BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0296.p (467 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002945018.1| tricarballylate dehydrogenase [Variovorax pa... 849 0.0 ref|YP_004688048.1| succinate dehydrogenase/fumarate reductase,f... 826 0.0 ref|YP_728370.1| tricarballylate dehydrogenase [Ralstonia eutrop... 825 0.0 ref|YP_586346.1| tricarballylate dehydrogenase [Cupriavidus meta... 819 0.0 ref|YP_004680407.1| succinate dehydrogenase/fumarate reductase,f... 815 0.0 >ref|YP_002945018.1| tricarballylate dehydrogenase [Variovorax paradoxus S110] gb|ACS19752.1| precorrin 3B synthase CobZ [Variovorax paradoxus S110] Length = 476 Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/461 (86%), Positives = 432/461 (93%) Query: 1 MVDVLVIGGGNAALCAALMAREAGASVLLLEASPREWRGGNSQHTRNLRCMHDGPQDVLI 60 M+DVLV+GGGNAALCAALMAREAGASVLLLEASP+EWRGGNSQHTRNLRCMHD PQDVL+ Sbjct: 1 MIDVLVVGGGNAALCAALMAREAGASVLLLEASPKEWRGGNSQHTRNLRCMHDAPQDVLV 60 Query: 61 DAYPEEEYWQDLLKVTGGVTDEKLARLAIRASSTCRNWMRRHGVHFQPPLSGALHVARTN 120 DAYPEEEYWQDLLKVTGG+TDE LARL IRASS CR+WMR HGVHFQPPLSGALHVARTN Sbjct: 61 DAYPEEEYWQDLLKVTGGLTDEHLARLVIRASSNCRDWMRSHGVHFQPPLSGALHVARTN 120 Query: 121 AFFMGGGKALVNAYFRSAEKLGVQVRYDTPVVSVELDGERFVAVHTAKGERVTAKSCVLA 180 AFFMGGGKALVNAYFRSAEKLGVQ+RY+TPV SVELDGERFVAV T GER+ A+SCVLA Sbjct: 121 AFFMGGGKALVNAYFRSAEKLGVQIRYETPVASVELDGERFVAVRTEAGERIEARSCVLA 180 Query: 181 AGGFESNREWLREAWGQNARGEWPSDNFLIRGTRFNEGVLLKYMINAGADAIGDPTQAHM 240 AGGFESNREWLREAWG+N RGEWP+DNFL+RGTRFN+GVLLKYMI+AGAD+IGDP+Q HM Sbjct: 181 AGGFESNREWLREAWGRNERGEWPADNFLVRGTRFNQGVLLKYMIDAGADSIGDPSQGHM 240 Query: 241 VAIDARAPLYDGGICTRIDCVSLGVVVNREGERFYDEGEDFWPKRYAIWGRLVAQQPGQI 300 VAIDARAPLYDGGICTRIDCVSLGV+VNRE +RFYDEGEDFWPKRYAIWGRLVAQQPGQI Sbjct: 241 VAIDARAPLYDGGICTRIDCVSLGVMVNREAQRFYDEGEDFWPKRYAIWGRLVAQQPGQI 300 Query: 301 SYSIIDQKAIGRFMPPVFPGTTANTLLELAQKLGLPEQVFIKTMDDYNAACRLGNFDHTA 360 ++S+IDQKA+GRFMPPVF GT A+TL ELAQK+GL E F++T+ DYNAACR+G FDHTA Sbjct: 301 AWSVIDQKAVGRFMPPVFTGTQASTLGELAQKIGLDEATFVRTVQDYNAACRVGRFDHTA 360 Query: 