BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0257.p         (200 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003978598.1| GntR family transcriptional regulator [Achro...   179   2e-43
ref|YP_002289829.1| transcriptional regulator, GntR family [Olig...   111   6e-23
ref|YP_550135.1| GntR family transcriptional regulator [Polaromo...   107   7e-22
ref|YP_004632081.1| GntR family transcriptional regulator [Oligo...   101   6e-20
ref|YP_002289941.1| transcriptional regulator, GntR family [Olig...   101   6e-20

>ref|YP_003978598.1| GntR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gb|ADP15883.1| bacterial regulatory protein, GntR family protein 26 [Achromobacter
           xylosoxidans A8]
          Length = 242

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/125 (71%), Positives = 102/125 (81%)

Query: 1   MTSTDKLFDREAVSQTEKAYVLLEELVVTGGLPPGTQWSEIVLSERIGIGRSPTRDALQK 60
           MT +  LF R AVSQTEKAY  LEE++VTG LPPG+QWSE  LSER+GIGRSP RDALQK
Sbjct: 1   MTQSAPLFVRTAVSQTEKAYCALEEMIVTGELPPGSQWSETTLSERVGIGRSPVRDALQK 60

Query: 61  LAFQRLVHIVPRQGIFISEIDYQGQLQVIQSRREIERLIVSQATLCANEEEREAMAVLVA 120
           LAFQRLV I PRQGIFISEIDYQGQL++IQ+RREIERLIV+QA   A++ ER  +A L  
Sbjct: 61  LAFQRLVEIAPRQGIFISEIDYQGQLKIIQARREIERLIVAQAAQWADDGERAELARLAR 120

Query: 121 QLEKL 125
           +LE L
Sbjct: 121 ELEDL 125


>ref|YP_002289829.1| transcriptional regulator, GntR family [Oligotropha carboxidovorans
           OM5]
 gb|ACI93964.1| transcriptional regulator, GntR family [Oligotropha carboxidovorans
           OM5]
          Length = 247

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 90/142 (63%), Gaps = 6/142 (4%)

Query: 16  TEKAYVLLEELVVTGGLPPGTQWSEIVLSERIGIGRSPTRDALQKLAFQRLVHIVPRQGI 75
           T+ AY  LEE++VT  +PPGT  SE  L +R+ IGR+PTR+ALQ+LA   LV I+PR+GI
Sbjct: 41  TDLAYSELEEIIVTLQIPPGTVLSERTLMQRLKIGRTPTREALQRLAHDGLVVIIPRRGI 100

Query: 76  FISEIDYQGQLQVIQSRREIERLIVSQATLCANEEEREAMAVLVAQLEKLXRHAAGVAAK 135
            +SEI+ Q QL++++ RREIERL+   A   AN+EER+  A L   + K  + A  +   
Sbjct: 101 MVSEINLQKQLRLLEVRREIERLMARLAAERANDEERKEFAELAKNMVKAAKSADDIEFM 160

Query: 136 ------AGLIASNSHGLISDRT 151
                  GLIA+ +H   + R+
Sbjct: 161 RLDQRFNGLIANAAHNEFARRS 182


>ref|YP_550135.1| GntR family transcriptional regulator [Polaromonas sp. JS666]
 gb|ABE45237.1| transcriptional regulator, GntR family [Polaromonas sp. JS666]
          Length = 250

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 96/157 (61%), Gaps = 7/157 (4%)

Query: 13  VSQTEKAYVLLEELVVTGGLPPGTQWSEIVLSERIGIGRSPTRDALQKLAFQRLVHIVPR 72
           +S TE+AY  LEE++VT  L PG   +E  LSE +GIGR+P R+ALQ+LA QRLV +VPR
Sbjct: 39  LSLTEQAYSQLEEMIVTLKLAPGKLVTEAELSELLGIGRTPIREALQRLAAQRLVRVVPR 98

Query: 73  QGIFISEIDYQGQLQVIQSRREIERLIVSQATLCANEEEREAMAVLVAQLEKLXRHAAGV 132
           +GI IS+ID + QL++++ RRE+ERL+   A   A+ EER  +  L A  ++  +   G 
Sbjct: 99  RGIAISDIDVKAQLRLLEVRRELERLMCRNAARRASAEERAELGRLAAAFKECAK--TGD 156

Query: 133 AAKAGLI--ASNSHGLISDR---TNTPARAYGSWSRR 164
           A K   I  A N   L++ R   T +      S SRR
Sbjct: 157 AEKFMRIDRAFNELCLVAARNEFTTSAMSLMNSLSRR 193


>ref|YP_004632081.1| GntR family transcriptional regulator [Oligotropha carboxidovorans
           OM5]
 gb|AEI02264.1| transcriptional regulator, GntR family [Oligotropha carboxidovorans
           OM4]
 gb|AEI05840.1| transcriptional regulator, GntR family [Oligotropha carboxidovorans
           OM5]
          Length = 226

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 80/124 (64%), Gaps = 2/124 (1%)

Query: 1   MTSTDKLFDREAVSQTEKAYVLLEELVVTGGLPPGTQWSEIVLSERIGIGRSPTRDALQK 60
           +   D++ D E  S+T  AY L+E ++VT  LPPG++ SE  LS ++GIGR+P R+ALQ+
Sbjct: 3   LPEVDEVHDDEPQSRT--AYRLIEAMIVTHELPPGSRISEASLSAKLGIGRTPIREALQR 60

Query: 61  LAFQRLVHIVPRQGIFISEIDYQGQLQVIQSRREIERLIVSQATLCANEEEREAMAVLVA 120
           L+F+  V IVPR G F+SEID   QL +I+ R+ IE ++  +A   A E ER+    L A
Sbjct: 61  LSFEGTVRIVPRSGAFVSEIDLVDQLAMIEVRKGIENVLAGRAARFAGEPERKRFRELAA 120

Query: 121 QLEK 124
             E+
Sbjct: 121 MFER 124


>ref|YP_002289941.1| transcriptional regulator, GntR family [Oligotropha carboxidovorans
           OM5]
 gb|ACI94076.1| transcriptional regulator, GntR family [Oligotropha carboxidovorans
           OM5]
          Length = 229

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 79/121 (65%), Gaps = 2/121 (1%)

Query: 4   TDKLFDREAVSQTEKAYVLLEELVVTGGLPPGTQWSEIVLSERIGIGRSPTRDALQKLAF 63
            D++ D E  S+T  AY L+E ++VT  LPPG++ SE  LS ++GIGR+P R+ALQ+L+F
Sbjct: 9   VDEVHDDEPQSRT--AYRLIEAMIVTHELPPGSRISEASLSAKLGIGRTPIREALQRLSF 66

Query: 64  QRLVHIVPRQGIFISEIDYQGQLQVIQSRREIERLIVSQATLCANEEEREAMAVLVAQLE 123
           +  V IVPR G F+SEID   QL +I+ R+ IE ++  +A   A E ER+    L A  E
Sbjct: 67  EGTVRIVPRSGAFVSEIDLVDQLAMIEVRKGIENVLAGRAARFAGEPERKRFRELAAMFE 126

Query: 124 K 124
           +
Sbjct: 127 R 127