BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0295.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EGD03673.1| LysR family transcriptional regulator [Burkholder... 328 3e-88 ref|YP_003911212.1| LysR family transcriptional regulator [Burkh... 325 3e-87 ref|YP_299341.1| LysR family transcriptional regulator [Ralstoni... 325 3e-87 ref|YP_001586083.1| LysR family transcriptional regulator [Burkh... 325 4e-87 ref|YP_001889344.1| LysR family transcriptional regulator [Burkh... 323 1e-86 >gb|EGD03673.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 300 Score = 328 bits (842), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 167/260 (64%), Positives = 209/260 (80%) Query: 1 LLQRTTTGVVPTDAGLAFWHQAQLALRHVDEAARAAQHARMSGHVSVGFAPSTASVLALT 60 LLQRT+ GVVPTDAGLAFW QAQLALRH+D AA AA+ AR+SGHVSVG APSTASVL + Sbjct: 30 LLQRTSAGVVPTDAGLAFWRQAQLALRHIDAAALAARSARLSGHVSVGMAPSTASVLGVA 89 Query: 61 FMNGLRARYPDIRLHLVESLSGNLATMLNARQLDLAILFETDVAKRLSATPLLDERLFVV 120 FM +RARYPD+RLHLVESLSG LA+ML+ARQ+DLA+LF + A+R S LLDERLF++ Sbjct: 90 FMQAMRARYPDVRLHLVESLSGYLASMLSARQIDLAVLFRAEPAQRWSVMSLLDERLFII 149 Query: 121 GSHQLIGMPKGKQVRLKDIGALPLVMPSGTHGLRAIVATAFAQAKREPNIVAEIDGLAIL 180 G+ L GMP VRLK++G LPL++PSGTHGLR+++++AF +A EPNIVAE+DGLA+L Sbjct: 150 GAGDLEGMPTSASVRLKNLGKLPLILPSGTHGLRSLLSSAFTRAAYEPNIVAEVDGLALL 209 Query: 181 MDVVRAGLAATIQPGAAASRLPASVVRLVQVADKGVRRRNLLASLPEDELSPAALATRIV 240 MD VR G+ ATIQPGAA +R ++++ V VA+K R N++AS+ +DELSPA LA R+V Sbjct: 210 MDAVRKGIGATIQPGAALARAENAMLKSVPVAEKYATRPNMIASISDDELSPAGLAARVV 269 Query: 241 LKDVVRELLSESHWMGASLH 260 L DV R+L+SE W GA LH Sbjct: 270 LADVARQLVSEGRWPGARLH 289 >ref|YP_003911212.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN61921.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 317 Score = 325 bits (834), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 170/261 (65%), Positives = 211/261 (80%) Query: 1 LLQRTTTGVVPTDAGLAFWHQAQLALRHVDEAARAAQHARMSGHVSVGFAPSTASVLALT 60 LLQRT+ GVVPTDAGLAFW QAQLALRH+D+AA AA+ AR+SGHVSVG APSTASVL + Sbjct: 47 LLQRTSAGVVPTDAGLAFWRQAQLALRHIDDAALAARSARLSGHVSVGMAPSTASVLGVA 106 Query: 61 FMNGLRARYPDIRLHLVESLSGNLATMLNARQLDLAILFETDVAKRLSATPLLDERLFVV 120 FM +R RYPD+RLH+VESLSG LA+ML+ARQ+DLA+LF + A+RLS PLLDERLF++ Sbjct: 107 FMQAMRTRYPDVRLHMVESLSGYLASMLSARQIDLAVLFREEPAQRLSLMPLLDERLFLI 166 Query: 121 GSHQLIGMPKGKQVRLKDIGALPLVMPSGTHGLRAIVATAFAQAKREPNIVAEIDGLAIL 180 G+ +L GMP G VRLK++G LPL++PSG HGLR+++A+AF +A+ EPNIVAE+DGLA+L Sbjct: 167 GAGELDGMPVGASVRLKNLGRLPLILPSGAHGLRSLLASAFKRAEHEPNIVAEVDGLALL 226 Query: 181 MDVVRAGLAATIQPGAAASRLPASVVRLVQVADKGVRRRNLLASLPEDELSPAALATRIV 240 MD VR+GL ATIQPGAA +R V+ V VA+K R N++AS+ +DELSPA LA R+V Sbjct: 227 MDFVRSGLGATIQPGAALARPENLVLTSVPVAEKYATRPNMIASISDDELSPAGLAARVV 286 Query: 241 LKDVVRELLSESHWMGASLHE 261 L DVVR L+ E W GA L E Sbjct: 287 LADVVRRLVQEGRWPGARLRE 307 >ref|YP_299341.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ64497.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 308 Score = 325 bits (834), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 162/262 (61%), Positives = 200/262 (76%) Query: 1 LLQRTTTGVVPTDAGLAFWHQAQLALRHVDEAARAAQHARMSGHVSVGFAPSTASVLALT 60 LLQRT+ GVVPTDAGLAFW QAQLA+RH D+A RAAQ AR+SGHVSVG APST SVL L Sbjct: 47 LLQRTSAGVVPTDAGLAFWRQAQLAVRHADDAVRAAQLARLSGHVSVGMAPSTISVLGLP 106 Query: 61 FMNGLRARYPDIRLHLVESLSGNLATMLNARQLDLAILFETDVAKRLSATPLLDERLFVV 120 FM +R RYPDIRLHLVESLSGNLATM++ RQLDLA+LF+ D R S PLL