361 LDDCRTEGLMPAKTHWARPINTAPFYGYALKPGVTFTYLGLKVNERAAVHFGGRPSPNLF 420 LDDC TEG+ PAKTHWARPI+TAPFY Y L+PG+TFTYLGLKV+E AAV FGGRPSPNLF Sbjct: 361 LDDCHTEGIAPAKTHWARPIDTAPFYAYPLRPGITFTYLGLKVDETAAVRFGGRPSPNLF 420 Query: 421 VAGEMMAGNVLGKGYTAGVGMAIGTAFGRIAGTQAAAAAKK 461 VAGEMMAGNVLGKGYTAGVGM+IGTAFGRIAGTQAA AAK Sbjct: 421 VAGEMMAGNVLGKGYTAGVGMSIGTAFGRIAGTQAARAAKN 461 >ref|YP_004688048.1| succinate dehydrogenase/fumarate reductase,flavoprotein [Cupriavidus necator N-1] gb|AEI82010.1| succinate dehydrogenase/fumarate reductase,flavoprotein [Cupriavidus necator N-1] Length = 469 Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/459 (84%), Positives = 425/459 (92%), Gaps = 1/459 (0%) Query: 1 MVDVLVIGGGNAALCAALMAREAGASVLLLEASPREWRGGNSQHTRNLRCMHDGPQDVLI 60 M+DVLVIGGGNAALCAALMAREAG SVLLLE++PR WRGGNSQHTRNLRCMHD PQDVL+ Sbjct: 1 MIDVLVIGGGNAALCAALMAREAGVSVLLLESAPRAWRGGNSQHTRNLRCMHDAPQDVLV 60 Query: 61 DAYPEEEYWQDLLKVTGGVTDEKLARLAIRASSTCRNWMRRHGVHFQPPLSGALHVARTN 120 DAYPEEEYWQDLLKVTGG+TDE LARLAIRASSTCR WMRRHGV FQPPLSGALHVARTN Sbjct: 61 DAYPEEEYWQDLLKVTGGITDEHLARLAIRASSTCRPWMRRHGVRFQPPLSGALHVARTN 120 Query: 121 AFFMGGGKALVNAYFRSAEKLGVQVRYDTPVVSVELDGERFVAVHTAKGERVTAKSCVLA 180 AFFMGGGKALVNAY+RSAE +GVQ+RYDTPV S+ELDG+RFVA + R TA++CVLA Sbjct: 121 AFFMGGGKALVNAYYRSAEAMGVQIRYDTPVDSIELDGDRFVAARSGD-MRFTARTCVLA 179 Query: 181 AGGFESNREWLREAWGQNARGEWPSDNFLIRGTRFNEGVLLKYMINAGADAIGDPTQAHM 240 AGGFESNREWLREAWGQN RGEWP+DNFLIRGTRFN+GVLL++MI +GADAIGDP+Q+H Sbjct: 180 AGGFESNREWLREAWGQNERGEWPADNFLIRGTRFNQGVLLQHMIESGADAIGDPSQSHC 239 Query: 241 VAIDARAPLYDGGICTRIDCVSLGVVVNREGERFYDEGEDFWPKRYAIWGRLVAQQPGQI 300 VAIDARAPLYDGGICTRIDCVSLGVVVNR+ ERFYDEGEDFWPKRYAIWGRLVAQQPGQI Sbjct: 240 VAIDARAPLYDGGICTRIDCVSLGVVVNRDAERFYDEGEDFWPKRYAIWGRLVAQQPGQI 299 Query: 301 SYSIIDQKAIGRFMPPVFPGTTANTLLELAQKLGLPEQVFIKTMDDYNAACRLGNFDHTA 360 YSIID +AIGRFMPPVFPG A+TL ELA+KLGLPE F++T+ DYNAACR+G FDHTA Sbjct: 300 GYSIIDSQAIGRFMPPVFPGEKADTLPELARKLGLPEAQFVRTVQDYNAACRVGTFDHTA 359 Query: 361 LDDCRTEGLMPAKTHWARPINTAPFYGYALKPGVTFTYLGLKVNERAAVHFGGRPSPNLF 