BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0264.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003978605.1| ABC branched chain amino acid family transpo...   228   2e-58
ref|ZP_04760856.1| Extracellular ligand-binding receptor [Acidov...   203   8e-51
ref|YP_004126446.1| extracellular ligand-binding receptor [Alicy...   202   1e-50
ref|YP_555749.1| branched chain amino acid ABC transporter perip...   101   3e-20

>ref|YP_003978605.1| ABC branched chain amino acid family transporter periplasmic ligand
           binding protein [Achromobacter xylosoxidans A8]
 gb|ADP15890.1| ABC branched chain amino acid family transporter, periplasmic
           ligand binding protein [Achromobacter xylosoxidans A8]
          Length = 393

 Score =  228 bits (581), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/133 (78%), Positives = 115/133 (86%)

Query: 1   MATGVGPTALGVNSGVRYHFTVENAPNKKFVEAFRKKYNEFPSSAAGEAYDGMSWWLDVV 60
           MA GVGPTA+GV SGVRYHFTVEN  NK FVEAFRKKYNEFPS+AAGEAYDGMSWWLDVV
Sbjct: 259 MAAGVGPTAVGVQSGVRYHFTVENDANKTFVEAFRKKYNEFPSAAAGEAYDGMSWWLDVV 318

Query: 61  EKTGSWDKEKWVDAFANSVRDNSVEGRKEMKACDHQARQDGLWGEVVAGKPPYPAYIMKI 120
           +KTG+WDKEKWV+AFA S RDNSVEG+K M+ACDHQA Q+GLWG V  GKPP PAY+M I
Sbjct: 319 DKTGTWDKEKWVEAFAASERDNSVEGKKTMRACDHQAMQNGLWGVVDTGKPPQPAYVMDI 378

Query: 121 AKVYPPKDVFEDC 133
            KV+PP  VFE C
Sbjct: 379 VKVFPPDQVFEPC 391


>ref|ZP_04760856.1| Extracellular ligand-binding receptor [Acidovorax delafieldii 2AN]
 gb|EER62403.1| Extracellular ligand-binding receptor [Acidovorax delafieldii 2AN]
          Length = 398

 Score =  203 bits (516), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 91/133 (68%), Positives = 106/133 (79%)

Query: 1   MATGVGPTALGVNSGVRYHFTVENAPNKKFVEAFRKKYNEFPSSAAGEAYDGMSWWLDVV 60
           MA  VGP +LGVNSG+RY  +++ A N+KFVEA+RKK+  FPS  AGEAYDGM+WWLD V
Sbjct: 264 MAAAVGPASLGVNSGLRYDHSIDTAANRKFVEAYRKKFGIFPSMTAGEAYDGMAWWLDTV 323

Query: 61  EKTGSWDKEKWVDAFANSVRDNSVEGRKEMKACDHQARQDGLWGEVVAGKPPYPAYIMKI 120
           EKTGSWDKEKWVDAFA SVR+NSVEGRK M+ACDHQA Q G WGEVV G PP PA  MKI
Sbjct: 324 EKTGSWDKEKWVDAFAISVRENSVEGRKTMRACDHQALQPGFWGEVVQGTPPAPALTMKI 383

Query: 121 AKVYPPKDVFEDC 133
            K++P + +F  C
Sbjct: 384 TKIFPEEKLFAAC 396


>ref|YP_004126446.1| extracellular ligand-binding receptor [Alicycliphilus denitrificans
           BC]
 ref|YP_004388944.1| extracellular ligand-binding receptor [Alicycliphilus denitrificans
           K601]
 gb|ADU99558.1| Extracellular ligand-binding receptor [Alicycliphilus denitrificans
           BC]
 gb|AEB85428.1| Extracellular ligand-binding receptor [Alicycliphilus denitrificans
           K601]
          Length = 398

 Score =  202 bits (514), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/133 (68%), Positives = 106/133 (79%)

Query: 1   MATGVGPTALGVNSGVRYHFTVENAPNKKFVEAFRKKYNEFPSSAAGEAYDGMSWWLDVV 60
           MA  VGP +LGVN+G+RY  T++ A N+KFVEA+RKK+  FPS  AGEAYDGM+WWLD V
Sbjct: 264 MAAAVGPASLGVNTGLRYDHTIDTAANRKFVEAYRKKFGIFPSMTAGEAYDGMAWWLDTV 323

Query: 61  EKTGSWDKEKWVDAFANSVRDNSVEGRKEMKACDHQARQDGLWGEVVAGKPPYPAYIMKI 120
           EKTGSWDKEKWVDAFA SVR+NSVEG+K M+ACDHQA Q G WGEVV G PP PA  MKI
Sbjct: 324 EKTGSWDKEKWVDAFAASVRENSVEGKKTMRACDHQALQPGFWGEVVQGTPPAPALTMKI 383

Query: 121 AKVYPPKDVFEDC 133
            KV+  + +FE C
Sbjct: 384 TKVFAEEKLFEAC 396


>ref|YP_555749.1| branched chain amino acid ABC transporter periplasmic
           ligand-binding protein [Burkholderia xenovorans LB400]
 gb|ABE36399.1| amino acid/amide ABC transporter substrate-binding protein, HAAT
           family [Burkholderia xenovorans LB400]
          Length = 416

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 68/115 (59%), Gaps = 1/115 (0%)

Query: 1   MATGVGPTALGVNSGVRYHFTVENAPNKKFVEAFRKKYNEF-PSSAAGEAYDGMSWWLDV 59
           MA   G  ALGV S V YH +++N  N+KFV  +RK Y+   PS  AGEAY+G++W LDV
Sbjct: 277 MAKAAGDAALGVVSAVGYHHSIDNDANRKFVSEYRKSYSGIAPSFGAGEAYEGINWMLDV 336

Query: 60  VEKTGSWDKEKWVDAFANSVRDNSVEGRKEMKACDHQARQDGLWGEVVAGKPPYP 114
           +E+T S D   W+ A   S   NS+EG K M+ CDHQA +     E V G    P
Sbjct: 337 IERTHSSDPAVWISAMEKSADPNSIEGAKRMRWCDHQADRVSYMVEGVKGSGAQP 391