BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0299.p (377 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAL60281.2| putative two-component sensor histidine kinase [... 380 e-103 ref|YP_001098410.1| putative two-component sensor histidine kina... 369 e-100 ref|YP_257772.1| sensor histidine kinase [Pseudomonas fluorescen... 286 5e-75 gb|EGH80465.1| sensor histidine kinase [Pseudomonas syringae pv.... 281 1e-73 ref|ZP_07261507.1| sensor histidine kinase [Pseudomonas syringae... 280 3e-73 >emb|CAL60281.2| putative two-component sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 375 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/375 (51%), Positives = 259/375 (69%), Gaps = 5/375 (1%) Query: 1 MKLSTFIISNMEKVLAEWDRFARTL--ELEELSSRTEVRNHAEQILRAIARDIDTEQSSE 58 MKLS FI +ME++L EWD FA+TL E++SSR +R+HA QIL+ +A DID+EQS+ Sbjct: 1 MKLSRFITEHMEEILNEWDAFAQTLLPAAEDMSSRA-LRDHARQILQELAVDIDSEQSAL 59 Query: 59 QQQRKSQGLSHSSVIASGASIYGTARQHDGFTLLQLTAEFRALRATVQRLWFSLGNALTP 118 +Q KS+G+ S S A+ +G RQ GF+LLQLT+E+RALRATV RLW +T Sbjct: 60 EQAEKSKGMDISE--DSAAATHGELRQLSGFSLLQLTSEYRALRATVLRLWLPHVTQITE 117 Query: 119 AHSADLIRFNEAIDQALAESVGTYAAQASRAKDTFLAILGHDLRNPLATIALSSSLLGQP 178 + D++RFNEAIDQ LAESV TY+ R +DTFLAILGHDLR+PLA +A++ L P Sbjct: 118 ITTRDMVRFNEAIDQGLAESVVTYSESTVRTRDTFLAILGHDLRSPLAAMAMAGHYLALP 177 Query: 179 GMTKEGIALLAPRIKRSASMMNSMINDLLEYARAELGGEMPMSFADVDMLDICHAAVVDA 238 G+ E + R+KRSA+ M +M+ND+LEYAR +LGGEMP++F D+ DI A++ DA Sbjct: 178 GVGTEATLRVGSRVKRSAATMTAMVNDMLEYARGQLGGEMPITFEQADLQDIFQASLHDA 237 Query: 239 SAVHAHCSFVVNAKEPVLGCFDQIRLQQVFTNLLNNAAQYRGDEMPVTMTLSSDADSATI 298 AVH C F ++ + G FD +RLQQVFTNLLNNAAQYRG E PVT+ +S TI Sbjct: 238 RAVHPECPFELSTTGDMSGSFDSVRLQQVFTNLLNNAAQYRGKEHPVTILAEGKTESVTI 297 Query: 299 SIQNSGALIPKEAIDAIFDPMVQLAIVPEQRERATTSLGLGLYIAKKIAEAHDGSIGVES 358 I+N G IP E++ IF P+VQL++ EQ R +TSLGLGL+IA++I AH G+I S Sbjct: 298 QIKNFGPAIPPESLQTIFQPLVQLSVEEEQAGRPSTSLGLGLFIAREITLAHGGTISATS 357 Query: 359 RDSTGTTFTVVIPKL 373 ++ GT T+ +P++ Sbjct: 358 DETNGTVMTLELPRV 372 >ref|YP_001098410.1| putative two-component sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 365 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 187/365 (51%), Positives = 252/365 (69%), Gaps = 5/365 (1%) Query: 11 MEKVLAEWDRFARTL--ELEELSSRTEVRNHAEQILRAIARDIDTEQSSEQQQRKSQGLS 68 ME++L EWD FA+TL E++SSR +R+HA QIL+ +A DID+EQS+ +Q KS+G+ Sbjct: 1 MEEILNEWDAFAQTLLPAAEDMSSRA-LRDHARQILQELAVDIDSEQSALEQAEKSKGMD 59 Query: 69 HSSVIASGASIYGTARQHDGFTLLQLTAEFRALRATVQRLWFSLGNALTPAHSADLIRFN 128 S S A+ +G RQ GF+LLQLT+E+RALRATV RLW +T + D++RFN Sbjct: 60 ISE--DSAAATHGELRQLSGFSLLQLTSEYRALRATVLRLWLPHVTQITEITTRDMVRFN 117 Query: 129 