BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0297.p (390 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004680406.1| ferredoxin [Cupriavidus necator N-1] >gi|338... 555 e-156 ref|YP_728369.1| putative ferredoxin [Ralstonia eutropha H16] >g... 553 e-155 ref|YP_988251.1| CitB domain-containing protein [Acidovorax sp. ... 552 e-155 ref|YP_003981691.1| CitB domain-containing protein [Achromobacte... 552 e-155 ref|YP_001629375.1| citrate utilization protein B [Bordetella pe... 547 e-153 >ref|YP_004680406.1| ferredoxin [Cupriavidus necator N-1] gb|AEI79174.1| ferredoxin [Cupriavidus necator N-1] Length = 399 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 281/400 (70%), Positives = 319/400 (79%), Gaps = 11/400 (2%) Query: 1 MQQLEALTREARALA----------SGSYPVIPILSVNETEVGRQMTICNSCRYCEGFCA 50 MQ+LEAL REA LA S V+P L+ NE EV RQM ICN+CRYCEGFCA Sbjct: 1 MQKLEALAREAAQLAGQDAATPAPQSRIIRVLP-LTDNEAEVARQMQICNACRYCEGFCA 59 Query: 51 VFPAMTRRLEFGKADINYLANLCHNCGACLHACQYAPPHEFAVNVPQAMAKVRVETYADY 110 VFPAMTRRLEFGKAD+NYLANLCHNCGAC HACQYAPPH+F VNVPQAMAKVR+ETY++Y Sbjct: 60 VFPAMTRRLEFGKADVNYLANLCHNCGACYHACQYAPPHDFGVNVPQAMAKVRLETYSEY 119 Query: 111 AWPAALGALYKRNGLTLSLALVAGLALFLMLAAGLQGSLFHASAGGNFYSIFPHNLMVGL 170 AWPA LG LY+RNGLT+S+AL GLALFL+LAA L G+L+ A GNFY++FPHN + L Sbjct: 120 AWPAPLGKLYQRNGLTVSVALAFGLALFLVLAATLGGALWQTHARGNFYAVFPHNTLAAL 179 Query: 171 FAPIFLFAVLSLSLGVRRFWMDVSPGTATAAAMGDAADKVLRLKFLDGGHGEGCNNANDS 230 F +F FAVL+L LGVRRFW DVS GTA+A A+ +AA VL L +LDGGHG+GCN A+D Sbjct: 180 FGGVFAFAVLALGLGVRRFWRDVSAGTASAPAVAEAARNVLALTYLDGGHGDGCNEASDR 239 Query: 231 FTLARRRYHHFTFYGFMLCFAATSVATLYHYLFGWEAPYGLTSLPKLLGIAGGVSLLIGT 290 FTLARRR+HHFTFYGFMLCFA+T VAT YHYL GW APY + SLP LLG AGGV LL+G Sbjct: 240 FTLARRRFHHFTFYGFMLCFASTVVATGYHYLLGWHAPYPVMSLPVLLGTAGGVGLLVGP 299 Query: 291 VGLFVLNLSRHPLQGDAAQKPMDRGFISLLFLTAASGLTLMLSRGTPILGLTLCVHLGAV 350 GL LNL RHP+ GDA Q+PMDRGFI+LL LT+A+GL L+ RGT + L L VHLG V Sbjct: 300 AGLMWLNLRRHPMHGDARQRPMDRGFIALLLLTSATGLGLLAGRGTAAMPLLLAVHLGVV 359 Query: 351 MALFATLPYGKFAHGIFRSAALLKWAIEKRQPNSLQLGDD 390 MALFATLPYGKFAHGI+RSAALLK AIEKRQ N LQLG D Sbjct: 360 MALFATLPYGKFAHGIYRSAALLKAAIEKRQKNKLQLGSD 399 >ref|YP_728369.1| putative ferredoxin [Ralstonia eutropha