARVEEEIFYPAARAAIHDDDLL 90

Query: 66  NEALVEHDGAKSLIQQIGELKPGDPMFDAKIKVLGEQIEHHVEEEEKEMFPKARDSGLDL 125
           NEA+VEH  AKSLI QI  + P DPM+DAK+ VL E I+HHVEEEE EMFPK + + +DL
Sbjct: 91  NEAVVEHSTAKSLIGQIQSMNPSDPMYDAKMTVLSEYIDHHVEEEETEMFPKVKKAKVDL 150

Query: 126 IELGSQLFEAKNRLRVE 142
            EL  ++ + + +L  E
Sbjct: 151 EELEVEVSKRRGQLMAE 167