420 LDDC TEGL PAKTHWARP++ APFYGYAL+PG+TFTYLGLKVN+RA VHFGG+PS NLF Sbjct: 360 LDDCHTEGLAPAKTHWARPLDRAPFYGYALRPGITFTYLGLKVNDRAQVHFGGKPSGNLF 419 Query: 421 VAGEMMAGNVLGKGYTAGVGMAIGTAFGRIAGTQAAAAA 459 VAGEMMAGNVLGKGYTAGVGM+IGTAFGRIAGTQAA AA Sbjct: 420 VAGEMMAGNVLGKGYTAGVGMSIGTAFGRIAGTQAALAA 458 >ref|YP_728370.1| tricarballylate dehydrogenase [Ralstonia eutropha H16] emb|CAJ95005.1| succinate dehydrogenase/fumarate reductase,flavoprotein [Ralstonia eutropha H16] Length = 469 Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/459 (84%), Positives = 427/459 (93%), Gaps = 1/459 (0%) Query: 1 MVDVLVIGGGNAALCAALMAREAGASVLLLEASPREWRGGNSQHTRNLRCMHDGPQDVLI 60 MVDVLVIGGGNAALCAALMAREAGASVLLLE++PR WRGGNSQHTRNLRCMHD PQDVL+ Sbjct: 1 MVDVLVIGGGNAALCAALMAREAGASVLLLESAPRAWRGGNSQHTRNLRCMHDAPQDVLV 60 Query: 61 DAYPEEEYWQDLLKVTGGVTDEKLARLAIRASSTCRNWMRRHGVHFQPPLSGALHVARTN 120 DAYPEEEYWQDLLKVTGG+TDE LARL IRASSTCR WMRRHGV FQPPLSGALHVARTN Sbjct: 61 DAYPEEEYWQDLLKVTGGITDEHLARLVIRASSTCRPWMRRHGVRFQPPLSGALHVARTN 120 Query: 121 AFFMGGGKALVNAYFRSAEKLGVQVRYDTPVVSVELDGERFVAVHTAKGERVTAKSCVLA 180 AFFMGGGKALVNAY+RSAE +GVQVRY+TPV ++ELDG+RFVA + +R TA++CVLA Sbjct: 121 AFFMGGGKALVNAYYRSAEAMGVQVRYETPVDAIELDGDRFVAARSGS-QRFTARACVLA 179 Query: 181 AGGFESNREWLREAWGQNARGEWPSDNFLIRGTRFNEGVLLKYMINAGADAIGDPTQAHM 240 AGGFESNREWLREAWG+N RGEWP+DNFLIRGTRFN+GVLL+YMI+AGADAIGDP+Q+H Sbjct: 180 AGGFESNREWLREAWGRNERGEWPADNFLIRGTRFNQGVLLRYMIDAGADAIGDPSQSHC 239 Query: 241 VAIDARAPLYDGGICTRIDCVSLGVVVNREGERFYDEGEDFWPKRYAIWGRLVAQQPGQI 300 VAIDARAPLYDGGICTRIDCVSLGVVVNR+ RFYDEGEDFWPKRYAIWGRLVAQQPGQI Sbjct: 240 VAIDARAPLYDGGICTRIDCVSLGVVVNRDAVRFYDEGEDFWPKRYAIWGRLVAQQPGQI 299 Query: 301 SYSIIDQKAIGRFMPPVFPGTTANTLLELAQKLGLPEQVFIKTMDDYNAACRLGNFDHTA 360 YSIID KAIGRFMPPVFPG A+TL ELA+KLGLPE F++T+ DYNAACR+G+FDHTA Sbjct: 300 GYSIIDSKAIGRFMPPVFPGEKADTLPELARKLGLPEAQFVRTVQDYNAACRVGSFDHTA 359 Query: 361 LDDCRTEGLMPAKTHWARPINTAPFYGYALKPGVTFTYLGLKVNERAAVHFGGRPSPNLF 420 LDDC TEGL PAKTHWARP++ APFYGYAL+PG+TFTYLGLKVN+RA +HFGG+PS NLF Sbjct: 360 