H16] emb|CAJ95004.1| putative ferredoxin [Ralstonia eutropha H16] Length = 394 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 279/395 (70%), Positives = 318/395 (80%), Gaps = 11/395 (2%) Query: 1 MQQLEALTREARALA----------SGSYPVIPILSVNETEVGRQMTICNSCRYCEGFCA 50 MQ+LEALTREA LA S V+P L+ NE EV RQM ICN+CRYCEGFCA Sbjct: 1 MQKLEALTREAAQLAGQDAAAPAPQSRVIRVLP-LTDNEAEVARQMQICNACRYCEGFCA 59 Query: 51 VFPAMTRRLEFGKADINYLANLCHNCGACLHACQYAPPHEFAVNVPQAMAKVRVETYADY 110 VFPAMTRRLEFGKAD+NYLANLCHNCGAC HACQYAPPH+F VNVPQAMAKVR+ETY++Y Sbjct: 60 VFPAMTRRLEFGKADVNYLANLCHNCGACYHACQYAPPHDFGVNVPQAMAKVRLETYSEY 119 Query: 111 AWPAALGALYKRNGLTLSLALVAGLALFLMLAAGLQGSLFHASAGGNFYSIFPHNLMVGL 170 AWPA LG LY+RNGLT+S+AL GLALFL+LAA L G+L+ GGNFY++FPHN + L Sbjct: 120 AWPAPLGKLYQRNGLTVSVALAFGLALFLVLAATLGGALWQTHEGGNFYAVFPHNTLAAL 179 Query: 171 FAPIFLFAVLSLSLGVRRFWMDVSPGTATAAAMGDAADKVLRLKFLDGGHGEGCNNANDS 230 F +F FAVL+L LGVRRFW DVS GTA+A A+ +AA VL L +LDGGHG+GCN A+D Sbjct: 180 FGSVFGFAVLALGLGVRRFWRDVSAGTASAPAVAEAARNVLALTYLDGGHGDGCNEASDR 239 Query: 231 FTLARRRYHHFTFYGFMLCFAATSVATLYHYLFGWEAPYGLTSLPKLLGIAGGVSLLIGT 290 FTLARRR+HHFTFYGFMLCFA+T+VAT YHYL GW APY +TSLP LLG AGGV LL+G Sbjct: 240 FTLARRRFHHFTFYGFMLCFASTAVATGYHYLLGWHAPYPVTSLPVLLGTAGGVGLLVGP 299 Query: 291 VGLFVLNLSRHPLQGDAAQKPMDRGFISLLFLTAASGLTLMLSRGTPILGLTLCVHLGAV 350 GL LNL RHP+ GDA Q+PMDRGFI+LL LT+A+GL L+ RGT + L L VHLG V Sbjct: 300 AGLLWLNLRRHPMHGDARQRPMDRGFIALLLLTSATGLGLLAGRGTAAMPLLLAVHLGVV 359 Query: 351 MALFATLPYGKFAHGIFRSAALLKWAIEKRQPNSL 385 MALFATLPYGKFAHGI+RSAALLK AIEKRQ N L Sbjct: 360 MALFATLPYGKFAHGIYRSAALLKSAIEKRQKNKL 394 >ref|YP_988251.1| CitB domain-containing protein [Acidovorax sp. JS42] gb|ABM44175.1| CitB domain protein [Acidovorax sp. JS42] Length = 408 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 282/408 (69%), Positives = 326/408 (79%), Gaps = 18/408 (4%) Query: 1 MQQLEALTREARALASGSYP-VIPIL-----SVNETEVGRQMTICNSCRYCEGFCAVFPA 54 MQ L++LT EA LA G VIPI+ S ETEV RQM ICN+CRYCEGFCAVFPA Sbjct: 1 MQTLKSLTDEAIGLAQGGPARVIPIVPAPAQSAAETEVARQMQICNACRYCEGFCAVFPA 60 Query: 55 MTRRLEFGKADINYLANLCHNCGACLHACQYAPPHEFAVNVPQAMAKVRVETYADYAWPA 114 MTRRL+F +AD++YLANLCHNCGACLHACQYAPPHEFAVN+PQAMA+VR +TYADYAWP Sbjct: 61 