ERLF++ Sbjct: 107 FMQAMRDRYPDIRLHLVESLSGNLATMIDTRQLDLAVLFQADGHHRWSLAPLLTERLFLI 166 Query: 121 GSHQLIGMPKGKQVRLKDIGALPLVMPSGTHGLRAIVATAFAQAKREPNIVAEIDGLAIL 180 G + G+P GK V+L + LPL++PS HGLR+++ AFA+ K +PN+VAEIDGLA+L Sbjct: 167 GRRDMPGVPAGKTVKLAQLHDLPLILPSSPHGLRSVLDVAFARGKFQPNLVAEIDGLAML 226 Query: 181 MDVVRAGLAATIQPGAAASRLPASVVRLVQVADKGVRRRNLLASLPEDELSPAALATRIV 240 MD VRAG AT+QPGAA +RL + ++ +AD G RR N+LASL ++ELSPA LA R Sbjct: 227 MDAVRAGFGATVQPGAAVARLGGEPLAMIAIADAGARRPNVLASLSDEELSPAGLAARGT 286 Query: 241 LKDVVRELLSESHWMGASLHES 262 L V R+L+ + W GA+LH+S Sbjct: 287 LASVARQLVLDGSWPGATLHDS 308 >ref|YP_001586083.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] ref|YP_001941221.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] ref|ZP_03572132.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] ref|ZP_03578360.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gb|ABX19791.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] dbj|BAG47231.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gb|EEE07566.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gb|EEE13940.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 317 Score = 325 bits (833), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 167/262 (63%), Positives = 212/262 (80%) Query: 1 LLQRTTTGVVPTDAGLAFWHQAQLALRHVDEAARAAQHARMSGHVSVGFAPSTASVLALT 60 LLQRT+ GV+PTDAGLAFW QAQLALRH+D+AA AA+ AR+SGHVSVG APSTASVL + Sbjct: 47 LLQRTSGGVIPTDAGLAFWRQAQLALRHIDDAALAARSARLSGHVSVGMAPSTASVLGVA 106 Query: 61 FMNGLRARYPDIRLHLVESLSGNLATMLNARQLDLAILFETDVAKRLSATPLLDERLFVV 120 FM +RARYPD+RLHLVESLSG+LA+ML+ARQ+DLA+LF + A+R S PLLDERLF++ Sbjct: 107 FMQAMRARYPDVRLHLVESLSGHLASMLSARQIDLAVLFREESAQRWSVQPLLDERLFLI 166 Query: 121 GSHQLIGMPKGKQVRLKDIGALPLVMPSGTHGLRAIVATAFAQAKREPNIVAEIDGLAIL 180 G+ L GMP +RL D+G LPL++PSGTHGLR+++++AF +A+ EPNIVAE+DGLA+L Sbjct: 167 GAADLDGMPTRGSIRLTDLGKLPLILPSGTHGLRSLLSSAFKRAEYEPNIVAEVDGLALL 226 Query: 181 MDVVRAGLAATIQPGAAASRLPASVVRLVQVADKGVRRRNLLASLPEDELSPAALATRIV 240 MD+VR G+ ATIQPGAA +R + + V VA+K RR NL+AS+ +DELSPA LA R+V Sbjct: 227 MDIVRTGIGATIQPGAALARRENATLTSVPVAEKYARRPNLIASISDDELSPAGLAARVV 286 Query: 241 LKDVVRELLSESHWMGASLHES 262 L DV R+L+ E W GA L E+ Sbjct: 287 LADVARQLVHEGRWPGARLRET 308 >ref|YP_001889344.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD19974.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 317 Score = 323 bits (829), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 169/261 (64%), Positives = 211/261 (80%) Query: 1 LLQRTTTGVVPTDAGLAFWHQAQLALRHVDEAARAAQHARMSGHVSVGFAPSTASVLALT 60 LLQRT+ GVVPTDAGLAFW QAQLALRH+D+AA AA+ AR+SGHVSVG APSTASVL + Sbjct: 47 LLQRTSAGVVPTDAGLAFWRQAQLALRHIDDAALAARSARLSGHVSVGMAPSTASVLGVA 106 Query: 61 FMNGLRARYPDIRLHLVESLSGNLATMLNARQLDLAILFETDVAKRLSATPLLDERLFVV 120 FM +R RYP++RLH+VESLSG LA+ML+ARQ+DLA+LF + A+ LS PLLDERLF++ Sbjct: 107 FMKAMRTRYPEVRLHMVESLSGYLASMLSARQIDLAVLFREEPAQSLSLMPLLDERLFLI 166 Query: 121 GSHQLIGMPKGKQVRLKDIGALPLVMPSGTHGLRAIVATAFAQAKREPNIVAEIDGLAIL 180 G+ +L GMP G VRLK++G LPL++PSG HGLR+++A+AF +A+ EPNIVAE+DGLA+L Sbjct: 167 GAGELDGMPVGASVRLKNLGRLPLILPSGAHGLRSLLASAFKRAEHEPNIVAEVDGLALL 226 Query: 181 MDVVRAGLAATIQPGAAASRLPASVVRLVQVADKGVRRRNLLASLPEDELSPAALATRIV 240 MD VR+GL ATIQPGAA +R V+ V VA+K R NL+AS+ +DELSPA LA R+V Sbjct: 227 MDFVRSGLGATIQPGAALARPENLVLTSVPVAEKYATRPNLIASISDDELSPAGLAARVV 286 Query: 241 LKDVVRELLSESHWMGASLHE 261 L DVVR+L+ E W GA L E Sbjct: 287 LADVVRQLVQEGRWPGARLRE 307