LDDCHTEGLAPAKTHWARPLDQAPFYGYALRPGITFTYLGLKVNDRAQMHFGGKPSGNLF 419 Query: 421 VAGEMMAGNVLGKGYTAGVGMAIGTAFGRIAGTQAAAAA 459 VAGEMMAGNVLGKGYTAGVGM+IGTAFGRIAGTQAA AA Sbjct: 420 VAGEMMAGNVLGKGYTAGVGMSIGTAFGRIAGTQAALAA 458 >ref|YP_586346.1| tricarballylate dehydrogenase [Cupriavidus metallidurans CH34] gb|ABF11077.1| tricarballylate dehydrogenase [Cupriavidus metallidurans CH34] Length = 477 Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/460 (83%), Positives = 421/460 (91%), Gaps = 1/460 (0%) Query: 1 MVDVLVIGGGNAALCAALMAREAGASVLLLEASPREWRGGNSQHTRNLRCMHDGPQDVLI 60 M+DVLVIGGGNAALCAALMAREAGASV+LLEA+PREWRGGNS HTRNLRCMHD PQDVL+ Sbjct: 1 MIDVLVIGGGNAALCAALMAREAGASVMLLEAAPREWRGGNSSHTRNLRCMHDAPQDVLV 60 Query: 61 DAYPEEEYWQDLLKVTGGVTDEKLARLAIRASSTCRNWMRRHGVHFQPPLSGALHVARTN 120 DAYPEEEYWQDLLKVTGG+TDEKLARLAIRASS+CR+WMR HGVHFQPPLSGALHVARTN Sbjct: 61 DAYPEEEYWQDLLKVTGGLTDEKLARLAIRASSSCRDWMRSHGVHFQPPLSGALHVARTN 120 Query: 121 AFFMGGGKALVNAYFRSAEKLGVQVRYDTPVVSVELDGERFVAVHTAKGERVTAKSCVLA 180 AFFMGGGKALVNAY+RSAE LGVQ+RY+ PV ++ELDG RFVA ER+ A++CVLA Sbjct: 121 AFFMGGGKALVNAYYRSAEALGVQIRYNAPVDAIELDGSRFVAARIG-AERIEARACVLA 179 Query: 181 AGGFESNREWLREAWGQNARGEWPSDNFLIRGTRFNEGVLLKYMINAGADAIGDPTQAHM 240 AGGFESNREWLREAWGQN RGEWP+DNFLIRGTRFN GVLLK+MI AGADAIGDP+Q+H Sbjct: 180 AGGFESNREWLREAWGQNERGEWPADNFLIRGTRFNMGVLLKHMIAAGADAIGDPSQSHC 239 Query: 241 VAIDARAPLYDGGICTRIDCVSLGVVVNREGERFYDEGEDFWPKRYAIWGRLVAQQPGQI 300 VAIDARAPLYDGGICTRIDCVSLGVV+N ERFYDEGEDFWPKRYAIWGRLVAQQP QI Sbjct: 240 VAIDARAPLYDGGICTRIDCVSLGVVLNANAERFYDEGEDFWPKRYAIWGRLVAQQPQQI 299 Query: 301 SYSIIDQKAIGRFMPPVFPGTTANTLLELAQKLGLPEQVFIKTMDDYNAACRLGNFDHTA 360 YSIID KAIGRFMPPVFPG A+TL ELA+KLGL E F++T++ YNAACR+G FDHT Sbjct: 300 GYSIIDAKAIGRFMPPVFPGVKADTLPELARKLGLDEATFMRTINAYNAACRVGKFDHTV 359 Query: 361 LDDCRTEGLMPAKTHWARPINTAPFYGYALKPGVTFTYLGLKVNERAAVHFGGRPSPNLF 420 LDDC TEG+ P+KTHWARP++TAPF+GYAL+PG+TFTYLGLKVNE +AVHF GRPS NLF Sbjct: 360 LDDCHTEGVTPSKTHWARPLDTAPFFGYALRPGITFTYLGLKVNEESAVHFDGRPSDNLF 419 Query: 421 VAGEMMAGNVLGKGYTAGVGMAIGTAFGRIAGTQAAAAAK 460 VAGEMMAGNVLGKGYTAGVGMAIGTAFGRIAGTQAA