EAIDQALAESVGTYAAQASRAKDTFLAILGHDLRNPLATIALSSSLLGQPGMTKEGIALL 188 EAIDQ LAESV TY+ R +DTFLAILGHDLR+PLA +A++ L PG+ E + Sbjct: 118 EAIDQGLAESVVTYSESTVRTRDTFLAILGHDLRSPLAAMAMAGHYLALPGVGTEATLRV 177 Query: 189 APRIKRSASMMNSMINDLLEYARAELGGEMPMSFADVDMLDICHAAVVDASAVHAHCSFV 248 R+KRSA+ M +M+ND+LEYAR +LGGEMP++F D+ DI A++ DA AVH C F Sbjct: 178 GSRVKRSAATMTAMVNDMLEYARGQLGGEMPITFEQADLQDIFQASLHDARAVHPECPFE 237 Query: 249 VNAKEPVLGCFDQIRLQQVFTNLLNNAAQYRGDEMPVTMTLSSDADSATISIQNSGALIP 308 ++ + G FD +RLQQVFTNLLNNAAQYRG E PVT+ +S TI I+N G IP Sbjct: 238 LSTTGDMSGSFDSVRLQQVFTNLLNNAAQYRGKEHPVTILAEGKTESVTIQIKNFGPAIP 297 Query: 309 KEAIDAIFDPMVQLAIVPEQRERATTSLGLGLYIAKKIAEAHDGSIGVESRDSTGTTFTV 368 E++ IF P+VQL++ EQ R +TSLGLGL+IA++I AH G+I S ++ GT T+ Sbjct: 298 PESLQTIFQPLVQLSVEEEQAGRPSTSLGLGLFIAREITLAHGGTISATSDETNGTVMTL 357 Query: 369 VIPKL 373 +P++ Sbjct: 358 ELPRV 362 >ref|YP_257772.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5] gb|AAY96037.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5] Length = 377 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 153/375 (40%), Positives = 237/375 (63%), Gaps = 5/375 (1%) Query: 1 MKLSTFIISNMEKVLAEWDRFARTLELEELSSRTEVRNHAEQILRAIARDIDTEQSSEQQ 60 M+LS FI+ ++++++ EW++FAR+L + L+ RT++R+HA IL A ARD+ T QS +Q Sbjct: 1 MRLSDFIVQHVDRIVDEWEQFARSLAQDSLT-RTDLRDHARSILLAAARDMCTAQSPGEQ 59 Query: 61 QRKS--QGLSHSSVIASGASIYGTARQHDGFTLLQLTAEFRALRATVQRLWFSLGNALTP 118 + K+ +G + + + A+ +G R H GF L+Q+T+EFR LRA V RLW + Sbjct: 60 RAKAKGEGPEKTPSLDAAAASHGELRHHVGFDLVQMTSEFRHLRACVIRLWVASLQTPDL 119 Query: 119 AHSADLIRFNEAIDQALAESVGTYAAQASRAKDTFLAILGHDLRNPLATIALSSSLLGQP 178 A+ D+IRFNEAID+ALAES YA Q SR++D FLAILGHDLR PL +++S+ +L + Sbjct: 120 AYLQDMIRFNEAIDEALAESTAAYAEQVSRSRDIFLAILGHDLRAPLQAVSMSTEMLARK 179 Query: 179 GMTKEGIALLAPRIKRSASMMNSMINDLLEYARAELGGEMPMSFADVDMLDICHAAVVDA 238 RIK M +M++DLLE+ R+ LG +P+ A +D+ AA+ +A Sbjct: 180 VALDGDAQAFVSRIKSGTRHMGAMVSDLLEFVRSRLGSSLPIEPAPMDLASAAKAAMDEA 239 Query: 239 SAVHAHCSFVVNAKEPVLGCFDQIRLQQVFTNLLNNAAQYRGDEMPVTMTLSSDADSATI 298 A C+ +++ + G +D+ R++Q+ NL+ NA Q+ + VT+T++ A+ + Sbjct: 240 CAGQPDCTPLMSFEGDSHGIWDRGRIEQMLQNLIGNALQHGNNRRTVTVTITGGAEQVLL 299 Query: 299 SIQNSGALIPKEAIDAIFDPMVQLAIVPEQRERATTSLGLGLYIAKKIAEAHDGSIGVES 358 ++ N G IP EA+ +FDP+V+ V E+ +TSLGLGL+I K++ AH GSI V S Sbjct: 300 TVHNYGTPIPPEALGTLFDPLVR--SVDEELGNPSTSLGLGLFIVKEVVVAHQGSIEVSS 357 Query: 359 RDSTGTTFTVVIPKL 373 S GTTFTVV+P++ Sbjct: 358 NASDGTTFTVVLPRV 372 >gb|EGH80465.1| sensor histidine kinase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 375 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 156/372 (41%), Positives = 222/372 (59%), Gaps = 2/372 (0%) Query: 1 MKLSTFIISNMEKVLAEWDRFARTLE-LEELSSRTEVRNHAEQILRAIARDIDTEQSSEQ 