MTRRLDFTQADVHYLANLCHNCGACLHACQYAPPHEFAVNIPQAMAQVRGQTYADYAWPP 120 Query: 115 ALGALYKRNGLTLSLALVAGLALFLMLAAGLQGSLFHASA----GGNFYSIFPHNLMVGL 170 ALG LY+RNGLTLSLALVA L LFL+L A LQG A GGNFY +FPHNL+VGL Sbjct: 121 ALGRLYRRNGLTLSLALVAALTLFLVLGAALQGGGLGALWGADLGGNFYRLFPHNLLVGL 180 Query: 171 FAPIFLFAVLSLSLGVRRFWMDVSPGTA----TAAAMGDAADKVLRLKFLDGGHGEGCNN 226 FAP+FLF VL+LS+GVRRFW DV P T+ +A A +AA VLRLK+LDGGHG+GC+N Sbjct: 181 FAPVFLFVVLALSMGVRRFWKDVKPATSGADVSAPAATEAAHDVLRLKYLDGGHGDGCHN 240 Query: 227 ANDSFTLARRRYHHFTFYGFMLCFAATSVATLYHYLFGWEAPYGLTSLPKLLGIAGGVSL 286 +D++TL RRR HH TFYGF+LCFAATS+AT+YHY+FGW APY S+PKLLG+AGGV L Sbjct: 241 EDDAYTLKRRRAHHLTFYGFLLCFAATSLATVYHYVFGWPAPYEAPSIPKLLGVAGGVML 300 Query: 287 LIGTVGLFVLNLSRHPLQGDAAQKPMDRGFISLLFLTAASGLTLMLSRGT----PILGLT 342 ++GT+GL+ LN +RHP GDAAQKPMD GFI+LLFL AASGL L L R T P L L Sbjct: 301 VLGTIGLWYLNRTRHPAHGDAAQKPMDLGFIALLFLVAASGLALWLVRITPSAAPALALV 360 Query: 343 LCVHLGAVMALFATLPYGKFAHGIFRSAALLKWAIEKRQPNSLQLGDD 390 LC+HLGAVMALFATLPYGKFAHG+FR+AALL+ EKRQPN + LG D Sbjct: 361 LCLHLGAVMALFATLPYGKFAHGVFRTAALLRHTTEKRQPNPIGLGSD 408 >ref|YP_003981691.1| CitB domain-containing protein [Achromobacter xylosoxidans A8] gb|ADP18976.1| CitB domain protein [Achromobacter xylosoxidans A8] Length = 409 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 278/409 (67%), Positives = 316/409 (77%), Gaps = 19/409 (4%) Query: 1 MQQLEALTREA-------------------RALASGSYPVIPILSVNETEVGRQMTICNS 41 M+QLEAL REA R L + P +L+ +ETEV R M ICN+ Sbjct: 1 MKQLEALAREAQSFSTPHAEAAPVMAEQPVRWLGKQAKPQAELLTGDETEVARVMQICNA 60 Query: 42 CRYCEGFCAVFPAMTRRLEFGKADINYLANLCHNCGACLHACQYAPPHEFAVNVPQAMAK 101 CRYCEGFCAVFPAMTRRLEFGKAD+NYLANLCHNCGACLHACQYAPPHEFAVNVPQAMA+ Sbjct: 61 CRYCEGFCAVFPAMTRRLEFGKADLNYLANLCHNCGACLHACQYAPPHEFAVNVPQAMAR 120 Query: 102 VRVETYADYAWPAALGALYKRNGLTLSLALVAGLALFLMLAAGLQGSLFHASAGGNFYSI 161 VR++TY DYAWPAALGALYKRNGL LSLA AGLALFL LA + G LFH GNFY++ Sbjct: 121 VRMQTYTDYAWPAALGALYKRNGLVLSLATAAGLALFLTLAVLMAGGLFHEPMAGNFYAV 180 Query: 162 FPHNLMVGLFAPIFLFAVLSLSLGVRRFWMDVSPGTATAAAMGDAADKVLRLKFLDGGHG 221 FPHN + +F +F F++L+L +GV RFW +VSPG AT AA+ +AA LRL++LDGGHG Sbjct: 181 FPHNTLALMFGVVFGFSMLALGVGVTRFWRNVSPGAATGAAVAEAAHDALRLRYLDGGHG 240 Query: 222 EGCNNANDSFTLARRRYHHFTFYGFMLCFAATSVATLYHYLFGWEAPYGLTSLPKLLGIA 