AAK Sbjct: 420 VAGEMMAGNVLGKGYTAGVGMAIGTAFGRIAGTQAAKAAK 459 >ref|YP_004680407.1| succinate dehydrogenase/fumarate reductase,flavoprotein [Cupriavidus necator N-1] gb|AEI79175.1| succinate dehydrogenase/fumarate reductase,flavoprotein [Cupriavidus necator N-1] Length = 469 Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/459 (83%), Positives = 423/459 (92%), Gaps = 1/459 (0%) Query: 1 MVDVLVIGGGNAALCAALMAREAGASVLLLEASPREWRGGNSQHTRNLRCMHDGPQDVLI 60 MVDVLVIGGGNAALCAALMAREAGASVLLLE++PR WRGGNSQHTRNLRCMHD PQDVL+ Sbjct: 1 MVDVLVIGGGNAALCAALMAREAGASVLLLESAPRAWRGGNSQHTRNLRCMHDAPQDVLV 60 Query: 61 DAYPEEEYWQDLLKVTGGVTDEKLARLAIRASSTCRNWMRRHGVHFQPPLSGALHVARTN 120 DAYPEEEYWQDLLKVTGG+TDE LARL IRASSTCR WMRRHGV FQPPLSGALHVARTN Sbjct: 61 DAYPEEEYWQDLLKVTGGITDENLARLVIRASSTCRPWMRRHGVRFQPPLSGALHVARTN 120 Query: 121 AFFMGGGKALVNAYFRSAEKLGVQVRYDTPVVSVELDGERFVAVHTAKGERVTAKSCVLA 180 AFFMGGGKALVNAY+RSAE +GVQVRY+TPV ++ELDG+RFVA + +R TA++CVLA Sbjct: 121 AFFMGGGKALVNAYYRSAEAMGVQVRYETPVDTIELDGDRFVAARSGS-QRFTARTCVLA 179 Query: 181 AGGFESNREWLREAWGQNARGEWPSDNFLIRGTRFNEGVLLKYMINAGADAIGDPTQAHM 240 AGGFESNREWLREAWGQN RGEWP+DNFLIRGTRFN+GVLL++MI+AGAD IGDP+Q+H Sbjct: 180 AGGFESNREWLREAWGQNERGEWPADNFLIRGTRFNQGVLLRHMIDAGADTIGDPSQSHC 239 Query: 241 VAIDARAPLYDGGICTRIDCVSLGVVVNREGERFYDEGEDFWPKRYAIWGRLVAQQPGQI 300 VAIDARAPLYDGGICTRIDCVSLG+VVN + RFYDEGEDFWPKRYAIWGRLVAQQPGQI Sbjct: 240 VAIDARAPLYDGGICTRIDCVSLGIVVNCDAVRFYDEGEDFWPKRYAIWGRLVAQQPGQI 299 Query: 301 SYSIIDQKAIGRFMPPVFPGTTANTLLELAQKLGLPEQVFIKTMDDYNAACRLGNFDHTA 360 YSIID +AIGRFMPPVFPG A+TL ELA+KLGLPE F++T+ D+NAACR+G FDHTA Sbjct: 300 GYSIIDSQAIGRFMPPVFPGEKADTLPELARKLGLPEAQFVRTVQDHNAACRVGTFDHTA 359 Query: 361 LDDCRTEGLMPAKTHWARPINTAPFYGYALKPGVTFTYLGLKVNERAAVHFGGRPSPNLF 420 LDDC TEGL PAKTHWARP++ APFYGYAL+PG+TFTYLGLKVN+ A VHFGG+PS NLF Sbjct: 360 LDDCHTEGLAPAKTHWARPLDQAPFYGYALRPGITFTYLGLKVNDCAQVHFGGKPSGNLF 419 Query: 421 VAGEMMAGNVLGKGYTAGVGMAIGTAFGRIAGTQAAAAA 459 VAGEMMAGNVLGKGYTAGVGM+IGTAFGRIAGTQAA AA Sbjct: 420 VAGEMMAGNVLGKGYTAGVGMSIGTAFGRIAGTQAALAA 458