59 M+LS FI+ N+E ++ EW FARTL L E TE+R+HAEQ+LRAIA D+ T+QSS+Q Sbjct: 1 MRLSGFILENIEAIVREWTDFARTLSALGEPLDTTELRDHAEQMLRAIATDLQTDQSSQQ 60 Query: 60 QQRKSQGLSHSSVIASGASIYGTARQHDGFTLLQLTAEFRALRATVQRLWFSLGNALTPA 119 Q KSQG S+ + A + R GFT+ Q+ +EFRALRA+V + W S Sbjct: 61 QVDKSQGHGVSNE-QTAAKSHAITRLMSGFTIDQVVSEFRALRASVIKQWMSRETQDAQQ 119 Query: 120 HSADLIRFNEAIDQALAESVGTYAAQASRAKDTFLAILGHDLRNPLATIALSSSLLGQPG 179 D+IRFNEAIDQALAES+ +Y +++ FL ILGHDLR PL+ I L + +L + Sbjct: 120 QIEDMIRFNEAIDQALAESITSYTGAVQASRNIFLGILGHDLRTPLSAILLGADVLLRTH 179 Query: 180 MTKEGIALLAPRIKRSASMMNSMINDLLEYARAELGGEMPMSFADVDMLDICHAAVVDAS 239 +A RI S N ++ DLL++ R+++G +P+ +VDM IC V ++S Sbjct: 180 DLGARPTKVASRIYSSVKRANQIVGDLLDFTRSQIGPGIPLKKTEVDMQPICTRIVDESS 239 Query: 240 AVHAHCSFVVNAKEPVLGCFDQIRLQQVFTNLLNNAAQYRGDEMPVTMTLSSDADSATIS 299 VH + + EPV+G FD RL+QVF+NL+ NA Q+ PV +TL+ + Sbjct: 240 TVHPEADIRLTSDEPVIGRFDGDRLEQVFSNLIGNAIQHGNSSDPVEVTLAVSESGLRFT 299 Query: 300 IQNSGALIPKEAIDAIFDPMVQLAIVPEQRERATTSLGLGLYIAKKIAEAHDGSIGVESR 359 + N+G+ IP++ + IF+PM + + +SLGLGL+I +I +AH G I V S+ Sbjct: 300 VHNTGSPIPEDVLPFIFNPMDRYSPEKMTDNGPYSSLGLGLFIVDRIVDAHGGRIEVTSK 359 Query: 360 DSTGTTFTVVIP 371 GTTF VVIP Sbjct: 360 ADLGTTFAVVIP 371 >ref|ZP_07261507.1| sensor histidine kinase [Pseudomonas syringae pv. syringae 642] Length = 375 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 223/374 (59%), Gaps = 6/374 (1%) Query: 1 MKLSTFIISNMEKVLAEWDRFARTLE-LEELSSRTEVRNHAEQILRAIARDIDTEQSSEQ 59 M+LS FI+ N+E ++ EW FARTL L E TE+R+H EQ+LRAIA D+ T+QS +Q Sbjct: 1 MRLSGFILENIEPIVREWTDFARTLSTLGEPLDTTELRDHVEQMLRAIATDLQTDQSLQQ 60 Query: 60 QQRKSQG--LSHSSVIASGASIYGTARQHDGFTLLQLTAEFRALRATVQRLWFSLGNALT 117 Q KSQG +SH + A I+ R GFT+ Q+ +EFRALRA+V + W S T Sbjct: 61 QVDKSQGHAVSHED---TAAKIHAITRLMSGFTIDQVVSEFRALRASVIKQWMSQEALDT 117 Query: 118 PAHSADLIRFNEAIDQALAESVGTYAAQASRAKDTFLAILGHDLRNPLATIALSSSLLGQ 177 D+IRFNEAIDQALAES+ +Y +++ FL ILGHDLR PL+ I L + +L + Sbjct: 118 QQQIEDMIRFNEAIDQALAESITSYTGAVQASRNIFLGILGHDLRTPLSAILLGADVLLR 177 Query: 178 PGMTKEGIALLAPRIKRSASMMNSMINDLLEYARAELGGEMPMSFADVDMLDICHAAVVD 237 +A RI S N ++ DLL++ R+++G +P+ +VDM IC V + Sbjct: 178 THDLGARPTKVASRIYSSVKRANQIVGDLLDFTRSQIGPGIPLKKTEVDMQPICARIVEE 237 Query: 238 ASAVHAHCSFVVNAKEPVLGCFDQIRLQQVFTNLLNNAAQYRGDEMPVTMTLSSDADSAT 297 +S VH + + +PV+G FD RL+QVF+NL+ NA Q+ PV +TL+ Sbjct: 238 SSTVHPEADIRLTSDDPVIGNFDGDRLEQVFSNLIGNAIQHGNSCDPVEVTLAVSESELR 297 Query: 298 ISIQNSGALIPKEAIDAIFDPMVQLAIVPEQRERATTSLGLGLYIAKKIAEAHDGSIGVE 357 ++ N+G+ IP++ + IF+PM + + +SLGLGL+I +I +AH G I V Sbjct: 298 FTVHNTGSPIPEDVLPFIFNPMDRYSPEKMTDNGPYSSLGLGLFIVDRIVDAHGGRIEVT 357 Query: 358 SRDSTGTTFTVVIP 371 S+ GTTF V+IP Sbjct: 358 SKVKLGTTFAVIIP 371