281 +GCNNA+D+FTL RRR+HHFTFYGFMLCFAAT VATLYHYL +APY S P LLG A Sbjct: 241 KGCNNADDAFTLWRRRFHHFTFYGFMLCFAATCVATLYHYLLDLQAPYPFWSAPVLLGTA 300 Query: 282 GGVSLLIGTVGLFVLNLSRHPLQGDAAQKPMDRGFISLLFLTAASGLTLMLSRGTPILGL 341 GG+ LLIG GL LN RHP QGDAAQKPMDRGFI+LLFLT+A+GL L+ R + L Sbjct: 301 GGIGLLIGPAGLLWLNFKRHPQQGDAAQKPMDRGFIALLFLTSATGLALLAGRDGGAMAL 360 Query: 342 TLCVHLGAVMALFATLPYGKFAHGIFRSAALLKWAIEKRQPNSLQLGDD 390 L +HLG VMALF TLPYGKFAHGI+RSAALLKWAIEKRQPN LQLG D Sbjct: 361 LLAIHLGVVMALFLTLPYGKFAHGIYRSAALLKWAIEKRQPNKLQLGSD 409 >ref|YP_001629375.1| citrate utilization protein B [Bordetella petrii DSM 12804] emb|CAP41104.1| citrate utilization protein B [Bordetella petrii] Length = 380 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 277/390 (71%), Positives = 319/390 (81%), Gaps = 10/390 (2%) Query: 1 MQQLEALTREARALASGSYPVIPILSVNETEVGRQMTICNSCRYCEGFCAVFPAMTRRLE 60 M+QLE LTR+AR +LS NETEV R M ICN+CRYCEGFCAVFPAMTRRLE Sbjct: 1 MKQLEELTRQARG----------VLSNNETEVARVMQICNACRYCEGFCAVFPAMTRRLE 50 Query: 61 FGKADINYLANLCHNCGACLHACQYAPPHEFAVNVPQAMAKVRVETYADYAWPAALGALY 120 FGKADINYLANLCHNCGACLHACQYAPPHEF+VNVPQAMAKVRV+TY DYAWPAALG LY Sbjct: 51 FGKADINYLANLCHNCGACLHACQYAPPHEFSVNVPQAMAKVRVQTYTDYAWPAALGKLY 110 Query: 121 KRNGLTLSLALVAGLALFLMLAAGLQGSLFHASAGGNFYSIFPHNLMVGLFAPIFLFAVL 180 +RNGLTLSLA+ LALFL+LAA + G L H GNFY+IFPHN + +F +FLFA++ Sbjct: 111 RRNGLTLSLAVAGALALFLVLAAAMAGGLLHEPLAGNFYAIFPHNTLALMFGLVFLFAIV 170 Query: 181 SLSLGVRRFWMDVSPGTATAAAMGDAADKVLRLKFLDGGHGEGCNNANDSFTLARRRYHH 240 +L +GV RFW DVSPG A+ AA+ +A LRL++LDGGHG+GCNNA+D+FTLARRR+HH Sbjct: 171 ALGVGVARFWRDVSPGAASGAAVAEATHDALRLRYLDGGHGKGCNNADDAFTLARRRFHH 230 Query: 241 FTFYGFMLCFAATSVATLYHYLFGWEAPYGLTSLPKLLGIAGGVSLLIGTVGLFVLNLSR 300 TFYGFMLCFAAT VATLYHY FGW+APY +TSLP LLG GG+ LL+G GL LN+ R Sbjct: 231 LTFYGFMLCFAATCVATLYHYAFGWQAPYPVTSLPVLLGTVGGIGLLVGPAGLLWLNVKR 290 Query: 301 HPLQGDAAQKPMDRGFISLLFLTAASGLTLMLSRGTPILGLTLCVHLGAVMALFATLPYG 360 HPLQGDAAQ+PMDRGFI+LLFL + +GL L+ R TP +GL L +HLG VMALF TLPYG Sbjct: 291 HPLQGDAAQRPMDRGFIALLFLVSLTGLLLLGLRDTPAMGLLLAIHLGMVMALFLTLPYG 350 Query: 361 KFAHGIFRSAALLKWAIEKRQPNSLQLGDD 390 KFAHGI+R AALLKWAIEKRQP+ L+LG D Sbjct: 351 KFAHGIYRCAALLKWAIEKRQPDPLKLGAD 380